Wall clock time and date at job start Tue Mar 31 2020 20:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38575 * 119.96418 * 2 1 4 4 C 1.38820 * 118.06858 * 179.97438 * 3 2 1 5 5 C 1.39716 * 117.89839 * 359.97438 * 4 3 2 6 6 C 1.48156 * 120.18080 * 179.97438 * 5 4 3 7 7 O 1.21510 * 120.00322 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99753 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99751 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.46863 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47117 * 65.00522 * 10 9 8 12 12 C 1.53002 * 109.47070 * 184.99959 * 10 9 8 13 13 N 1.46497 * 109.47296 * 305.00229 * 10 9 8 14 14 C 1.34772 * 119.99582 * 155.00097 * 13 10 9 15 15 O 1.21283 * 120.00452 * 359.97438 * 14 13 10 16 16 C 1.50705 * 119.99592 * 180.02562 * 14 13 10 17 17 S 1.81004 * 109.47020 * 179.97438 * 16 14 13 18 18 C 1.76203 * 100.00063 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99399 * 0.02562 * 18 17 16 20 20 C 1.38794 * 119.99849 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00409 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99621 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47311 * 60.00160 * 22 20 18 24 24 H 1.48505 * 109.47217 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47415 * 299.99861 * 22 20 18 26 26 N 1.32776 * 119.63698 * 0.02562 * 5 4 3 27 27 N 1.28352 * 122.02768 * 359.97438 * 26 5 4 28 28 H 1.08989 * 109.47046 * 89.99909 * 1 2 3 29 29 H 1.09003 * 109.46799 * 209.99844 * 1 2 3 30 30 H 1.09006 * 109.47092 * 329.99505 * 1 2 3 31 31 H 1.07997 * 120.96432 * 359.70633 * 3 2 1 32 32 H 1.08001 * 121.04836 * 179.97438 * 4 3 2 33 33 H 0.97005 * 120.00504 * 359.97438 * 8 6 5 34 34 H 1.08995 * 109.47331 * 299.99602 * 9 8 6 35 35 H 1.09002 * 109.47177 * 60.00546 * 9 8 6 36 36 H 1.09002 * 109.46690 * 60.00302 * 12 10 9 37 37 H 1.08997 * 109.47475 * 180.02562 * 12 10 9 38 38 H 1.09006 * 109.47062 * 300.00670 * 12 10 9 39 39 H 0.96998 * 119.99909 * 335.00087 * 13 10 9 40 40 H 1.09002 * 109.46812 * 299.99401 * 16 14 13 41 41 H 1.08995 * 109.47455 * 60.00046 * 16 14 13 42 42 H 0.96996 * 120.00014 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5866 1.1546 0.0005 5 6 4.1991 -0.1011 0.0016 6 6 5.6768 -0.2091 0.0017 7 8 6.3594 0.7961 0.0012 8 7 6.2637 -1.4223 0.0022 9 6 7.7249 -1.5290 0.0017 10 6 8.1284 -3.0049 0.0031 11 1 7.8049 -3.4709 -0.9278 12 6 9.6491 -3.1178 0.1282 13 7 7.4934 -3.6837 1.1354 14 6 7.2696 -5.0118 1.0854 15 8 7.5933 -5.6449 0.1029 16 6 6.6159 -5.7100 2.2501 17 16 6.4535 -7.4747 1.8817 18 6 5.6834 -8.0277 3.3669 19 1 5.4602 -7.3229 4.1542 20 6 5.3628 -9.3689 3.5245 21 7 5.6344 -10.2278 2.5648 22 14 4.5458 -9.9550 5.0988 23 1 3.2490 -9.2531 5.2746 24 1 4.3099 -11.4190 5.0187 25 1 5.4295 -9.6592 6.2550 26 7 3.4498 -1.1972 0.0016 27 7 2.1673 -1.1450 0.0010 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6744 2.1444 -0.0047 32 1 4.1739 2.0610 0.0002 33 1 5.7188 -2.2248 0.0029 34 1 8.1243 -1.0436 -0.8888 35 1 8.1250 -1.0425 0.8912 36 1 9.9725 -2.6518 1.0590 37 1 9.9366 -4.1691 0.1288 38 1 10.1215 -2.6126 -0.7143 39 1 7.2342 -3.1773 1.9210 40 1 7.2285 -5.5796 3.1422 41 1 5.6280 -5.2827 2.4220 42 1 5.4100 -11.1650 2.6748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579449798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:07 Heat of formation + Delta-G solvation = -22.081677 kcal Electronic energy + Delta-G solvation = -25610.753472 eV Core-core repulsion = 21717.524591 eV Total energy + Delta-G solvation = -3893.228880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64278 -39.99827 -39.18217 -36.44745 -34.64543 -33.77336 -33.52774 -32.40702 -31.48369 -29.20755 -28.55325 -26.71460 -25.46657 -25.35168 -23.65006 -21.87038 -21.37090 -20.36066 -18.79962 -18.01749 -17.72454 -16.62724 -16.45106 -16.10671 -16.04521 -15.84639 -15.17779 -14.94883 -14.84578 -14.77918 -14.18010 -14.05022 -13.70598 -13.44734 -13.28035 -13.14449 -12.94380 -12.86101 -12.76991 -12.55168 -12.06626 -11.93083 -11.83283 -11.18380 -11.02453 -11.01852 -10.76596 -10.74816 -10.51435 -10.21793 -10.17655 -9.80638 -9.52032 -9.36952 -9.05455 -8.98895 -8.22198 -6.47495 -6.19426 -3.89757 -0.00922 0.29797 2.22965 2.57650 3.01423 3.07096 3.20852 3.25361 3.28848 3.31921 3.39064 3.70039 3.87199 4.04861 4.17641 4.22594 4.37826 4.46758 4.48434 4.88250 4.93508 5.03339 5.08824 5.14880 5.15729 5.15943 5.31596 5.36337 5.41701 5.48371 5.54728 5.66257 5.69383 5.90193 5.92955 5.94622 6.15598 6.16995 6.57711 7.05495 7.61397 7.65403 7.68807 8.14666 8.37279 8.58216 9.25901 10.87969 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009350 B = 0.002752 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.872134 B =10171.230854 C =12664.367968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.086 3.914 3 C -0.124 4.124 4 C -0.062 4.062 5 C 0.013 3.987 6 C 0.579 3.421 7 O -0.531 6.531 8 N -0.706 5.706 9 C 0.111 3.889 10 C 0.131 3.869 11 H 0.097 0.903 12 C -0.161 4.161 13 N -0.738 5.738 14 C 0.535 3.465 15 O -0.514 6.514 16 C -0.155 4.155 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.200 5.200 27 N -0.236 5.236 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.418 0.582 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.399 0.601 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 26.971 -4.962 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.057 4.057 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.134 4.134 6 C 0.362 3.638 7 O -0.407 6.407 8 N -0.358 5.358 9 C -0.013 4.013 10 C 0.026 3.974 11 H 0.115 0.885 12 C -0.220 4.220 13 N -0.393 5.393 14 C 0.321 3.679 15 O -0.387 6.387 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 N -0.046 5.046 27 N -0.080 5.080 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.255 0.745 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.233 0.767 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.522 24.765 -6.682 25.891 hybrid contribution -1.211 1.817 2.561 3.366 sum -4.733 26.581 -4.121 27.312 Atomic orbital electron populations 1.20778 0.86852 1.04634 1.04100 1.23190 0.99592 0.90423 0.92488 1.22339 0.94222 1.00232 0.98504 1.22431 0.95103 0.99084 0.92464 1.22789 0.96303 0.92250 1.02024 1.17527 0.85311 0.83929 0.77052 1.90803 1.63612 1.36050 1.50225 1.45875 1.08180 1.08674 1.73034 1.21840 0.79385 0.96309 1.03757 1.21145 0.93947 0.90370 0.91961 0.88494 1.22115 0.93932 1.03734 1.02170 1.46141 1.64325 1.08795 1.20076 1.20321 0.77735 0.81184 0.88621 1.90708 1.50037 1.64733 1.33269 1.23543 1.02846 1.05325 0.98800 1.85373 1.79450 0.92952 1.25395 1.22826 1.46059 0.96338 1.03159 0.91004 1.24980 0.95481 0.95597 0.97477 1.70004 1.44779 1.03403 1.32140 0.86236 0.79657 0.77650 0.82025 1.19914 1.20824 1.19975 1.73282 0.99957 1.25935 1.05446 1.73186 1.00691 1.24455 1.09702 0.89287 0.89322 0.89876 0.82417 0.81952 0.74489 0.89497 0.90299 0.92158 0.90924 0.91477 0.76738 0.89261 0.89116 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.19 36.01 0.37 -0.12 16 2 C 0.09 0.69 6.87 -82.32 -0.57 0.12 16 3 C -0.12 -0.76 9.86 -39.24 -0.39 -1.14 16 4 C -0.06 -0.49 9.73 -38.81 -0.38 -0.87 16 5 C 0.01 0.14 6.83 -82.83 -0.57 -0.43 16 6 C 0.58 6.56 7.82 -12.19 -0.10 6.47 16 7 O -0.53 -6.92 16.39 5.36 0.09 -6.83 16 8 N -0.71 -7.32 5.38 -61.15 -0.33 -7.65 16 9 C 0.11 1.00 5.23 -4.04 -0.02 0.98 16 10 C 0.13 1.40 2.73 -67.93 -0.19 1.22 16 11 H 0.10 1.21 7.58 -51.93 -0.39 0.81 16 12 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 13 N -0.74 -9.22 4.52 -53.80 -0.24 -9.47 16 14 C 0.54 9.57 7.81 -10.99 -0.09 9.49 16 15 O -0.51 -11.17 15.52 5.55 0.09 -11.09 16 16 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 17 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 18 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 26 N -0.20 -2.48 10.75 33.32 0.36 -2.12 16 27 N -0.24 -2.79 11.43 33.63 0.38 -2.40 16 28 H 0.09 0.32 8.14 -51.94 -0.42 -0.10 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.19 8.09 -51.93 -0.42 -0.23 16 31 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 32 H 0.16 1.02 7.72 -52.49 -0.41 0.61 16 33 H 0.42 4.64 7.50 -40.82 -0.31 4.33 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.40 4.11 8.60 -40.82 -0.35 3.76 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 383.30 15.07 5.78 5.78 Total: -1.00 -36.97 383.30 -7.17 -44.14 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.65 Total: 3.83 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.14 Total: -1.38 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.90 Total: -47.18 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.17 Total: -17.92 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.97 -7.17 -44.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579449798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.060 kcal (2) G-P(sol) polarization free energy of solvation -36.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds