Wall clock time and date at job start Tue Mar 31 2020 20:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38573 * 119.96414 * 2 1 4 4 C 1.38827 * 118.07130 * 179.74742 * 3 2 1 5 5 C 1.39724 * 117.89257 * 0.52290 * 4 3 2 6 6 C 1.48156 * 120.17973 * 179.73357 * 5 4 3 7 7 O 1.21521 * 119.99795 * 359.73698 * 6 5 4 8 8 N 1.34770 * 119.99947 * 179.72747 * 6 5 4 9 9 C 1.46500 * 120.00256 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46596 * 325.00243 * 9 8 6 11 11 C 1.53006 * 109.47249 * 84.99846 * 9 8 6 12 12 C 1.52997 * 109.47473 * 205.00145 * 9 8 6 13 13 N 1.46503 * 109.46923 * 54.99641 * 12 9 8 14 14 C 1.34771 * 119.99694 * 179.97438 * 13 12 9 15 15 O 1.21287 * 120.00439 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00118 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47317 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99899 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99782 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00218 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00420 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99755 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46964 * 89.99917 * 22 20 18 24 24 H 1.48506 * 109.46744 * 210.00086 * 22 20 18 25 25 H 1.48501 * 109.46724 * 329.99645 * 22 20 18 26 26 N 1.32777 * 119.63746 * 359.47000 * 5 4 3 27 27 N 1.28354 * 122.02955 * 0.26915 * 26 5 4 28 28 H 1.08996 * 109.47308 * 269.97797 * 1 2 3 29 29 H 1.09004 * 109.47454 * 29.98358 * 1 2 3 30 30 H 1.09002 * 109.46600 * 149.97952 * 1 2 3 31 31 H 1.08003 * 120.96722 * 0.02562 * 3 2 1 32 32 H 1.07995 * 121.05494 * 180.28815 * 4 3 2 33 33 H 0.97005 * 120.00370 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47002 * 60.00085 * 11 9 8 35 35 H 1.08993 * 109.46955 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.47050 * 300.00351 * 11 9 8 37 37 H 1.08993 * 109.47322 * 174.99832 * 12 9 8 38 38 H 1.09002 * 109.47196 * 294.99955 * 12 9 8 39 39 H 0.96994 * 120.00097 * 0.02562 * 13 12 9 40 40 H 1.09001 * 109.46755 * 300.00519 * 16 14 13 41 41 H 1.09002 * 109.46894 * 59.99894 * 16 14 13 42 42 H 0.96995 * 120.00237 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1547 0.0054 5 6 4.1991 -0.1011 -0.0008 6 6 5.6767 -0.2091 -0.0014 7 8 6.3594 0.7963 -0.0013 8 7 6.2637 -1.4222 -0.0018 9 6 7.7248 -1.5291 -0.0018 10 1 8.1485 -0.7157 -0.5910 11 6 8.2427 -1.4413 1.4353 12 6 8.1382 -2.8698 -0.6119 13 7 7.5426 -3.0048 -1.9436 14 6 7.7713 -4.1135 -2.6748 15 8 8.4699 -4.9998 -2.2303 16 6 7.1591 -4.2521 -4.0449 17 16 7.6480 -5.8384 -4.7665 18 6 6.8166 -5.7385 -6.3168 19 1 6.2278 -4.8659 -6.5585 20 6 6.9193 -6.7805 -7.2279 21 7 6.2977 -6.7062 -8.3858 22 14 7.9384 -8.2894 -6.8101 23 1 7.0799 -9.2948 -6.1338 24 1 8.4944 -8.8721 -8.0578 25 1 9.0510 -7.9005 -5.9067 26 7 3.4497 -1.1972 -0.0008 27 7 2.1672 -1.1450 -0.0003 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3632 -0.8898 -0.5142 31 1 1.6743 2.1445 0.0004 32 1 4.1739 2.0609 0.0103 33 1 5.7188 -2.2248 -0.0020 34 1 7.8190 -2.2546 2.0244 35 1 9.3298 -1.5203 1.4351 36 1 7.9482 -0.4861 1.8699 37 1 9.2243 -2.9124 -0.6937 38 1 7.7898 -3.6821 0.0260 39 1 6.9842 -2.2959 -2.2992 40 1 6.0730 -4.2097 -3.9634 41 1 7.5076 -3.4396 -4.6824 42 1 6.3698 -7.4342 -9.0226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001534114197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:55 Heat of formation + Delta-G solvation = -50.542393 kcal Electronic energy + Delta-G solvation = -25573.053023 eV Core-core repulsion = 21678.589993 eV Total energy + Delta-G solvation = -3894.463030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.34135 -41.04924 -40.37474 -37.60838 -35.28407 -34.80670 -34.67434 -34.18399 -32.40406 -30.91697 -29.35719 -27.91122 -26.93882 -26.26162 -24.57546 -22.96875 -21.87080 -21.77597 -20.01857 -19.57458 -18.59041 -17.86260 -17.55740 -17.27488 -17.05866 -16.75411 -16.60303 -16.50576 -15.87196 -15.81899 -15.51797 -15.02304 -14.88626 -14.77807 -14.32069 -14.20133 -13.90996 -13.89131 -13.61459 -13.35228 -13.32813 -13.23843 -13.01916 -13.00574 -12.66275 -12.59648 -12.10735 -11.86799 -11.37088 -11.32427 -11.17925 -11.07585 -10.86907 -10.84509 -10.56033 -10.34150 -10.21266 -9.00666 -8.52531 -6.23567 -0.66974 -0.30602 0.97075 1.31468 1.45363 1.46548 1.52249 1.54631 1.78179 2.18533 2.25177 2.50374 2.68554 2.71818 2.85702 3.28652 3.47041 3.51277 3.67564 3.81468 3.84381 3.96894 4.01726 4.18103 4.20628 4.43904 4.53178 4.55737 4.63509 4.67260 4.73437 4.74840 4.91921 4.94452 5.00237 5.19688 5.28162 5.29831 5.34886 5.69527 6.10115 6.21750 6.34615 6.86292 6.92362 7.11226 7.44831 8.60137 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.002505 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.578794 B =11175.910328 C =13075.827563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.081 3.919 3 C -0.106 4.106 4 C -0.068 4.068 5 C -0.004 4.004 6 C 0.583 3.417 7 O -0.550 6.550 8 N -0.701 5.701 9 C 0.138 3.862 10 H 0.097 0.903 11 C -0.156 4.156 12 C 0.114 3.886 13 N -0.715 5.715 14 C 0.539 3.461 15 O -0.556 6.556 16 C -0.115 4.115 17 S -0.169 6.169 18 C -0.531 4.531 19 H 0.060 0.940 20 C 0.045 3.955 21 N -0.918 5.918 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.235 1.235 26 N -0.228 5.228 27 N -0.277 5.277 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.202 0.798 32 H 0.177 0.823 33 H 0.416 0.584 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.411 0.589 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 20.968 23.262 32.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.096 4.096 5 C -0.151 4.151 6 C 0.366 3.634 7 O -0.427 6.427 8 N -0.352 5.352 9 C 0.034 3.966 10 H 0.115 0.885 11 C -0.215 4.215 12 C -0.009 4.009 13 N -0.369 5.369 14 C 0.324 3.676 15 O -0.434 6.434 16 C -0.265 4.265 17 S 0.058 5.942 18 C -0.678 4.678 19 H 0.078 0.922 20 C -0.161 4.161 21 N -0.556 5.556 22 Si 0.738 3.262 23 H -0.186 1.186 24 H -0.183 1.183 25 H -0.159 1.159 26 N -0.074 5.074 27 N -0.122 5.122 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.219 0.781 32 H 0.194 0.806 33 H 0.253 0.747 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.247 0.753 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.758 18.485 23.840 30.915 hybrid contribution -1.065 1.665 -1.206 2.315 sum -7.823 20.150 22.634 31.297 Atomic orbital electron populations 1.20921 0.84532 1.05588 1.05170 1.23755 1.01109 0.90188 0.91109 1.22822 0.93476 1.01382 0.95792 1.22718 0.96210 0.98660 0.92055 1.22818 0.95863 0.93218 1.03230 1.17655 0.85613 0.83849 0.76234 1.90798 1.64105 1.36618 1.51146 1.46010 1.08067 1.08392 1.72778 1.21324 0.79104 0.97248 0.98913 0.88467 1.22076 1.02919 1.02780 0.93677 1.21797 0.99836 0.96878 0.82415 1.45732 1.53064 1.20037 1.18028 1.19844 0.79955 0.81925 0.85834 1.90698 1.39246 1.41196 1.72252 1.23281 1.05035 1.01665 0.96563 1.84634 1.67823 1.24040 1.17708 1.22466 1.35336 1.08189 1.01829 0.92218 1.25595 0.95780 1.00906 0.93797 1.70017 1.42918 1.34496 1.08181 0.85847 0.80963 0.79793 0.79645 1.18624 1.18281 1.15895 1.73132 1.00501 1.26908 1.06843 1.73054 1.00722 1.26711 1.11705 0.87888 0.86988 0.90398 0.78067 0.80566 0.74690 0.91239 0.89280 0.92225 0.89063 0.90380 0.75331 0.87249 0.87081 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.19 71.23 0.73 0.15 16 2 C 0.08 1.04 6.87 42.59 0.29 1.33 16 3 C -0.11 -0.89 9.86 22.49 0.22 -0.67 16 4 C -0.07 -0.89 9.73 22.77 0.22 -0.67 16 5 C 0.00 -0.08 6.83 42.00 0.29 0.21 16 6 C 0.58 11.61 7.78 86.88 0.68 12.29 16 7 O -0.55 -13.01 16.06 -3.78 -0.06 -13.07 16 8 N -0.70 -12.02 4.51 -445.11 -2.01 -14.03 16 9 C 0.14 2.14 2.73 44.99 0.12 2.26 16 10 H 0.10 1.62 7.58 -2.39 -0.02 1.61 16 11 C -0.16 -1.99 9.48 71.98 0.68 -1.31 16 12 C 0.11 2.14 5.23 86.38 0.45 2.59 16 13 N -0.71 -16.78 5.39 -463.06 -2.49 -19.27 16 14 C 0.54 18.34 7.85 87.66 0.69 19.02 16 15 O -0.56 -23.11 15.86 -3.05 -0.05 -23.16 16 16 C -0.11 -4.40 6.16 71.24 0.44 -3.96 16 17 S -0.17 -8.58 18.55 -56.49 -1.05 -9.63 16 18 C -0.53 -31.31 10.04 67.95 0.68 -30.63 16 19 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 20 C 0.04 2.64 5.50 84.86 0.47 3.11 16 21 N -0.92 -56.54 13.97 21.65 0.30 -56.24 16 22 Si 0.92 45.31 27.74 68.60 1.90 47.21 16 23 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 26 N -0.23 -5.02 10.75 -48.48 -0.52 -5.54 16 27 N -0.28 -5.82 11.43 -47.53 -0.54 -6.37 16 28 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.11 -0.01 8.09 -2.38 -0.02 -0.03 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.20 -0.17 8.06 -2.91 -0.02 -0.20 16 32 H 0.18 1.73 7.72 -2.91 -0.02 1.71 16 33 H 0.42 7.22 7.96 -92.70 -0.74 6.49 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.41 8.19 8.14 -92.71 -0.75 7.44 16 40 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 41 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 42 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -81.24 380.61 0.98 -80.26 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.46 Total: 16.11 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.96 Total: 3.73 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -5.26 Total: -101.45 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.11 Total: -36.23 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.05 Total: -9.63 kcal Total: -81.24 0.98 -80.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534114197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.719 kcal (2) G-P(sol) polarization free energy of solvation -81.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds