Wall clock time and date at job start Tue Mar 31 2020 20:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38573 * 119.96414 * 2 1 4 4 C 1.38827 * 118.07130 * 179.74742 * 3 2 1 5 5 C 1.39724 * 117.89257 * 0.52290 * 4 3 2 6 6 C 1.48156 * 120.17973 * 179.73357 * 5 4 3 7 7 O 1.21521 * 119.99795 * 359.73698 * 6 5 4 8 8 N 1.34770 * 119.99947 * 179.72747 * 6 5 4 9 9 C 1.46500 * 120.00256 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46596 * 325.00243 * 9 8 6 11 11 C 1.53006 * 109.47249 * 84.99846 * 9 8 6 12 12 C 1.52997 * 109.47473 * 205.00145 * 9 8 6 13 13 N 1.46503 * 109.46923 * 54.99641 * 12 9 8 14 14 C 1.34771 * 119.99694 * 179.97438 * 13 12 9 15 15 O 1.21287 * 120.00439 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00118 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47317 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99899 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99782 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00218 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00420 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99755 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46964 * 89.99917 * 22 20 18 24 24 H 1.48506 * 109.46744 * 210.00086 * 22 20 18 25 25 H 1.48501 * 109.46724 * 329.99645 * 22 20 18 26 26 N 1.32777 * 119.63746 * 359.47000 * 5 4 3 27 27 N 1.28354 * 122.02955 * 0.26915 * 26 5 4 28 28 H 1.08996 * 109.47308 * 269.97797 * 1 2 3 29 29 H 1.09004 * 109.47454 * 29.98358 * 1 2 3 30 30 H 1.09002 * 109.46600 * 149.97952 * 1 2 3 31 31 H 1.08003 * 120.96722 * 0.02562 * 3 2 1 32 32 H 1.07995 * 121.05494 * 180.28815 * 4 3 2 33 33 H 0.97005 * 120.00370 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47002 * 60.00085 * 11 9 8 35 35 H 1.08993 * 109.46955 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.47050 * 300.00351 * 11 9 8 37 37 H 1.08993 * 109.47322 * 174.99832 * 12 9 8 38 38 H 1.09002 * 109.47196 * 294.99955 * 12 9 8 39 39 H 0.96994 * 120.00097 * 0.02562 * 13 12 9 40 40 H 1.09001 * 109.46755 * 300.00519 * 16 14 13 41 41 H 1.09002 * 109.46894 * 59.99894 * 16 14 13 42 42 H 0.96995 * 120.00237 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1547 0.0054 5 6 4.1991 -0.1011 -0.0008 6 6 5.6767 -0.2091 -0.0014 7 8 6.3594 0.7963 -0.0013 8 7 6.2637 -1.4222 -0.0018 9 6 7.7248 -1.5291 -0.0018 10 1 8.1485 -0.7157 -0.5910 11 6 8.2427 -1.4413 1.4353 12 6 8.1382 -2.8698 -0.6119 13 7 7.5426 -3.0048 -1.9436 14 6 7.7713 -4.1135 -2.6748 15 8 8.4699 -4.9998 -2.2303 16 6 7.1591 -4.2521 -4.0449 17 16 7.6480 -5.8384 -4.7665 18 6 6.8166 -5.7385 -6.3168 19 1 6.2278 -4.8659 -6.5585 20 6 6.9193 -6.7805 -7.2279 21 7 6.2977 -6.7062 -8.3858 22 14 7.9384 -8.2894 -6.8101 23 1 7.0799 -9.2948 -6.1338 24 1 8.4944 -8.8721 -8.0578 25 1 9.0510 -7.9005 -5.9067 26 7 3.4497 -1.1972 -0.0008 27 7 2.1672 -1.1450 -0.0003 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3632 -0.8898 -0.5142 31 1 1.6743 2.1445 0.0004 32 1 4.1739 2.0609 0.0103 33 1 5.7188 -2.2248 -0.0020 34 1 7.8190 -2.2546 2.0244 35 1 9.3298 -1.5203 1.4351 36 1 7.9482 -0.4861 1.8699 37 1 9.2243 -2.9124 -0.6937 38 1 7.7898 -3.6821 0.0260 39 1 6.9842 -2.2959 -2.2992 40 1 6.0730 -4.2097 -3.9634 41 1 7.5076 -3.4396 -4.6824 42 1 6.3698 -7.4342 -9.0226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534114197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:56 Heat of formation + Delta-G solvation = -22.047763 kcal Electronic energy + Delta-G solvation = -25571.817403 eV Core-core repulsion = 21678.589993 eV Total energy + Delta-G solvation = -3893.227410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71510 -40.14366 -39.16828 -36.67818 -34.67217 -33.74891 -33.58896 -32.42786 -31.56918 -29.55361 -28.87329 -26.11977 -25.65112 -25.50292 -24.02702 -22.26671 -21.07831 -20.46911 -18.98743 -18.06639 -17.72846 -16.71517 -16.40122 -16.29028 -16.05423 -15.96096 -15.28603 -15.09416 -14.97338 -14.85154 -14.25050 -13.94803 -13.77053 -13.60318 -13.43968 -13.17223 -13.01979 -12.93057 -12.86730 -12.78073 -12.34859 -11.99885 -11.92433 -11.38872 -11.25295 -10.99778 -10.81793 -10.60373 -10.55251 -10.27480 -10.25063 -9.85460 -9.63548 -9.51590 -9.06417 -8.98115 -8.49513 -6.90720 -6.27803 -3.99518 -0.07204 0.23936 2.16247 2.48091 2.76035 2.95368 3.14106 3.27164 3.33273 3.35440 3.51419 3.65100 3.80838 3.98934 4.11776 4.29831 4.34177 4.41449 4.42621 4.70993 4.77759 4.88061 4.89243 4.97577 5.11236 5.11551 5.24970 5.27688 5.31414 5.33138 5.42812 5.53517 5.63329 5.65608 5.77244 5.83222 6.01256 6.02671 6.44393 6.98004 7.54352 7.62480 7.95313 8.07062 8.42910 8.45160 9.18339 10.81521 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.002505 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.578794 B =11175.910328 C =13075.827563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.087 3.913 3 C -0.123 4.123 4 C -0.061 4.061 5 C 0.013 3.987 6 C 0.581 3.419 7 O -0.527 6.527 8 N -0.705 5.705 9 C 0.130 3.870 10 H 0.100 0.900 11 C -0.161 4.161 12 C 0.113 3.887 13 N -0.738 5.738 14 C 0.532 3.468 15 O -0.518 6.518 16 C -0.125 4.125 17 S -0.140 6.140 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.202 5.202 27 N -0.238 5.238 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.415 0.585 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.400 0.600 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.992 19.547 21.767 30.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.152 4.152 4 C -0.090 4.090 5 C -0.134 4.134 6 C 0.364 3.636 7 O -0.402 6.402 8 N -0.357 5.357 9 C 0.025 3.975 10 H 0.118 0.882 11 C -0.220 4.220 12 C -0.012 4.012 13 N -0.393 5.393 14 C 0.318 3.682 15 O -0.392 6.392 16 C -0.275 4.275 17 S 0.086 5.914 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 N -0.048 5.048 27 N -0.083 5.083 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.176 0.824 32 H 0.181 0.819 33 H 0.252 0.748 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.234 0.766 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.371 17.037 22.331 28.802 hybrid contribution -1.050 1.916 -0.814 2.331 sum -7.421 18.953 21.517 29.619 Atomic orbital electron populations 1.20780 0.86836 1.04723 1.04044 1.23172 0.99579 0.90410 0.92418 1.22354 0.94239 1.00275 0.98337 1.22450 0.95120 0.99135 0.92283 1.22781 0.96275 0.92249 1.02051 1.17542 0.85278 0.84014 0.76771 1.90818 1.63548 1.35990 1.49810 1.45996 1.07857 1.08574 1.73287 1.21374 0.79380 0.98564 0.98158 0.88220 1.22114 1.01984 1.02994 0.94895 1.21635 0.99642 0.95844 0.84037 1.45947 1.54115 1.21560 1.17685 1.20274 0.80328 0.81124 0.86432 1.90707 1.37308 1.39554 1.71646 1.23282 1.04073 1.04982 0.95203 1.84765 1.67875 1.19410 1.19360 1.22317 1.35513 1.09069 0.99957 0.89418 1.24716 0.94694 0.98021 0.93897 1.69937 1.41519 1.33165 1.07133 0.86730 0.82441 0.83334 0.79320 1.19184 1.19955 1.15906 1.73231 0.99967 1.26000 1.05625 1.73148 1.00696 1.24524 1.09889 0.89320 0.89798 0.89338 0.82370 0.81908 0.74757 0.91767 0.90732 0.91528 0.89612 0.90612 0.76592 0.88463 0.88488 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.41 10.19 36.00 0.37 -0.04 16 2 C 0.09 0.63 6.87 -82.32 -0.57 0.06 16 3 C -0.12 -0.68 9.86 -39.24 -0.39 -1.07 16 4 C -0.06 -0.44 9.73 -38.81 -0.38 -0.82 16 5 C 0.01 0.12 6.83 -82.83 -0.57 -0.44 16 6 C 0.58 5.93 7.78 -12.19 -0.09 5.84 16 7 O -0.53 -6.40 16.06 5.35 0.09 -6.32 16 8 N -0.70 -6.31 4.51 -54.65 -0.25 -6.55 16 9 C 0.13 1.09 2.73 -67.93 -0.19 0.90 16 10 H 0.10 0.91 7.58 -51.93 -0.39 0.51 16 11 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 12 C 0.11 1.15 5.23 -4.04 -0.02 1.12 16 13 N -0.74 -9.20 5.39 -60.29 -0.32 -9.53 16 14 C 0.53 9.35 7.85 -10.99 -0.09 9.26 16 15 O -0.52 -10.96 15.86 5.55 0.09 -10.88 16 16 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 17 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 18 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 19 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.80 13.97 55.49 0.78 -26.03 16 22 Si 0.86 21.93 27.74 -169.99 -4.72 17.21 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 26 N -0.20 -2.21 10.75 33.32 0.36 -1.85 16 27 N -0.24 -2.51 11.43 33.62 0.38 -2.13 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.15 8.09 -51.93 -0.42 -0.27 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.16 0.29 8.06 -52.48 -0.42 -0.13 16 32 H 0.16 0.95 7.72 -52.49 -0.41 0.54 16 33 H 0.42 3.71 7.96 -40.82 -0.32 3.38 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.40 4.31 8.14 -40.82 -0.33 3.98 16 40 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 41 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 42 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -36.82 380.61 -6.66 -43.48 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.68 Total: 2.75 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.13 Total: -0.33 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.95 Total: -46.09 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.17 Total: -17.19 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.82 -6.66 -43.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534114197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.434 kcal (2) G-P(sol) polarization free energy of solvation -36.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds