Wall clock time and date at job start Tue Mar 31 2020 20:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35367 * 127.24665 * 2 1 4 4 N 1.35027 * 107.23112 * 180.25977 * 3 2 1 5 5 H 0.97005 * 124.89154 * 179.72130 * 4 3 2 6 6 N 1.28470 * 110.23046 * 359.72697 * 4 3 2 7 7 C 1.31806 * 110.07228 * 0.02562 * 6 4 3 8 8 C 1.47706 * 126.52002 * 180.02562 * 7 6 4 9 9 O 1.21573 * 120.00170 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00092 * 0.02562 * 8 7 6 11 11 C 1.47585 * 134.49353 * 180.02562 * 10 8 7 12 12 C 1.53947 * 86.11441 * 155.36057 * 11 10 8 13 13 N 1.46510 * 113.74068 * 269.15382 * 12 11 10 14 14 C 1.46498 * 120.00052 * 58.07625 * 13 12 11 15 15 C 1.34770 * 119.99490 * 238.07607 * 13 12 11 16 16 O 1.21284 * 120.00553 * 0.02562 * 15 13 12 17 17 C 1.50702 * 119.99629 * 180.02562 * 15 13 12 18 18 S 1.81003 * 109.47412 * 180.02562 * 17 15 13 19 19 C 1.76194 * 100.00065 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00011 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99684 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00125 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99784 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47002 * 90.00348 * 23 21 19 25 25 H 1.48494 * 109.46956 * 210.00163 * 23 21 19 26 26 H 1.48497 * 109.47365 * 330.00655 * 23 21 19 27 27 C 1.47580 * 134.49108 * 0.02562 * 10 8 7 28 28 H 1.09005 * 109.46709 * 270.18484 * 1 2 3 29 29 H 1.08997 * 109.47467 * 30.18469 * 1 2 3 30 30 H 1.08997 * 109.46724 * 150.18989 * 1 2 3 31 31 H 1.08010 * 126.38590 * 359.97438 * 3 2 1 32 32 H 1.08996 * 113.76681 * 41.05704 * 11 10 8 33 33 H 1.08994 * 113.76726 * 269.66003 * 11 10 8 34 34 H 1.09002 * 113.73955 * 137.95260 * 12 11 10 35 35 H 1.08999 * 109.47079 * 89.99894 * 14 13 12 36 36 H 1.08993 * 109.47138 * 209.99833 * 14 13 12 37 37 H 1.09006 * 109.46966 * 329.99946 * 14 13 12 38 38 H 1.09007 * 109.47021 * 300.00003 * 17 15 13 39 39 H 1.08991 * 109.47444 * 59.99823 * 17 15 13 40 40 H 0.97003 * 120.00158 * 179.97438 * 22 21 19 41 41 H 1.08996 * 113.77201 * 90.33634 * 27 10 8 42 42 H 1.09002 * 113.76575 * 318.93589 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6154 -0.0058 5 1 4.3887 1.1731 -0.0111 6 7 3.5999 -0.6693 -0.0036 7 6 2.3636 -1.1263 0.0031 8 6 1.9507 -2.5445 0.0080 9 8 0.7700 -2.8338 0.0137 10 7 2.8830 -3.5178 0.0063 11 6 2.8382 -4.9929 0.0094 12 6 4.2343 -4.9323 -0.6365 13 7 4.2063 -4.9143 -2.1012 14 6 3.4818 -3.8545 -2.8070 15 6 4.8472 -5.8727 -2.7992 16 8 5.4466 -6.7503 -2.2148 17 6 4.8189 -5.8538 -4.3058 18 16 5.7623 -7.2603 -4.9447 19 6 5.5668 -6.9987 -6.6761 20 1 4.9932 -6.1563 -7.0336 21 6 6.1500 -7.8753 -7.5806 22 7 6.8486 -8.9022 -7.1448 23 14 5.9421 -7.5984 -9.4162 24 1 7.0465 -6.7404 -9.9156 25 1 5.9734 -8.9053 -10.1205 26 1 4.6413 -6.9294 -9.6717 27 6 4.3587 -3.5364 0.0006 28 1 -0.3633 0.0033 1.0277 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3633 -0.8917 -0.5109 31 1 2.0220 2.1139 -0.0004 32 1 2.0705 -5.4105 -0.6420 33 1 2.8347 -5.4302 1.0078 34 1 4.9362 -5.6626 -0.2338 35 1 4.1533 -3.0159 -2.9912 36 1 3.1111 -4.2386 -3.7573 37 1 2.6420 -3.5206 -2.1976 38 1 3.7871 -5.9222 -4.6507 39 1 5.2615 -4.9253 -4.6660 40 1 7.2559 -9.5151 -7.7769 41 1 4.8018 -3.5459 0.9964 42 1 4.8049 -2.7912 -0.6579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506259048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:37 Heat of formation + Delta-G solvation = 56.652640 kcal Electronic energy + Delta-G solvation = -26513.191440 eV Core-core repulsion = 22623.376736 eV Total energy + Delta-G solvation = -3889.814704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.03344 -40.88058 -38.97807 -37.65942 -34.45897 -33.37353 -32.42763 -31.99110 -30.08581 -28.59242 -27.42153 -26.63548 -26.49214 -25.49224 -24.07923 -21.77850 -20.91477 -19.67022 -18.71367 -18.35962 -17.74670 -17.24997 -17.04993 -16.22292 -16.09421 -15.58197 -15.47254 -15.05666 -14.80032 -14.23079 -14.03672 -13.50078 -13.46167 -13.37843 -13.28401 -13.16229 -13.01544 -12.56045 -12.51026 -12.45851 -12.27048 -11.99210 -11.82394 -11.41334 -11.10316 -11.06079 -11.02271 -10.76245 -10.12353 -9.81324 -9.80942 -9.48139 -9.23466 -9.06457 -8.89160 -8.57291 -8.23434 -6.50293 -6.21615 -3.92152 1.25107 1.72384 2.36381 2.65680 2.81909 2.95808 3.16126 3.22509 3.25703 3.30483 3.57706 3.94640 4.20273 4.27690 4.36071 4.53247 4.74913 4.91319 4.92224 5.10259 5.13641 5.14792 5.16161 5.24792 5.31620 5.44206 5.47024 5.50501 5.55065 5.57361 5.74163 5.74779 5.80915 5.84111 5.90324 6.13767 6.16334 6.56745 6.59023 7.35570 7.43834 7.49036 7.59940 7.94917 8.35389 8.49032 9.23806 10.85795 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.002373 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.281207 B =11795.090696 C =12440.652624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.146 4.146 3 C -0.021 4.021 4 N -0.382 5.382 5 H 0.447 0.553 6 N -0.252 5.252 7 C -0.009 4.009 8 C 0.623 3.377 9 O -0.530 6.530 10 N -0.632 5.632 11 C 0.097 3.903 12 C 0.111 3.889 13 N -0.604 5.604 14 C 0.079 3.921 15 C 0.538 3.462 16 O -0.513 6.513 17 C -0.150 4.150 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.101 3.899 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.184 0.816 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.097 0.903 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.553 22.021 17.029 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C -0.165 4.165 4 N -0.096 5.096 5 H 0.292 0.708 6 N -0.088 5.088 7 C -0.170 4.170 8 C 0.412 3.588 9 O -0.405 6.405 10 N -0.368 5.368 11 C -0.026 4.026 12 C 0.004 3.996 13 N -0.339 5.339 14 C -0.064 4.064 15 C 0.326 3.674 16 O -0.387 6.387 17 C -0.300 4.300 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.022 4.022 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.201 0.799 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.283 20.168 17.819 27.880 hybrid contribution -1.157 2.129 -1.803 3.020 sum -8.440 22.297 16.016 28.720 Atomic orbital electron populations 1.20191 0.87990 1.03231 1.02415 1.20415 0.97662 0.90368 1.07161 1.22715 0.84144 1.00604 1.08993 1.43273 1.08656 1.04495 1.53130 0.70827 1.73599 1.23069 0.93691 1.18490 1.21777 0.89543 0.94720 1.10992 1.16479 0.84281 0.81922 0.76158 1.90796 1.16265 1.82384 1.51030 1.49957 1.07628 1.06852 1.72378 1.23759 0.98263 0.79060 1.01525 1.22427 0.97481 0.98039 0.81616 1.47526 1.53645 1.28335 1.04365 1.21809 0.96582 0.90293 0.97733 1.20386 0.77244 0.80203 0.89543 1.90694 1.41710 1.35170 1.71075 1.23558 1.05933 1.07309 0.93197 1.85372 1.65725 1.28626 1.03645 1.22854 1.39009 1.15403 0.91021 0.90950 1.24989 0.94522 0.94449 0.99612 1.70015 1.31692 1.13448 1.35116 0.86170 0.78672 0.77791 0.82884 1.20293 1.20744 1.19685 1.23669 0.79864 0.97206 1.01488 0.91448 0.91858 0.89863 0.79879 0.89256 0.88345 0.85394 0.92905 0.90623 0.91045 0.89141 0.89202 0.92182 0.88461 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 9.92 36.01 0.36 -0.31 16 2 C -0.15 -1.34 6.25 -104.40 -0.65 -1.99 16 3 C -0.02 -0.12 11.97 -17.17 -0.21 -0.33 16 4 N -0.38 -2.28 6.83 30.47 0.21 -2.07 16 5 H 0.45 1.00 8.96 -190.43 -1.71 -0.71 16 6 N -0.25 -2.36 10.65 33.42 0.36 -2.00 16 7 C -0.01 -0.11 7.09 -82.77 -0.59 -0.69 16 8 C 0.62 7.99 7.09 -12.39 -0.09 7.90 16 9 O -0.53 -8.14 15.85 5.30 0.08 -8.06 16 10 N -0.63 -7.03 2.22 -179.72 -0.40 -7.43 16 11 C 0.10 1.02 8.24 -2.97 -0.02 1.00 16 12 C 0.11 1.26 4.52 -70.14 -0.32 0.95 16 13 N -0.60 -8.50 3.09 -175.74 -0.54 -9.04 16 14 C 0.08 0.97 9.24 59.85 0.55 1.52 16 15 C 0.54 9.99 7.69 -10.99 -0.08 9.91 16 16 O -0.51 -11.21 15.34 5.55 0.09 -11.13 16 17 C -0.15 -3.03 4.71 36.01 0.17 -2.86 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 23 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.10 0.96 7.16 -2.98 -0.02 0.94 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.87 6.72 -51.93 -0.35 0.52 16 31 H 0.18 0.39 8.06 -52.48 -0.42 -0.04 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.13 1.51 7.22 -51.93 -0.37 1.14 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.93 6.44 -51.93 -0.33 0.60 16 37 H 0.07 0.88 5.33 -51.93 -0.28 0.60 16 38 H 0.09 1.73 7.40 -51.91 -0.38 1.34 16 39 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.94 7.25 -51.93 -0.38 0.56 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -37.46 367.99 -8.60 -46.06 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.73 Total: -2.19 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.70 Total: 3.13 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.35 Total: -45.90 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.17 Total: -19.19 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.46 -8.60 -46.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506259048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.708 kcal (2) G-P(sol) polarization free energy of solvation -37.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds