Wall clock time and date at job start Tue Mar 31 2020 20:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38575 * 119.96418 * 2 1 4 4 C 1.38820 * 118.06858 * 179.97438 * 3 2 1 5 5 C 1.39716 * 117.89839 * 359.97438 * 4 3 2 6 6 C 1.48156 * 120.18080 * 179.97438 * 5 4 3 7 7 O 1.21510 * 120.00322 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99753 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99751 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.46863 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47117 * 65.00522 * 10 9 8 12 12 C 1.53002 * 109.47070 * 184.99959 * 10 9 8 13 13 N 1.46497 * 109.47296 * 305.00229 * 10 9 8 14 14 C 1.34772 * 119.99582 * 155.00097 * 13 10 9 15 15 O 1.21283 * 120.00452 * 359.97438 * 14 13 10 16 16 C 1.50705 * 119.99592 * 180.02562 * 14 13 10 17 17 S 1.81004 * 109.47020 * 179.97438 * 16 14 13 18 18 C 1.76203 * 100.00063 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99399 * 0.02562 * 18 17 16 20 20 C 1.38794 * 119.99849 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00409 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99621 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47311 * 60.00160 * 22 20 18 24 24 H 1.48505 * 109.47217 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47415 * 299.99861 * 22 20 18 26 26 N 1.32776 * 119.63698 * 0.02562 * 5 4 3 27 27 N 1.28352 * 122.02768 * 359.97438 * 26 5 4 28 28 H 1.08989 * 109.47046 * 89.99909 * 1 2 3 29 29 H 1.09003 * 109.46799 * 209.99844 * 1 2 3 30 30 H 1.09006 * 109.47092 * 329.99505 * 1 2 3 31 31 H 1.07997 * 120.96432 * 359.70633 * 3 2 1 32 32 H 1.08001 * 121.04836 * 179.97438 * 4 3 2 33 33 H 0.97005 * 120.00504 * 359.97438 * 8 6 5 34 34 H 1.08995 * 109.47331 * 299.99602 * 9 8 6 35 35 H 1.09002 * 109.47177 * 60.00546 * 9 8 6 36 36 H 1.09002 * 109.46690 * 60.00302 * 12 10 9 37 37 H 1.08997 * 109.47475 * 180.02562 * 12 10 9 38 38 H 1.09006 * 109.47062 * 300.00670 * 12 10 9 39 39 H 0.96998 * 119.99909 * 335.00087 * 13 10 9 40 40 H 1.09002 * 109.46812 * 299.99401 * 16 14 13 41 41 H 1.08995 * 109.47455 * 60.00046 * 16 14 13 42 42 H 0.96996 * 120.00014 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5866 1.1546 0.0005 5 6 4.1991 -0.1011 0.0016 6 6 5.6768 -0.2091 0.0017 7 8 6.3594 0.7961 0.0012 8 7 6.2637 -1.4223 0.0022 9 6 7.7249 -1.5290 0.0017 10 6 8.1284 -3.0049 0.0031 11 1 7.8049 -3.4709 -0.9278 12 6 9.6491 -3.1178 0.1282 13 7 7.4934 -3.6837 1.1354 14 6 7.2696 -5.0118 1.0854 15 8 7.5933 -5.6449 0.1029 16 6 6.6159 -5.7100 2.2501 17 16 6.4535 -7.4747 1.8817 18 6 5.6834 -8.0277 3.3669 19 1 5.4602 -7.3229 4.1542 20 6 5.3628 -9.3689 3.5245 21 7 5.6344 -10.2278 2.5648 22 14 4.5458 -9.9550 5.0988 23 1 3.2490 -9.2531 5.2746 24 1 4.3099 -11.4190 5.0187 25 1 5.4295 -9.6592 6.2550 26 7 3.4498 -1.1972 0.0016 27 7 2.1673 -1.1450 0.0010 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6744 2.1444 -0.0047 32 1 4.1739 2.0610 0.0002 33 1 5.7188 -2.2248 0.0029 34 1 8.1243 -1.0436 -0.8888 35 1 8.1250 -1.0425 0.8912 36 1 9.9725 -2.6518 1.0590 37 1 9.9366 -4.1691 0.1288 38 1 10.1215 -2.6126 -0.7143 39 1 7.2342 -3.1773 1.9210 40 1 7.2285 -5.5796 3.1422 41 1 5.6280 -5.2827 2.4220 42 1 5.4100 -11.1650 2.6748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579449798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:06 Heat of formation + Delta-G solvation = -50.870940 kcal Electronic energy + Delta-G solvation = -25612.001868 eV Core-core repulsion = 21717.524591 eV Total energy + Delta-G solvation = -3894.477277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.33494 -41.03957 -40.33450 -37.53789 -35.34923 -34.69864 -34.57589 -34.18166 -32.67596 -30.11884 -29.65818 -27.65484 -27.46673 -26.04550 -24.25566 -22.92253 -22.15488 -21.63409 -19.95264 -19.47242 -18.63200 -17.96962 -17.45466 -16.99601 -16.87487 -16.79860 -16.60600 -16.37014 -16.06829 -15.85650 -15.58497 -14.82469 -14.77852 -14.56560 -14.23861 -14.07348 -14.00545 -13.84223 -13.56995 -13.28958 -13.22535 -13.16470 -12.97567 -12.86692 -12.61810 -12.60453 -12.08396 -11.73623 -11.37547 -11.35887 -11.12720 -10.95672 -10.87584 -10.83922 -10.29923 -10.27547 -10.19978 -8.65363 -8.34190 -6.11800 -0.66977 -0.30317 1.26516 1.43611 1.45211 1.46488 1.56019 1.60500 1.81036 2.23970 2.29000 2.50183 2.70594 2.99754 3.29173 3.32223 3.48252 3.51381 3.67399 3.83995 3.96654 3.97382 4.03582 4.22888 4.32134 4.51005 4.53843 4.55267 4.59953 4.68810 4.74437 4.75318 4.94709 4.99094 4.99644 5.12936 5.28764 5.32065 5.41722 5.45858 6.18382 6.19873 6.45211 6.82964 7.07026 7.22305 7.45684 8.74782 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009350 B = 0.002752 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.872134 B =10171.230854 C =12664.367968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.080 3.920 3 C -0.104 4.104 4 C -0.066 4.066 5 C -0.005 4.005 6 C 0.581 3.419 7 O -0.551 6.551 8 N -0.706 5.706 9 C 0.119 3.881 10 C 0.134 3.866 11 H 0.078 0.922 12 C -0.156 4.156 13 N -0.712 5.712 14 C 0.540 3.460 15 O -0.558 6.558 16 C -0.132 4.132 17 S -0.146 6.146 18 C -0.548 4.548 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.262 1.262 26 N -0.234 5.234 27 N -0.280 5.280 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.205 0.795 32 H 0.180 0.820 33 H 0.413 0.587 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.413 0.587 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 30.166 -3.527 30.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.063 4.063 3 C -0.133 4.133 4 C -0.095 4.095 5 C -0.152 4.152 6 C 0.364 3.636 7 O -0.428 6.428 8 N -0.357 5.357 9 C -0.004 4.004 10 C 0.029 3.971 11 H 0.097 0.903 12 C -0.214 4.214 13 N -0.367 5.367 14 C 0.326 3.674 15 O -0.436 6.436 16 C -0.283 4.283 17 S 0.081 5.919 18 C -0.696 4.696 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.186 1.186 26 N -0.079 5.079 27 N -0.124 5.124 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.222 0.778 32 H 0.197 0.803 33 H 0.250 0.750 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.250 0.750 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.577 28.003 -5.233 28.853 hybrid contribution -0.907 0.996 2.056 2.458 sum -5.484 28.999 -3.177 29.683 Atomic orbital electron populations 1.20926 0.84488 1.05636 1.05136 1.23795 1.01152 0.90214 0.91111 1.22834 0.93431 1.01320 0.95685 1.22723 0.96215 0.98510 0.92040 1.22848 0.95889 0.93297 1.03204 1.17639 0.85688 0.83709 0.76541 1.90782 1.64103 1.36473 1.51435 1.45933 1.08653 1.08394 1.72674 1.21854 0.78779 0.94700 1.05112 1.21246 0.94586 0.91053 0.90176 0.90339 1.22069 0.92917 1.02242 1.04211 1.45873 1.62787 1.06905 1.21141 1.19959 0.77522 0.82631 0.87328 1.90699 1.52164 1.66110 1.34590 1.23386 1.04450 1.00068 1.00410 1.85521 1.79858 0.99739 1.26802 1.23171 1.46076 0.97052 1.03279 0.90095 1.26110 0.95942 0.95668 1.01366 1.70171 1.46110 1.03808 1.34633 0.85027 0.78791 0.77157 0.77167 1.18747 1.20304 1.18649 1.73170 1.00609 1.27158 1.06977 1.73078 1.00702 1.26922 1.11738 0.88053 0.90501 0.86673 0.77780 0.80270 0.74996 0.88195 0.88800 0.90440 0.93892 0.89098 0.74997 0.87337 0.87607 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.19 71.24 0.73 0.01 16 2 C 0.08 1.16 6.87 42.59 0.29 1.45 16 3 C -0.10 -0.96 9.86 22.49 0.22 -0.74 16 4 C -0.07 -0.93 9.73 22.77 0.22 -0.71 16 5 C -0.01 -0.11 6.83 41.99 0.29 0.18 16 6 C 0.58 12.75 7.82 86.88 0.68 13.43 16 7 O -0.55 -13.63 16.39 -3.75 -0.06 -13.69 16 8 N -0.71 -14.17 5.38 -465.66 -2.50 -16.67 16 9 C 0.12 1.94 5.23 86.38 0.45 2.39 16 10 C 0.13 2.75 2.73 45.00 0.12 2.87 16 11 H 0.08 1.97 7.58 -2.39 -0.02 1.96 16 12 C -0.16 -2.86 9.48 71.98 0.68 -2.18 16 13 N -0.71 -17.23 4.52 -442.52 -2.00 -19.23 16 14 C 0.54 19.49 7.81 87.66 0.68 20.17 16 15 O -0.56 -25.19 15.52 -3.04 -0.05 -25.24 16 16 C -0.13 -5.27 6.16 71.24 0.44 -4.84 16 17 S -0.15 -8.19 20.57 -56.49 -1.16 -9.36 16 18 C -0.55 -31.71 9.50 67.95 0.65 -31.06 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -56.51 13.22 21.65 0.29 -56.22 16 22 Si 1.00 44.13 29.55 68.60 2.03 46.15 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 N -0.23 -5.89 10.75 -48.49 -0.52 -6.42 16 27 N -0.28 -6.66 11.43 -47.53 -0.54 -7.20 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 0.05 8.09 -2.38 -0.02 0.04 16 31 H 0.21 -0.13 8.06 -2.91 -0.02 -0.15 16 32 H 0.18 1.81 7.72 -2.91 -0.02 1.79 16 33 H 0.41 9.23 7.50 -92.70 -0.69 8.54 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.41 7.79 8.60 -92.71 -0.80 6.99 16 40 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 42 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -84.97 383.30 0.97 -84.00 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.42 Total: 21.61 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 5.92 Total: 2.26 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -5.28 Total: -105.74 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.11 Total: -38.92 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.36 kcal Total: -84.97 0.97 -84.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579449798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.129 kcal (2) G-P(sol) polarization free energy of solvation -84.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds