Wall clock time and date at job start Tue Mar 31 2020 20:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35367 * 127.24665 * 2 1 4 4 N 1.35027 * 107.23112 * 180.25977 * 3 2 1 5 5 H 0.97005 * 124.89154 * 179.72130 * 4 3 2 6 6 N 1.28470 * 110.23046 * 359.72697 * 4 3 2 7 7 C 1.31806 * 110.07228 * 0.02562 * 6 4 3 8 8 C 1.47706 * 126.52002 * 180.02562 * 7 6 4 9 9 O 1.21573 * 120.00170 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00092 * 0.02562 * 8 7 6 11 11 C 1.47585 * 134.49353 * 180.02562 * 10 8 7 12 12 C 1.53947 * 86.11441 * 155.36057 * 11 10 8 13 13 N 1.46510 * 113.74068 * 269.15382 * 12 11 10 14 14 C 1.46498 * 120.00052 * 58.07625 * 13 12 11 15 15 C 1.34770 * 119.99490 * 238.07607 * 13 12 11 16 16 O 1.21284 * 120.00553 * 0.02562 * 15 13 12 17 17 C 1.50702 * 119.99629 * 180.02562 * 15 13 12 18 18 S 1.81003 * 109.47412 * 180.02562 * 17 15 13 19 19 C 1.76194 * 100.00065 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00011 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99684 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00125 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99784 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47002 * 90.00348 * 23 21 19 25 25 H 1.48494 * 109.46956 * 210.00163 * 23 21 19 26 26 H 1.48497 * 109.47365 * 330.00655 * 23 21 19 27 27 C 1.47580 * 134.49108 * 0.02562 * 10 8 7 28 28 H 1.09005 * 109.46709 * 270.18484 * 1 2 3 29 29 H 1.08997 * 109.47467 * 30.18469 * 1 2 3 30 30 H 1.08997 * 109.46724 * 150.18989 * 1 2 3 31 31 H 1.08010 * 126.38590 * 359.97438 * 3 2 1 32 32 H 1.08996 * 113.76681 * 41.05704 * 11 10 8 33 33 H 1.08994 * 113.76726 * 269.66003 * 11 10 8 34 34 H 1.09002 * 113.73955 * 137.95260 * 12 11 10 35 35 H 1.08999 * 109.47079 * 89.99894 * 14 13 12 36 36 H 1.08993 * 109.47138 * 209.99833 * 14 13 12 37 37 H 1.09006 * 109.46966 * 329.99946 * 14 13 12 38 38 H 1.09007 * 109.47021 * 300.00003 * 17 15 13 39 39 H 1.08991 * 109.47444 * 59.99823 * 17 15 13 40 40 H 0.97003 * 120.00158 * 179.97438 * 22 21 19 41 41 H 1.08996 * 113.77201 * 90.33634 * 27 10 8 42 42 H 1.09002 * 113.76575 * 318.93589 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6154 -0.0058 5 1 4.3887 1.1731 -0.0111 6 7 3.5999 -0.6693 -0.0036 7 6 2.3636 -1.1263 0.0031 8 6 1.9507 -2.5445 0.0080 9 8 0.7700 -2.8338 0.0137 10 7 2.8830 -3.5178 0.0063 11 6 2.8382 -4.9929 0.0094 12 6 4.2343 -4.9323 -0.6365 13 7 4.2063 -4.9143 -2.1012 14 6 3.4818 -3.8545 -2.8070 15 6 4.8472 -5.8727 -2.7992 16 8 5.4466 -6.7503 -2.2148 17 6 4.8189 -5.8538 -4.3058 18 16 5.7623 -7.2603 -4.9447 19 6 5.5668 -6.9987 -6.6761 20 1 4.9932 -6.1563 -7.0336 21 6 6.1500 -7.8753 -7.5806 22 7 6.8486 -8.9022 -7.1448 23 14 5.9421 -7.5984 -9.4162 24 1 7.0465 -6.7404 -9.9156 25 1 5.9734 -8.9053 -10.1205 26 1 4.6413 -6.9294 -9.6717 27 6 4.3587 -3.5364 0.0006 28 1 -0.3633 0.0033 1.0277 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3633 -0.8917 -0.5109 31 1 2.0220 2.1139 -0.0004 32 1 2.0705 -5.4105 -0.6420 33 1 2.8347 -5.4302 1.0078 34 1 4.9362 -5.6626 -0.2338 35 1 4.1533 -3.0159 -2.9912 36 1 3.1111 -4.2386 -3.7573 37 1 2.6420 -3.5206 -2.1976 38 1 3.7871 -5.9222 -4.6507 39 1 5.2615 -4.9253 -4.6660 40 1 7.2559 -9.5151 -7.7769 41 1 4.8018 -3.5459 0.9964 42 1 4.8049 -2.7912 -0.6579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506259048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:36 Heat of formation + Delta-G solvation = 30.211958 kcal Electronic energy + Delta-G solvation = -26514.337994 eV Core-core repulsion = 22623.376736 eV Total energy + Delta-G solvation = -3890.961258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.62407 -41.90365 -40.23251 -38.75347 -35.72455 -34.58408 -33.97884 -32.70338 -31.27792 -29.83858 -28.05696 -27.74531 -27.61520 -27.33433 -24.90411 -22.82824 -21.53089 -20.70494 -19.88327 -19.44312 -18.98517 -18.38442 -18.06061 -17.21640 -16.97579 -16.88614 -16.80317 -16.64559 -16.25684 -15.64240 -14.91607 -14.64801 -14.59371 -14.56065 -14.14721 -14.10732 -13.98465 -13.78016 -13.60015 -13.42160 -13.31058 -13.16555 -13.12064 -12.89407 -12.75206 -12.60590 -12.34202 -11.79988 -11.73448 -11.14155 -11.05399 -10.98646 -10.45176 -10.28024 -9.92398 -9.79881 -9.65738 -8.66809 -8.34687 -6.12539 0.50556 1.17959 1.22987 1.42299 1.43918 1.49090 1.55470 1.61849 1.98705 2.13355 2.27051 2.31996 2.99427 3.20808 3.23931 3.38254 3.62418 3.74008 3.91195 4.06027 4.07260 4.22337 4.27887 4.37810 4.45424 4.48925 4.50022 4.55829 4.58311 4.64017 4.76466 4.79025 4.82010 4.90247 5.09057 5.20690 5.41880 5.47399 5.52581 6.15063 6.17568 6.20112 6.51802 6.79880 7.06019 7.06844 7.08472 8.74456 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.002373 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.281207 B =11795.090696 C =12440.652624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.178 4.178 3 C 0.007 3.993 4 N -0.365 5.365 5 H 0.464 0.536 6 N -0.263 5.263 7 C -0.040 4.040 8 C 0.618 3.382 9 O -0.568 6.568 10 N -0.633 5.633 11 C 0.100 3.900 12 C 0.102 3.898 13 N -0.591 5.591 14 C 0.080 3.920 15 C 0.540 3.460 16 O -0.553 6.553 17 C -0.126 4.126 18 S -0.144 6.144 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.260 1.260 27 C 0.118 3.882 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.228 0.772 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.125 0.875 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 25.354 16.918 31.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.188 4.188 3 C -0.138 4.138 4 N -0.081 5.081 5 H 0.313 0.687 6 N -0.101 5.101 7 C -0.199 4.199 8 C 0.407 3.593 9 O -0.446 6.446 10 N -0.368 5.368 11 C -0.023 4.023 12 C -0.003 4.003 13 N -0.324 5.324 14 C -0.062 4.062 15 C 0.328 3.672 16 O -0.430 6.430 17 C -0.277 4.277 18 S 0.083 5.917 19 C -0.694 4.694 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.819 3.181 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.184 1.184 27 C -0.005 4.005 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.244 0.756 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.494 23.545 17.735 30.414 hybrid contribution -1.112 1.229 -1.652 2.340 sum -8.607 24.774 16.083 30.765 Atomic orbital electron populations 1.20121 0.88000 1.02925 1.02304 1.20695 0.98208 0.90951 1.08932 1.23268 0.83157 1.01638 1.05739 1.43416 1.09753 1.03756 1.51189 0.68708 1.73515 1.22316 0.95261 1.19051 1.21667 0.90762 0.94182 1.13275 1.16819 0.83934 0.82953 0.75561 1.90766 1.17752 1.83146 1.52929 1.50020 1.08215 1.06769 1.71803 1.23806 0.96875 0.79196 1.02456 1.22628 0.98229 0.99679 0.79810 1.47431 1.52078 1.27229 1.05626 1.21905 0.96738 0.90026 0.97559 1.20051 0.77574 0.80706 0.88855 1.90682 1.43887 1.37011 1.71442 1.23383 1.05283 1.04451 0.94553 1.85504 1.67985 1.33403 1.04805 1.23182 1.39182 1.15800 0.91271 0.90104 1.26107 0.93860 0.93917 1.05171 1.70173 1.32807 1.14591 1.37060 0.84967 0.79258 0.77963 0.75883 1.19218 1.20265 1.18364 1.23698 0.78945 0.95274 1.02596 0.91529 0.89383 0.92840 0.75576 0.90792 0.85826 0.85617 0.91283 0.90567 0.90928 0.87801 0.87499 0.91956 0.85741 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.92 71.24 0.71 -0.49 16 2 C -0.18 -2.96 6.25 -19.72 -0.12 -3.08 16 3 C 0.01 0.06 11.97 83.54 1.00 1.06 16 4 N -0.36 -3.15 6.83 -57.51 -0.39 -3.54 16 5 H 0.46 0.33 8.96 -219.99 -1.97 -1.64 16 6 N -0.26 -4.34 10.65 -48.18 -0.51 -4.85 16 7 C -0.04 -0.84 7.09 42.46 0.30 -0.54 16 8 C 0.62 15.74 7.09 86.75 0.62 16.35 16 9 O -0.57 -18.01 15.85 -3.95 -0.06 -18.07 16 10 N -0.63 -13.52 2.22 -840.76 -1.87 -15.39 16 11 C 0.10 2.03 8.24 86.48 0.71 2.75 16 12 C 0.10 2.23 4.52 46.75 0.21 2.44 16 13 N -0.59 -16.17 3.09 -828.31 -2.56 -18.73 16 14 C 0.08 1.86 9.24 127.77 1.18 3.04 16 15 C 0.54 20.09 7.69 87.66 0.67 20.76 16 16 O -0.55 -24.74 15.34 -3.04 -0.05 -24.78 16 17 C -0.13 -5.08 4.71 71.24 0.34 -4.74 16 18 S -0.14 -8.00 20.57 -56.49 -1.16 -9.16 16 19 C -0.55 -31.27 9.50 67.96 0.65 -30.62 16 20 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 21 C 0.01 0.82 5.49 84.86 0.47 1.28 16 22 N -0.91 -55.79 13.22 21.65 0.29 -55.50 16 23 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 C 0.12 2.01 7.16 86.48 0.62 2.63 16 28 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 1.16 6.72 -2.39 -0.02 1.14 16 31 H 0.23 -0.27 8.06 -2.91 -0.02 -0.29 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.13 2.90 7.22 -2.39 -0.02 2.89 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.77 6.44 -2.39 -0.02 1.76 16 37 H 0.07 1.73 5.33 -2.38 -0.01 1.71 16 38 H 0.10 3.90 7.40 -2.39 -0.02 3.89 16 39 H 0.11 3.94 8.11 -2.40 -0.02 3.92 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 1.68 7.25 -2.39 -0.02 1.66 16 Total: -1.00 -84.91 367.99 2.15 -82.76 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -0.90 Total: 10.73 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.35 Total: 10.84 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -5.05 Total: -98.01 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -0.11 Total: -42.85 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -84.91 2.15 -82.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506259048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.969 kcal (2) G-P(sol) polarization free energy of solvation -84.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds