Wall clock time and date at job start Tue Mar 31 2020 20:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35316 * 126.12483 * 2 1 4 4 C 1.39870 * 107.92161 * 180.15089 * 3 2 1 5 5 N 1.30836 * 108.20019 * 359.59732 * 4 3 2 6 6 N 1.34942 * 126.12855 * 179.71291 * 2 1 3 7 7 C 1.46502 * 126.03991 * 359.97438 * 6 2 1 8 8 C 1.50700 * 109.47034 * 269.97594 * 7 6 2 9 9 O 1.21276 * 119.99942 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99548 * 179.97438 * 8 7 6 11 11 C 1.47061 * 136.06347 * 359.62535 * 10 8 7 12 12 C 1.53754 * 87.89199 * 152.96370 * 11 10 8 13 13 N 1.46500 * 114.26801 * 139.78994 * 12 11 10 14 14 C 1.34779 * 119.99195 * 111.47948 * 13 12 11 15 15 O 1.21276 * 120.00564 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99426 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.46846 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99780 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00098 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99825 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00083 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00101 * 359.97438 * 20 18 17 23 23 H 1.48511 * 109.46962 * 90.00118 * 22 20 18 24 24 H 1.48498 * 109.47008 * 209.99524 * 22 20 18 25 25 H 1.48494 * 109.47232 * 329.99855 * 22 20 18 26 26 C 1.47073 * 136.05152 * 180.02562 * 10 8 7 27 27 H 1.09003 * 109.47261 * 270.28820 * 1 2 3 28 28 H 1.08997 * 109.47751 * 30.28709 * 1 2 3 29 29 H 1.09002 * 109.47317 * 150.29422 * 1 2 3 30 30 H 1.07998 * 126.04386 * 0.03102 * 3 2 1 31 31 H 1.08002 * 125.90382 * 179.86983 * 4 3 2 32 32 H 1.08999 * 109.46542 * 29.97403 * 7 6 2 33 33 H 1.08999 * 109.47324 * 149.97201 * 7 6 2 34 34 H 1.08996 * 113.47691 * 267.70305 * 11 10 8 35 35 H 1.09010 * 113.46115 * 38.14305 * 11 10 8 36 36 H 1.09004 * 114.39787 * 272.68515 * 12 11 10 37 37 H 0.96995 * 119.99978 * 291.48259 * 13 12 11 38 38 H 1.09001 * 109.46971 * 299.99752 * 16 14 13 39 39 H 1.08997 * 109.47248 * 60.00323 * 16 14 13 40 40 H 0.96999 * 120.00514 * 180.02562 * 21 20 18 41 41 H 1.08998 * 113.46672 * 321.86114 * 26 10 8 42 42 H 1.09002 * 113.46744 * 92.25059 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6561 -0.0035 5 7 3.6334 -0.6523 0.0032 6 7 2.3026 -1.0899 0.0055 7 6 1.8540 -2.4845 0.0130 8 6 1.7012 -2.9554 1.4364 9 8 1.9428 -2.2003 2.3541 10 7 1.2951 -4.2154 1.6894 11 6 0.9117 -5.3859 0.8859 12 6 1.3670 -6.2693 2.0590 13 7 0.4955 -7.4171 2.3221 14 6 0.9375 -8.6676 2.0825 15 8 2.0568 -8.8427 1.6496 16 6 0.0408 -9.8484 2.3526 17 16 0.9145 -11.3774 1.9346 18 6 -0.3293 -12.5596 2.3348 19 1 -1.2852 -12.2302 2.7146 20 6 -0.0806 -13.9141 2.1619 21 7 -1.0099 -14.7973 2.4603 22 14 1.5725 -14.4838 1.5043 23 1 2.5045 -14.7110 2.6380 24 1 1.3949 -15.7495 0.7483 25 1 2.1321 -13.4438 0.6041 26 6 1.0337 -5.0226 2.8907 27 1 -0.3634 0.0052 1.0277 28 1 -0.3634 0.8873 -0.5182 29 1 -0.3634 -0.8926 -0.5093 30 1 1.9740 2.1211 0.0005 31 1 4.5083 1.2892 -0.0064 32 1 0.8951 -2.5604 -0.4997 33 1 2.5895 -3.1056 -0.4983 34 1 -0.1585 -5.4449 0.6879 35 1 1.5148 -5.5115 -0.0134 36 1 2.4261 -6.5269 2.0441 37 1 -0.3996 -7.2771 2.6687 38 1 -0.2324 -9.8632 3.4077 39 1 -0.8604 -9.7667 1.7450 40 1 -0.8360 -15.7440 2.3398 41 1 1.7407 -4.8385 3.6996 42 1 -0.0042 -4.9851 3.2214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581942563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:22 Heat of formation + Delta-G solvation = 55.820775 kcal Electronic energy + Delta-G solvation = -25280.805099 eV Core-core repulsion = 21390.954323 eV Total energy + Delta-G solvation = -3889.850777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69513 -40.96446 -39.29724 -38.07271 -34.06576 -33.83485 -32.49890 -32.45901 -30.52335 -29.02352 -27.37864 -27.19412 -26.38062 -25.67501 -22.66325 -21.47996 -20.83532 -20.49328 -19.38372 -18.01401 -17.82582 -17.25208 -17.13563 -16.50221 -16.20439 -15.61049 -15.24030 -15.05188 -14.94453 -14.63702 -14.26212 -14.14466 -13.70150 -13.63963 -13.45905 -13.30603 -13.20820 -13.13719 -12.85722 -12.82643 -12.46842 -12.45035 -12.24856 -11.51869 -11.33075 -11.06147 -10.92678 -10.73851 -10.62940 -9.92876 -9.74249 -9.57039 -9.35262 -9.22553 -9.05813 -8.82727 -8.58714 -6.99840 -6.34759 -4.07632 1.38360 1.88099 2.01175 2.33238 2.56546 2.69778 2.71253 3.21998 3.29052 3.45143 3.55404 3.69769 3.97329 4.04321 4.22382 4.27323 4.35996 4.45137 4.59377 4.62352 4.66841 4.76935 4.83465 4.97655 5.02632 5.04382 5.10790 5.12975 5.20036 5.31170 5.35273 5.41086 5.62688 5.64917 5.80405 5.89954 6.24892 6.32998 6.59199 7.07758 7.35431 7.38981 7.54833 7.87998 8.25940 8.35407 9.11171 10.74330 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.035628 B = 0.001696 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.706615 B =16509.502671 C =16785.171648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.092 3.908 3 C -0.274 4.274 4 C 0.052 3.948 5 N -0.288 5.288 6 N -0.360 5.360 7 C 0.122 3.878 8 C 0.531 3.469 9 O -0.517 6.517 10 N -0.644 5.644 11 C 0.078 3.922 12 C 0.119 3.881 13 N -0.724 5.724 14 C 0.535 3.465 15 O -0.513 6.513 16 C -0.125 4.125 17 S -0.140 6.140 18 C -0.523 4.523 19 H 0.089 0.911 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.097 3.903 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.184 0.816 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.404 0.596 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.271 0.729 41 H 0.088 0.912 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 29.570 -5.512 30.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.034 4.034 3 C -0.303 4.303 4 C -0.135 4.135 5 N -0.108 5.108 6 N -0.142 5.142 7 C -0.004 4.004 8 C 0.318 3.682 9 O -0.392 6.392 10 N -0.382 5.382 11 C -0.047 4.047 12 C 0.012 3.988 13 N -0.379 5.379 14 C 0.322 3.678 15 O -0.386 6.386 16 C -0.276 4.276 17 S 0.086 5.914 18 C -0.671 4.671 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.515 5.515 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.026 4.026 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.165 0.835 31 H 0.201 0.799 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.152 0.848 37 H 0.239 0.761 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.570 28.530 -5.774 29.221 hybrid contribution -1.775 0.454 0.517 1.904 sum 0.795 28.984 -5.257 29.467 Atomic orbital electron populations 1.20481 0.87423 1.03731 1.03593 1.21084 0.94643 0.87241 1.00446 1.21217 0.92334 0.98864 1.17853 1.23861 0.98218 0.92107 0.99327 1.77415 0.95915 1.13305 1.24145 1.47934 1.04294 1.04252 1.57748 1.21304 1.03557 0.80523 0.95039 1.20305 0.77102 0.79313 0.91464 1.90796 1.49433 1.52603 1.46320 1.49221 1.66590 1.10475 1.11895 1.23812 1.01750 0.81572 0.97539 1.22681 0.97850 0.83925 0.94374 1.45787 1.18158 1.04993 1.68921 1.20386 0.87749 0.83353 0.76350 1.90720 1.20013 1.85037 1.42840 1.23289 1.02037 0.96567 1.05703 1.84830 1.24002 0.96276 1.86317 1.22299 1.01525 0.92412 1.50851 0.89330 1.24712 0.97230 0.95505 0.93809 1.69932 1.33423 1.01994 1.46172 0.86742 0.84011 0.80197 0.80929 1.19182 1.19898 1.15935 1.23397 1.02416 0.86290 0.90546 0.89996 0.89349 0.91359 0.83454 0.79872 0.85983 0.85502 0.88672 0.89276 0.84798 0.76082 0.88252 0.88215 0.91880 0.89368 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.12 36.00 0.36 -0.14 16 2 C 0.09 0.83 6.93 -82.27 -0.57 0.26 16 3 C -0.27 -2.42 10.72 -40.01 -0.43 -2.85 16 4 C 0.05 0.50 12.03 -17.37 -0.21 0.30 16 5 N -0.29 -3.54 12.58 30.62 0.39 -3.15 16 6 N -0.36 -3.76 3.10 -58.31 -0.18 -3.94 16 7 C 0.12 0.93 6.55 -5.19 -0.03 0.90 16 8 C 0.53 5.48 8.15 -10.98 -0.09 5.39 16 9 O -0.52 -7.72 17.21 5.56 0.10 -7.63 16 10 N -0.64 -5.24 3.69 -185.05 -0.68 -5.93 16 11 C 0.08 0.48 8.25 -8.38 -0.07 0.41 16 12 C 0.12 1.00 4.62 -67.66 -0.31 0.68 16 13 N -0.72 -6.81 5.39 -53.47 -0.29 -7.10 16 14 C 0.54 8.02 7.85 -10.98 -0.09 7.93 16 15 O -0.51 -9.76 15.45 5.56 0.09 -9.67 16 16 C -0.13 -2.14 6.16 36.01 0.22 -1.92 16 17 S -0.14 -3.35 18.55 -107.50 -1.99 -5.35 16 18 C -0.52 -14.47 10.04 30.94 0.31 -14.16 16 19 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 20 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 21 N -0.88 -25.82 13.97 55.49 0.78 -25.05 16 22 Si 0.86 21.13 27.74 -169.99 -4.71 16.41 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 26 C 0.10 0.72 8.38 -8.49 -0.07 0.65 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.26 7.08 -51.93 -0.37 -0.11 16 30 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.12 0.50 7.05 -51.93 -0.37 0.14 16 33 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.13 1.41 7.45 -51.93 -0.39 1.02 16 37 H 0.40 2.56 8.76 -40.82 -0.36 2.21 16 38 H 0.10 1.57 8.14 -51.91 -0.42 1.15 16 39 H 0.10 1.55 8.14 -51.92 -0.42 1.13 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -38.86 379.96 -7.57 -46.42 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.71 Total: -0.84 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.07 Total: 0.09 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.01 Total: -45.16 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.18 Total: -17.30 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.41 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.86 -7.57 -46.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581942563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.244 kcal (2) G-P(sol) polarization free energy of solvation -38.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds