Wall clock time and date at job start Tue Mar 31 2020 20:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30913 * 121.84078 * 2 1 4 4 S 1.75771 * 109.82204 * 179.97438 * 3 2 1 5 5 C 1.76248 * 90.70131 * 0.02562 * 4 3 2 6 6 N 1.32357 * 141.95537 * 180.02562 * 5 4 3 7 7 C 1.33885 * 109.13583 * 179.37286 * 6 5 4 8 8 C 1.50699 * 125.80665 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46948 * 305.50753 * 8 7 6 10 10 O 1.21280 * 120.00249 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99853 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46845 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47228 * 295.00103 * 13 12 11 15 15 C 1.53003 * 109.46653 * 175.00155 * 13 12 11 16 16 O 1.42899 * 109.47322 * 304.99802 * 15 13 12 17 17 N 1.46493 * 109.47029 * 55.00241 * 13 12 11 18 18 C 1.36938 * 119.99819 * 204.99824 * 17 13 12 19 19 H 1.07996 * 119.99968 * 359.97438 * 18 17 13 20 20 C 1.38818 * 119.99882 * 180.02562 * 18 17 13 21 21 N 1.31619 * 119.99770 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00152 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46685 * 90.00150 * 22 20 18 24 24 H 1.48494 * 109.47161 * 210.00253 * 22 20 18 25 25 H 1.48495 * 109.46959 * 330.00890 * 22 20 18 26 26 C 1.34339 * 108.38333 * 0.50791 * 7 6 5 27 27 N 1.35154 * 109.22232 * 359.75733 * 5 4 3 28 28 H 1.09002 * 109.47152 * 90.02381 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02482 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02462 * 1 2 3 31 31 H 1.08007 * 125.08674 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.46400 * 65.50272 * 8 7 6 33 33 H 1.08992 * 109.47207 * 185.50357 * 8 7 6 34 34 H 0.96999 * 119.99991 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47016 * 300.00676 * 12 11 9 36 36 H 1.08996 * 109.46486 * 60.00293 * 12 11 9 37 37 H 1.09000 * 109.47066 * 65.00002 * 15 13 12 38 38 H 1.09003 * 109.46716 * 184.99894 * 15 13 12 39 39 H 0.96693 * 113.99815 * 180.02562 * 16 15 13 40 40 H 0.97003 * 120.00091 * 24.99547 * 17 13 12 41 41 H 0.97003 * 119.99848 * 180.02562 * 21 20 18 42 42 H 1.07999 * 126.43176 * 179.58644 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1121 0.0000 4 16 3.9169 0.7461 0.0007 5 6 3.5710 -0.9821 0.0002 6 7 4.1662 -2.1643 0.0006 7 6 3.2340 -3.1251 0.0135 8 6 3.4971 -4.6089 0.0189 9 6 4.3875 -4.9653 -1.1436 10 8 4.7702 -4.0998 -1.9020 11 7 4.7584 -6.2461 -1.3403 12 6 5.6235 -6.5927 -2.4707 13 6 5.8908 -8.0992 -2.4651 14 1 6.4603 -8.3639 -1.5743 15 6 6.6898 -8.4799 -3.7132 16 8 5.9968 -8.0285 -4.8785 17 7 4.6161 -8.8212 -2.4622 18 6 4.5503 -10.0920 -1.9563 19 1 5.4381 -10.5620 -1.5598 20 6 3.3425 -10.7764 -1.9539 21 7 3.2791 -11.9976 -1.4672 22 14 1.8070 -9.9636 -2.6403 23 1 1.6919 -10.2674 -4.0894 24 1 0.6117 -10.4835 -1.9290 25 1 1.8971 -8.4939 -2.4484 26 6 2.0240 -2.5414 0.0101 27 7 2.2323 -1.1680 0.0050 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 1.7744 2.1058 -0.0004 32 1 3.9881 -4.8873 0.9514 33 1 2.5526 -5.1457 -0.0689 34 1 4.4520 -6.9384 -0.7340 35 1 5.1320 -6.3146 -3.4030 36 1 6.5679 -6.0554 -2.3835 37 1 7.6735 -8.0124 -3.6715 38 1 6.8038 -9.5632 -3.7551 39 1 6.4466 -8.2364 -5.7088 40 1 3.8188 -8.3991 -2.8186 41 1 2.4353 -12.4760 -1.4659 42 1 1.0688 -3.0454 0.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507227500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:14 Heat of formation + Delta-G solvation = 28.923791 kcal Electronic energy + Delta-G solvation = -26231.268364 eV Core-core repulsion = 22340.251246 eV Total energy + Delta-G solvation = -3891.017117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -42.83769 -39.31816 -37.50307 -37.04998 -34.94561 -33.46127 -32.35330 -31.47713 -30.94283 -29.56844 -28.74683 -27.14599 -24.97233 -23.39592 -23.25848 -21.21605 -20.35781 -20.13830 -19.58162 -18.42505 -17.90438 -16.87576 -16.75047 -16.24033 -15.84187 -15.72551 -15.18555 -14.98718 -14.51922 -14.42957 -14.15147 -13.87122 -13.61532 -13.45233 -13.35041 -13.07264 -12.97363 -12.76779 -12.70748 -12.48843 -12.07702 -11.53969 -11.47150 -11.41570 -10.96451 -10.85763 -10.67171 -10.64065 -10.17786 -10.11583 -9.65091 -9.55395 -9.41396 -9.00138 -8.87258 -8.56849 -7.83800 -7.34254 -5.83011 -3.18948 0.65665 0.70287 1.38958 1.97784 2.28912 2.71813 3.04506 3.34956 3.41383 3.44315 3.66519 4.08362 4.24524 4.52849 4.55328 4.70698 4.84244 4.86147 4.91495 5.07208 5.21217 5.24266 5.25535 5.30634 5.43519 5.45669 5.47206 5.56894 5.87063 5.88529 5.96437 5.98072 6.26999 6.34771 6.41853 6.65578 6.67290 6.91963 7.65206 7.91334 7.96634 8.13656 8.36139 8.65528 9.14435 9.86999 10.07703 11.34777 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.002550 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.521068 B =10979.225616 C =12077.746623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.085 3.915 3 C -0.236 4.236 4 S 0.180 5.820 5 C 0.137 3.863 6 N -0.423 5.423 7 C 0.072 3.928 8 C -0.061 4.061 9 C 0.513 3.487 10 O -0.532 6.532 11 N -0.721 5.721 12 C 0.118 3.882 13 C 0.172 3.828 14 H 0.074 0.926 15 C 0.059 3.941 16 O -0.565 6.565 17 N -0.738 5.738 18 C -0.248 4.248 19 H 0.091 0.909 20 C 0.009 3.991 21 N -0.932 5.932 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.276 1.276 26 C -0.049 4.049 27 N -0.407 5.407 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.194 0.806 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.408 0.592 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.054 0.946 39 H 0.366 0.634 40 H 0.366 0.634 41 H 0.260 0.740 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 25.376 4.389 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.026 4.026 3 C -0.373 4.373 4 S 0.431 5.569 5 C -0.229 4.229 6 N -0.146 5.146 7 C -0.060 4.060 8 C -0.102 4.102 9 C 0.297 3.703 10 O -0.408 6.408 11 N -0.374 5.374 12 C -0.006 4.006 13 C 0.061 3.939 14 H 0.092 0.908 15 C -0.022 4.022 16 O -0.369 6.369 17 N -0.381 5.381 18 C -0.378 4.378 19 H 0.108 0.892 20 C -0.188 4.188 21 N -0.579 5.579 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.202 1.202 26 C -0.180 4.180 27 N -0.087 5.087 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.211 0.789 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.244 0.756 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.211 0.789 40 H 0.199 0.801 41 H 0.070 0.930 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.576 26.629 4.416 27.038 hybrid contribution -2.926 -0.969 -0.747 3.172 sum -4.502 25.660 3.669 26.309 Atomic orbital electron populations 1.20683 0.86511 1.04447 1.03991 1.19041 0.96074 0.83350 1.04155 1.24773 0.96984 1.01818 1.13731 1.84700 1.02144 0.87920 1.82182 1.26194 0.82954 1.01450 1.12351 1.70525 1.31032 0.94257 1.18757 1.19989 0.88064 0.94693 1.03243 1.20000 1.01701 0.89013 0.99451 1.20214 0.81270 0.82569 0.86214 1.90716 1.55337 1.48024 1.46699 1.45986 1.51654 1.08550 1.31165 1.21539 0.94073 0.95697 0.89311 1.20571 0.89145 0.89274 0.94895 0.90774 1.22998 0.93552 0.98566 0.87092 1.86520 1.51998 1.82473 1.15870 1.42722 1.05264 1.15723 1.74440 1.19059 0.96591 0.89268 1.32893 0.89170 1.24647 0.97415 0.96006 1.00689 1.69704 1.25776 1.11288 1.51120 0.86549 0.83958 0.78890 0.79069 1.21127 1.21891 1.20240 1.22438 1.01073 0.78819 1.15717 1.43743 1.07220 1.05765 1.51932 0.89709 0.89182 0.90568 0.78942 0.87080 0.87116 0.75627 0.90894 0.91836 0.95105 0.92818 0.78918 0.80089 0.93015 0.79969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.21 36.01 0.37 -0.12 16 2 C 0.08 0.74 6.75 -81.75 -0.55 0.19 16 3 C -0.24 -1.71 10.80 29.04 0.31 -1.40 16 4 S 0.18 1.81 23.37 -107.50 -2.51 -0.70 16 5 C 0.14 1.98 8.93 -88.70 -0.79 1.18 16 6 N -0.42 -7.23 10.66 -9.77 -0.10 -7.33 16 7 C 0.07 1.06 5.85 -83.07 -0.49 0.58 16 8 C -0.06 -0.80 6.26 -29.04 -0.18 -0.98 16 9 C 0.51 8.74 7.82 -10.98 -0.09 8.65 16 10 O -0.53 -11.15 15.54 5.56 0.09 -11.07 16 11 N -0.72 -11.96 5.39 -60.29 -0.32 -12.29 16 12 C 0.12 2.07 5.12 -4.04 -0.02 2.05 16 13 C 0.17 3.17 2.84 -67.93 -0.19 2.97 16 14 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 15 C 0.06 1.00 6.86 37.16 0.25 1.26 16 16 O -0.57 -9.69 12.64 -35.23 -0.45 -10.13 16 17 N -0.74 -16.56 4.31 -53.43 -0.23 -16.79 16 18 C -0.25 -6.59 10.41 -15.06 -0.16 -6.75 16 19 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 21 N -0.93 -28.27 13.97 55.49 0.78 -27.50 16 22 Si 0.88 21.73 27.74 -169.99 -4.71 17.02 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 26 C -0.05 -0.60 11.85 -15.71 -0.19 -0.78 16 27 N -0.41 -4.98 3.19 -59.54 -0.19 -5.17 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.24 8.10 -51.93 -0.42 -0.18 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.19 0.65 8.06 -52.48 -0.42 0.23 16 32 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.11 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.41 6.48 8.14 -40.82 -0.33 6.15 16 35 H 0.07 1.43 7.39 -51.93 -0.38 1.05 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.37 4.49 9.12 45.56 0.42 4.91 16 40 H 0.37 8.50 5.66 -40.82 -0.23 8.27 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.18 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -37.83 372.65 -8.62 -46.45 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -4.77 Total: 14.90 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -1.81 Total: 7.00 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -0.07 Total: -69.08 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.36 Total: -21.20 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.51 Total: -0.70 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.83 -8.62 -46.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507227500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.374 kcal (2) G-P(sol) polarization free energy of solvation -37.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds