Wall clock time and date at job start Tue Mar 31 2020 20:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39669 * 126.06988 * 2 1 4 4 C 1.38410 * 105.35930 * 180.10904 * 3 2 1 5 5 C 1.47168 * 126.88413 * 179.97438 * 4 3 2 6 6 O 1.21627 * 119.99909 * 184.55441 * 5 4 3 7 7 N 1.34774 * 119.99837 * 4.55001 * 5 4 3 8 8 C 1.46505 * 119.99907 * 174.27170 * 7 5 4 9 9 C 1.53495 * 114.20847 * 154.99808 * 8 7 5 10 10 N 1.47067 * 87.98454 * 87.51784 * 9 8 7 11 11 C 1.34771 * 136.06316 * 207.08139 * 10 9 8 12 12 O 1.21281 * 119.99609 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00580 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47437 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00035 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00581 * 0.02562 * 15 14 13 17 17 C 1.38804 * 120.00177 * 179.72695 * 15 14 13 18 18 N 1.31633 * 119.99790 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00263 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47477 * 89.99974 * 19 17 15 21 21 H 1.48508 * 109.47216 * 209.99874 * 19 17 15 22 22 H 1.48498 * 109.47107 * 329.99769 * 19 17 15 23 23 C 1.47073 * 87.88522 * 27.34356 * 10 9 8 24 24 N 1.36601 * 106.23236 * 359.65247 * 4 3 2 25 25 C 1.46496 * 125.19177 * 180.20539 * 24 4 3 26 26 N 1.28446 * 109.61576 * 0.22931 * 24 4 3 27 27 H 1.09005 * 109.47544 * 270.26253 * 1 2 3 28 28 H 1.09008 * 109.47281 * 30.26466 * 1 2 3 29 29 H 1.09005 * 109.47411 * 150.26426 * 1 2 3 30 30 H 1.07994 * 127.32441 * 0.02785 * 3 2 1 31 31 H 0.96996 * 120.00260 * 354.27278 * 7 5 4 32 32 H 1.09006 * 113.27896 * 21.93068 * 8 7 5 33 33 H 1.09003 * 113.46636 * 332.74210 * 9 8 7 34 34 H 1.09000 * 113.46939 * 202.30252 * 9 8 7 35 35 H 1.09003 * 109.47079 * 60.00196 * 13 11 10 36 36 H 1.09001 * 109.47055 * 300.00384 * 13 11 10 37 37 H 0.97000 * 120.00142 * 180.02562 * 18 17 15 38 38 H 1.09001 * 113.46590 * 87.43178 * 23 10 9 39 39 H 1.08994 * 113.46775 * 217.87764 * 23 10 9 40 40 H 1.08994 * 109.47138 * 84.29286 * 25 24 4 41 41 H 1.08998 * 109.47155 * 204.29419 * 25 24 4 42 42 H 1.09000 * 109.46908 * 324.29072 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3293 1.1289 0.0000 4 6 3.6239 0.6395 -0.0025 5 6 4.8664 1.4281 -0.0041 6 8 5.9424 0.8676 -0.0900 7 7 4.8119 2.7715 0.0895 8 6 6.0481 3.5478 0.2145 9 6 5.9349 4.9959 -0.2818 10 7 5.4723 5.3662 1.0642 11 6 4.6939 6.3318 1.5915 12 8 4.1898 7.1659 0.8696 13 6 4.4499 6.3753 3.0779 14 16 3.3730 7.7757 3.4719 15 6 3.2586 7.5912 5.2204 16 1 3.7781 6.7829 5.7134 17 6 2.5056 8.4885 5.9652 18 7 1.8767 9.4769 5.3651 19 14 2.3849 8.2934 7.8190 20 1 3.4806 9.0559 8.4694 21 1 1.0747 8.8128 8.2871 22 1 2.5032 6.8564 8.1742 23 6 6.2385 4.2229 1.5827 24 7 3.5173 -0.7224 0.0041 25 6 4.6449 -1.6575 0.0084 26 7 2.2774 -1.0578 0.0053 27 1 -0.3634 0.0047 1.0277 28 1 -0.3634 0.8877 -0.5180 29 1 -0.3634 -0.8924 -0.5097 30 1 2.0206 2.1638 0.0004 31 1 3.9543 3.2244 0.0742 32 1 6.9283 3.0180 -0.1500 33 1 5.1774 5.1322 -1.0538 34 1 6.8940 5.4396 -0.5486 35 1 5.4004 6.4896 3.5990 36 1 3.9710 5.4488 3.3947 37 1 1.3508 10.1042 5.8856 38 1 7.2778 4.4628 1.8074 39 1 5.7399 3.7006 2.3992 40 1 4.9899 -1.8058 1.0317 41 1 4.3266 -2.6125 -0.4097 42 1 5.4572 -1.2500 -0.5934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581947300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:44 Heat of formation + Delta-G solvation = 51.753160 kcal Electronic energy + Delta-G solvation = -25968.538144 eV Core-core repulsion = 22078.510983 eV Total energy + Delta-G solvation = -3890.027162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.85903 -40.85056 -39.21261 -37.57774 -34.62652 -33.88922 -32.46523 -31.41543 -30.27732 -29.95901 -27.88095 -26.18725 -25.84827 -25.48822 -24.11979 -22.04069 -21.10899 -19.99901 -19.10019 -18.15209 -17.74625 -16.88954 -16.72585 -16.65659 -16.05341 -15.52522 -15.41717 -14.93376 -14.83370 -14.64232 -14.13110 -13.96411 -13.77631 -13.69994 -13.49673 -13.07431 -12.99335 -12.73946 -12.66015 -12.61499 -12.54623 -12.18888 -11.96551 -11.31903 -11.08775 -11.05218 -10.99219 -10.79295 -10.52421 -9.86291 -9.68569 -9.48760 -9.33514 -9.14423 -9.10151 -8.75595 -8.29322 -6.55225 -6.25318 -3.96581 0.88665 1.98417 2.23659 2.65074 2.71546 2.80564 2.97907 3.20087 3.22014 3.27716 3.50705 3.96734 4.11615 4.15964 4.16905 4.46191 4.68036 4.81527 4.82832 4.89155 4.92917 5.06197 5.10115 5.16740 5.17724 5.27850 5.31444 5.35429 5.40647 5.41559 5.49755 5.57720 5.71072 5.81973 5.87943 6.03162 6.08742 6.19894 6.41843 6.96593 7.56167 7.62722 7.72518 7.77800 8.31637 8.43889 9.20103 10.82111 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.002619 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.534775 B =10689.684250 C =12007.644182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.025 3.975 3 C -0.180 4.180 4 C -0.042 4.042 5 C 0.602 3.398 6 O -0.540 6.540 7 N -0.692 5.692 8 C 0.107 3.893 9 C 0.098 3.902 10 N -0.655 5.655 11 C 0.562 3.438 12 O -0.512 6.512 13 C -0.145 4.145 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.272 1.272 23 C 0.087 3.913 24 N -0.257 5.257 25 C 0.087 3.913 26 N -0.275 5.275 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.163 0.837 31 H 0.411 0.589 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.269 0.731 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 -20.879 -12.592 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.131 4.131 3 C -0.209 4.209 4 C -0.170 4.170 5 C 0.388 3.612 6 O -0.417 6.417 7 N -0.343 5.343 8 C 0.001 3.999 9 C -0.026 4.026 10 N -0.395 5.395 11 C 0.352 3.648 12 O -0.385 6.385 13 C -0.296 4.296 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.038 4.038 24 N -0.044 5.044 25 C -0.053 4.053 26 N -0.110 5.110 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.180 0.820 31 H 0.247 0.753 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.221 -20.959 -13.580 25.737 hybrid contribution 0.251 0.076 2.198 2.214 sum 6.472 -20.883 -11.382 24.648 Atomic orbital electron populations 1.20126 0.86152 1.03328 1.03113 1.22049 0.97298 0.88634 1.05125 1.22215 0.90259 1.00603 1.07828 1.21242 0.95450 0.85459 1.14865 1.16838 0.86658 0.81898 0.75827 1.90785 1.29849 1.70754 1.50332 1.45194 1.10060 1.05302 1.73731 1.22321 0.88632 0.91732 0.97257 1.23270 1.01056 0.90527 0.87745 1.49800 1.49276 1.30568 1.09809 1.19968 0.76761 0.78102 0.89944 1.90729 1.49075 1.36802 1.61901 1.23475 1.05771 1.07208 0.93105 1.85392 1.59442 1.30686 1.07726 1.22847 1.36539 1.17152 0.91845 0.90943 1.24992 0.94605 0.94426 0.99513 1.70014 1.29748 1.14298 1.36183 0.86162 0.77756 0.78552 0.83010 1.20251 1.20698 1.19673 1.23556 0.97512 0.84958 0.97734 1.45533 1.05175 1.04186 1.49537 1.22331 0.85535 0.92496 1.04951 1.73162 0.89391 1.27876 1.20541 0.90556 0.90261 0.90988 0.81978 0.75328 0.85276 0.89801 0.88287 0.89307 0.89349 0.92132 0.88377 0.89859 0.89689 0.88722 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 36.00 0.38 -0.14 16 2 C 0.02 0.26 7.22 -82.47 -0.60 -0.34 16 3 C -0.18 -1.79 10.44 -38.98 -0.41 -2.20 16 4 C -0.04 -0.45 6.96 -82.05 -0.57 -1.02 16 5 C 0.60 6.24 7.79 -12.64 -0.10 6.14 16 6 O -0.54 -6.41 14.38 5.25 0.08 -6.33 16 7 N -0.69 -6.14 5.38 -54.64 -0.29 -6.44 16 8 C 0.11 0.86 4.65 -67.68 -0.31 0.54 16 9 C 0.10 0.90 8.38 -8.50 -0.07 0.82 16 10 N -0.65 -8.37 3.69 -185.05 -0.68 -9.06 16 11 C 0.56 10.29 8.10 -10.99 -0.09 10.21 16 12 O -0.51 -11.41 16.64 5.56 0.09 -11.32 16 13 C -0.15 -2.90 5.98 36.00 0.22 -2.69 16 14 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 15 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 19 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 23 C 0.09 0.80 8.25 -8.36 -0.07 0.73 16 24 N -0.26 -2.76 3.75 -63.88 -0.24 -2.99 16 25 C 0.09 0.65 10.71 59.84 0.64 1.29 16 26 N -0.28 -3.18 11.90 33.63 0.40 -2.78 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.16 1.28 7.58 -52.49 -0.40 0.88 16 31 H 0.41 3.52 7.79 -40.82 -0.32 3.20 16 32 H 0.13 0.91 7.40 -51.93 -0.38 0.53 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.11 0.82 6.55 -51.93 -0.34 0.48 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -37.10 379.32 -7.85 -44.95 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.63 Total: 0.46 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -0.78 Total: 0.55 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.08 Total: -46.43 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.17 Total: -17.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.10 -7.85 -44.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581947300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.708 kcal (2) G-P(sol) polarization free energy of solvation -37.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds