Wall clock time and date at job start Tue Mar 31 2020 20:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38805 * 120.42642 * 2 1 4 4 C 1.39490 * 118.26131 * 179.72040 * 3 2 1 5 5 C 1.48455 * 120.54754 * 180.02562 * 4 3 2 6 6 O 1.21477 * 120.00232 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99975 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00144 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47205 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.47050 * 64.99893 * 9 8 7 11 11 C 1.53000 * 109.47028 * 184.99990 * 9 8 7 12 12 N 1.46500 * 109.47065 * 304.99847 * 9 8 7 13 13 C 1.34779 * 119.99953 * 154.99885 * 12 9 8 14 14 O 1.21280 * 120.00228 * 0.02562 * 13 12 9 15 15 C 1.50696 * 119.99859 * 179.97438 * 13 12 9 16 16 S 1.81000 * 109.47144 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00219 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00162 * 0.02562 * 17 16 15 19 19 C 1.38803 * 120.00086 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99647 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99796 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47338 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47183 * 120.00044 * 21 19 17 24 24 H 1.48501 * 109.46759 * 239.99749 * 21 19 17 25 25 N 1.33110 * 118.90280 * 359.97438 * 4 3 2 26 26 C 1.31548 * 120.73603 * 359.97438 * 25 4 3 27 27 N 1.31912 * 121.91815 * 0.02562 * 26 25 4 28 28 H 1.08999 * 109.46862 * 90.00185 * 1 2 3 29 29 H 1.09001 * 109.47207 * 210.00166 * 1 2 3 30 30 H 1.08998 * 109.47502 * 330.00813 * 1 2 3 31 31 H 1.07998 * 120.86548 * 359.73933 * 3 2 1 32 32 H 0.96999 * 120.00105 * 359.97438 * 7 5 4 33 33 H 1.08994 * 109.46747 * 299.99714 * 8 7 5 34 34 H 1.08997 * 109.47126 * 59.99632 * 8 7 5 35 35 H 1.09003 * 109.46794 * 179.97438 * 11 9 8 36 36 H 1.08994 * 109.47112 * 299.99853 * 11 9 8 37 37 H 1.08999 * 109.47285 * 60.00047 * 11 9 8 38 38 H 0.96996 * 120.00323 * 334.99988 * 12 9 8 39 39 H 1.09002 * 109.47453 * 300.00087 * 15 13 12 40 40 H 1.09003 * 109.47348 * 60.00121 * 15 13 12 41 41 H 0.97008 * 119.99365 * 180.02562 * 20 19 17 42 42 H 1.07992 * 119.04212 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 0.0060 5 6 4.4062 2.3933 0.0069 6 8 3.8493 3.4729 0.0018 7 7 5.7524 2.3295 0.0122 8 6 6.5442 3.5621 0.0136 9 6 8.0335 3.2117 0.0204 10 1 8.2916 2.7042 -0.9090 11 6 8.8585 4.4939 0.1476 12 7 8.3225 2.3305 1.1545 13 6 9.3825 1.4992 1.1090 14 8 10.0973 1.4811 0.1294 15 6 9.6802 0.5932 2.2758 16 16 11.1549 -0.3919 1.9139 17 6 11.2683 -1.3305 3.4008 18 1 10.5397 -1.1895 4.1854 19 6 12.2936 -2.2520 3.5633 20 7 13.1807 -2.4250 2.6064 21 14 12.4134 -3.2476 5.1393 22 1 11.3033 -2.8686 6.0498 23 1 12.3194 -4.6946 4.8190 24 1 13.7131 -2.9707 5.8020 25 7 4.2027 -0.0446 0.0120 26 6 3.4954 -1.1537 0.0128 27 7 2.1764 -1.1397 0.0072 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6912 2.1441 -0.0042 32 1 6.1971 1.4675 0.0158 33 1 6.3117 4.1442 -0.8781 34 1 6.3048 4.1467 0.9018 35 1 9.9195 4.2441 0.1530 36 1 8.6435 5.1495 -0.6961 37 1 8.6004 5.0013 1.0771 38 1 7.7511 2.3452 1.9382 39 1 9.8555 1.1949 3.1676 40 1 8.8323 -0.0703 2.4462 41 1 13.8970 -3.0693 2.7198 42 1 4.0096 -2.1034 0.0181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533642002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:26 Heat of formation + Delta-G solvation = -31.206613 kcal Electronic energy + Delta-G solvation = -25598.687810 eV Core-core repulsion = 21705.063243 eV Total energy + Delta-G solvation = -3893.624567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66408 -40.01932 -39.21331 -36.47810 -35.06080 -33.83270 -33.04667 -32.44472 -31.48414 -29.14869 -28.63185 -27.26642 -25.50333 -24.83353 -23.99785 -21.87383 -20.98168 -20.40000 -18.74293 -18.01955 -17.68187 -16.66112 -16.37209 -16.19475 -15.93728 -15.90069 -15.51531 -15.02628 -14.92176 -14.81755 -14.29206 -14.14291 -13.65933 -13.51888 -13.33371 -13.18892 -12.97844 -12.89359 -12.81851 -12.58801 -12.09972 -11.87699 -11.38149 -11.21636 -11.08318 -11.03541 -10.99164 -10.82778 -10.76930 -10.06983 -9.82457 -9.76173 -9.55625 -9.41013 -9.10406 -9.03258 -8.25499 -6.51783 -6.23557 -3.93933 0.06311 0.45693 2.33415 2.52810 2.97305 3.02637 3.20419 3.26681 3.31024 3.38243 3.48698 3.55848 3.66258 4.01058 4.18687 4.34394 4.40784 4.49636 4.83203 4.85437 5.01211 5.05101 5.07154 5.11162 5.12136 5.20707 5.28724 5.37690 5.41681 5.51518 5.62525 5.85457 5.85548 5.89085 5.90785 6.11395 6.12983 6.38658 6.53608 7.03985 7.53193 7.58209 7.61188 7.70061 8.33828 8.53783 9.22186 10.83880 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010404 B = 0.002596 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.502823 B =10782.064227 C =12991.494089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.176 3.824 3 C -0.171 4.171 4 C 0.132 3.868 5 C 0.571 3.429 6 O -0.527 6.527 7 N -0.704 5.704 8 C 0.110 3.890 9 C 0.132 3.868 10 H 0.097 0.903 11 C -0.161 4.161 12 N -0.738 5.738 13 C 0.535 3.465 14 O -0.514 6.514 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.498 5.498 26 C 0.304 3.696 27 N -0.507 5.507 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.418 0.582 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.399 0.601 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.997 9.902 -5.030 26.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.028 3.972 3 C -0.194 4.194 4 C -0.015 4.015 5 C 0.355 3.645 6 O -0.402 6.402 7 N -0.356 5.356 8 C -0.014 4.014 9 C 0.026 3.974 10 H 0.115 0.885 11 C -0.220 4.220 12 N -0.393 5.393 13 C 0.321 3.679 14 O -0.388 6.388 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.215 5.215 26 C 0.016 3.984 27 N -0.222 5.222 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.177 0.823 32 H 0.255 0.745 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.503 9.739 -6.740 25.429 hybrid contribution -1.092 -0.338 2.545 2.790 sum -23.594 9.401 -4.196 25.742 Atomic orbital electron populations 1.20835 0.87116 1.04508 1.04071 1.21885 0.98032 0.87735 0.89522 1.22798 0.94555 1.01412 1.00609 1.21589 0.92059 0.92618 0.95264 1.17783 0.82400 0.87095 0.77260 1.90802 1.71398 1.28248 1.49763 1.45861 1.05508 1.11315 1.72893 1.21844 0.89289 0.86451 1.03772 1.21139 0.92174 0.92192 0.91874 0.88520 1.22115 1.01522 0.96140 1.02201 1.46147 1.31245 1.41789 1.20149 1.20325 0.79518 0.79442 0.88605 1.90709 1.47290 1.67234 1.33521 1.23538 1.06843 1.01316 0.98775 1.85390 1.26979 1.45414 1.25475 1.22900 1.16239 1.25940 1.03198 0.90908 1.24994 0.94707 0.96401 0.97512 1.70028 1.14106 1.33974 1.32154 0.86118 0.78171 0.79454 0.81767 1.19630 1.20553 1.20577 1.68380 1.41895 0.98530 1.12685 1.25087 0.86409 0.96853 0.90035 1.68263 1.10575 1.30438 1.12974 0.89288 0.89506 0.89734 0.82272 0.74463 0.89494 0.90302 0.90919 0.91451 0.92146 0.76744 0.89249 0.89180 0.92234 0.77691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.22 36.01 0.37 -0.12 16 2 C 0.18 1.42 6.83 -82.23 -0.56 0.86 16 3 C -0.17 -1.48 9.41 -38.91 -0.37 -1.85 16 4 C 0.13 1.38 6.79 -82.64 -0.56 0.82 16 5 C 0.57 6.34 7.83 -12.05 -0.09 6.24 16 6 O -0.53 -6.84 16.43 5.39 0.09 -6.75 16 7 N -0.70 -6.96 5.38 -61.06 -0.33 -7.29 16 8 C 0.11 0.96 5.23 -4.04 -0.02 0.94 16 9 C 0.13 1.36 2.73 -67.93 -0.19 1.17 16 10 H 0.10 1.16 7.58 -51.93 -0.39 0.77 16 11 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 12 N -0.74 -8.86 4.52 -53.81 -0.24 -9.10 16 13 C 0.53 9.27 7.81 -10.99 -0.09 9.18 16 14 O -0.51 -10.92 15.53 5.56 0.09 -10.84 16 15 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 16 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 17 C -0.53 -15.02 9.50 30.94 0.29 -14.72 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 21 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 N -0.50 -5.27 9.70 -11.14 -0.11 -5.38 16 26 C 0.30 2.86 12.27 -92.26 -1.13 1.72 16 27 N -0.51 -4.80 10.36 -10.81 -0.11 -4.92 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.24 8.10 -51.93 -0.42 -0.18 16 31 H 0.16 1.15 7.74 -52.49 -0.41 0.75 16 32 H 0.42 4.34 7.52 -40.82 -0.31 4.03 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.40 3.93 8.60 -40.82 -0.35 3.58 16 39 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.21 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -35.82 383.32 -8.86 -44.68 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.65 Total: 4.28 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.87 Total: 2.26 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.06 Total: -51.85 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.17 Total: -17.59 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.82 -8.86 -44.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533642002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.476 kcal (2) G-P(sol) polarization free energy of solvation -35.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds