Wall clock time and date at job start Tue Mar 31 2020 21:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46989 * 2 1 4 4 H 1.09000 * 109.46662 * 55.00238 * 3 2 1 5 5 C 1.52996 * 109.47336 * 174.99994 * 3 2 1 6 6 N 1.46498 * 109.47059 * 175.00083 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46661 * 60.00586 * 15 13 11 17 17 H 1.48501 * 109.47391 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47355 * 300.00441 * 15 13 11 19 19 N 1.46494 * 109.47171 * 295.00630 * 3 2 1 20 20 C 1.34779 * 120.00531 * 84.99693 * 19 3 2 21 21 O 1.21512 * 119.99668 * 0.02562 * 20 19 3 22 22 C 1.48133 * 120.00236 * 179.97438 * 20 19 3 23 23 C 1.40112 * 121.14519 * 179.71869 * 22 20 19 24 24 C 1.38502 * 117.81977 * 179.73991 * 23 22 20 25 25 N 1.31914 * 119.97314 * 0.54933 * 24 23 22 26 26 N 1.28279 * 122.51445 * 359.70792 * 25 24 23 27 27 C 1.31931 * 122.32470 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47199 * 299.99158 * 1 2 3 30 30 H 1.08995 * 109.47432 * 60.00127 * 1 2 3 31 31 H 1.08997 * 109.47199 * 240.00842 * 2 1 3 32 32 H 1.08995 * 109.47432 * 119.99873 * 2 1 3 33 33 H 1.09004 * 109.47066 * 55.00351 * 5 3 2 34 34 H 1.08994 * 109.46974 * 295.00498 * 5 3 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 36 36 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 37 37 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 38 38 H 0.96991 * 119.99795 * 179.97438 * 14 13 11 39 39 H 0.97009 * 119.99912 * 264.99313 * 19 3 2 40 40 H 1.08001 * 121.08712 * 359.97438 * 23 22 20 41 41 H 1.08003 * 120.01114 * 180.25773 * 24 23 22 42 42 H 1.08000 * 120.17064 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4445 0.1257 6 7 4.0629 2.8170 0.0060 7 6 5.3850 3.0639 0.0919 8 8 6.1629 2.1493 0.2633 9 6 5.8970 4.4764 -0.0250 10 16 7.7004 4.4794 0.1295 11 6 8.0192 6.2039 -0.0403 12 1 7.2004 6.8924 -0.1889 13 6 9.3225 6.6778 0.0180 14 7 10.3204 5.8387 0.1996 15 14 9.6606 8.5060 -0.1628 16 1 8.9606 9.2478 0.9166 17 1 11.1220 8.7512 -0.0652 18 1 9.1681 8.9723 -1.4838 19 7 1.6523 2.0976 -1.2517 20 6 0.4349 2.6644 -1.3668 21 8 -0.3409 2.6326 -0.4322 22 6 0.0432 3.3272 -2.6324 23 6 -1.2182 3.9190 -2.7802 24 6 -1.5102 4.5246 -3.9911 25 7 -0.6170 4.5212 -4.9619 26 7 0.5375 3.9766 -4.8349 27 6 0.9166 3.3784 -3.7218 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9954 0.8313 -0.6660 34 1 3.8498 1.0378 1.0959 35 1 3.4408 3.5485 -0.1308 36 1 5.6151 4.8859 -0.9950 37 1 5.4631 5.0869 0.7670 38 1 11.2311 6.1699 0.2400 39 1 2.2718 2.1233 -1.9977 40 1 -1.9378 3.9067 -1.9749 41 1 -2.4704 4.9952 -4.1421 42 1 1.8974 2.9315 -3.6527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001531083124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:43 Heat of formation + Delta-G solvation = -44.903456 kcal Electronic energy + Delta-G solvation = -25905.416933 eV Core-core repulsion = 22011.198426 eV Total energy + Delta-G solvation = -3894.218507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.33591 -41.12314 -40.37869 -37.72169 -35.07615 -34.65010 -34.58068 -33.88649 -32.89943 -31.45696 -29.12165 -27.65408 -26.65372 -25.61045 -24.35268 -22.72355 -21.86738 -21.57209 -19.93244 -19.36346 -18.78993 -17.83037 -17.50986 -17.47580 -17.12077 -16.87746 -16.70402 -16.46128 -16.13188 -15.90219 -15.67839 -15.04440 -14.80396 -14.60484 -14.48137 -14.46121 -14.22390 -14.02668 -13.49155 -13.17163 -13.04560 -12.86874 -12.66559 -12.54464 -12.22737 -12.05031 -11.85944 -11.74086 -11.53589 -11.32927 -11.25378 -11.13237 -10.99080 -10.74295 -10.28301 -10.24385 -10.15893 -8.65923 -8.34947 -6.12405 -0.78903 -0.19041 1.26540 1.43223 1.46237 1.55621 1.59923 1.61461 1.78660 2.23778 2.28620 2.54173 2.99266 3.01198 3.17910 3.31476 3.45053 3.48401 3.53532 3.80122 3.89719 4.02128 4.09404 4.28764 4.32362 4.38984 4.51149 4.51820 4.53890 4.67670 4.71733 4.79360 4.92850 5.03330 5.08188 5.13791 5.32422 5.38711 5.41535 5.46451 6.19263 6.25296 6.42557 6.93006 7.06719 7.20639 7.53758 8.73856 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.002585 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.689011 B =10830.607772 C =12805.929468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.148 3.852 4 H 0.095 0.905 5 C 0.114 3.886 6 N -0.714 5.714 7 C 0.538 3.462 8 O -0.559 6.559 9 C -0.133 4.133 10 S -0.146 6.146 11 C -0.548 4.548 12 H 0.081 0.919 13 C 0.015 3.985 14 N -0.910 5.910 15 Si 0.995 3.005 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.263 1.263 19 N -0.707 5.707 20 C 0.571 3.429 21 O -0.540 6.540 22 C -0.141 4.141 23 C -0.051 4.051 24 C 0.045 3.955 25 N -0.260 5.260 26 N -0.275 5.275 27 C 0.073 3.927 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.412 0.588 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.271 0.729 39 H 0.413 0.587 40 H 0.181 0.819 41 H 0.215 0.785 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.802 -7.777 -4.458 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.043 3.957 4 H 0.113 0.887 5 C -0.010 4.010 6 N -0.368 5.368 7 C 0.323 3.677 8 O -0.437 6.437 9 C -0.284 4.284 10 S 0.081 5.919 11 C -0.696 4.696 12 H 0.099 0.901 13 C -0.190 4.190 14 N -0.547 5.547 15 Si 0.817 3.183 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.187 1.187 19 N -0.360 5.360 20 C 0.357 3.643 21 O -0.417 6.417 22 C -0.155 4.155 23 C -0.081 4.081 24 C -0.120 4.120 25 N -0.101 5.101 26 N -0.115 5.115 27 C -0.093 4.093 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.248 0.752 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.199 0.801 41 H 0.232 0.768 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -26.481 -8.934 -5.046 28.399 hybrid contribution -0.567 1.848 0.823 2.101 sum -27.048 -7.086 -4.223 28.278 Atomic orbital electron populations 1.21731 0.95176 1.01075 1.01740 1.21892 0.96440 0.94242 1.04256 1.21288 0.92259 0.95150 0.86982 0.88688 1.21750 0.92189 0.83129 1.03953 1.45706 1.06013 1.10469 1.74634 1.19942 0.82722 0.89657 0.75344 1.90712 1.56935 1.46936 1.49103 1.23392 1.01115 0.97308 1.06611 1.85525 0.99382 1.11630 1.95375 1.23172 0.96141 0.92646 1.57647 0.90064 1.26089 0.94768 1.04302 0.93851 1.70163 1.00053 1.37145 1.47297 0.85047 0.77383 0.76435 0.79417 1.18753 1.20389 1.18730 1.45927 1.15977 1.56632 1.17486 1.17840 0.82116 0.78017 0.86365 1.90828 1.51623 1.59287 1.39974 1.21246 0.97030 1.01523 0.95690 1.22945 0.95619 0.90288 0.99233 1.24979 1.01746 0.95943 0.89317 1.72854 0.97709 1.11002 1.28580 1.73057 1.09543 1.06544 1.22356 1.24881 1.01285 0.94152 0.88962 0.92482 0.93171 0.93785 0.90259 0.89257 0.90121 0.89852 0.75159 0.87215 0.87608 0.91975 0.74950 0.80144 0.76808 0.78716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.51 71.98 0.61 -1.21 16 2 C -0.13 -1.33 5.61 30.60 0.17 -1.16 16 3 C 0.15 1.70 2.41 44.99 0.11 1.81 16 4 H 0.10 1.31 7.58 -2.39 -0.02 1.29 16 5 C 0.11 1.79 5.23 86.38 0.45 2.24 16 6 N -0.71 -14.49 5.39 -463.07 -2.49 -16.98 16 7 C 0.54 17.69 7.85 87.66 0.69 18.38 16 8 O -0.56 -23.59 15.86 -3.04 -0.05 -23.64 16 9 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 10 S -0.15 -7.88 20.57 -56.49 -1.16 -9.04 16 11 C -0.55 -30.81 9.50 67.96 0.65 -30.17 16 12 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 13 C 0.01 0.84 5.49 84.86 0.47 1.30 16 14 N -0.91 -55.31 13.22 21.65 0.29 -55.03 16 15 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 16 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 N -0.71 -7.09 4.43 -445.15 -1.97 -9.06 16 20 C 0.57 7.57 6.37 86.87 0.55 8.12 16 21 O -0.54 -9.93 13.63 -3.75 -0.05 -9.98 16 22 C -0.14 -1.73 5.92 -19.83 -0.12 -1.85 16 23 C -0.05 -0.52 9.77 22.79 0.22 -0.30 16 24 C 0.04 0.48 11.30 84.74 0.96 1.44 16 25 N -0.26 -4.82 11.48 -57.33 -0.66 -5.47 16 26 N -0.28 -5.39 11.49 -56.53 -0.65 -6.04 16 27 C 0.07 0.97 10.84 85.04 0.92 1.90 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.05 0.78 7.84 -2.39 -0.02 0.76 16 30 H 0.04 0.66 5.65 -2.39 -0.01 0.64 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.41 6.39 8.14 -92.71 -0.75 5.63 16 36 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 37 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 38 H 0.27 15.35 8.31 -92.72 -0.77 14.58 16 39 H 0.41 2.86 6.76 -92.70 -0.63 2.23 16 40 H 0.18 1.20 7.80 -2.91 -0.02 1.18 16 41 H 0.22 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.20 1.45 6.53 -2.91 -0.02 1.44 16 Total: -1.00 -81.96 373.38 1.09 -80.86 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -0.31 Total: 13.15 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 6.12 Total: -4.00 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -5.49 Total: -92.58 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.10 Total: -33.62 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -81.96 1.09 -80.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531083124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.960 kcal (2) G-P(sol) polarization free energy of solvation -81.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds