Wall clock time and date at job start Tue Mar 31 2020 20:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39669 * 126.06988 * 2 1 4 4 C 1.38410 * 105.35930 * 180.10904 * 3 2 1 5 5 C 1.47168 * 126.88413 * 179.97438 * 4 3 2 6 6 O 1.21627 * 119.99909 * 184.55441 * 5 4 3 7 7 N 1.34774 * 119.99837 * 4.55001 * 5 4 3 8 8 C 1.46505 * 119.99907 * 174.27170 * 7 5 4 9 9 C 1.53495 * 114.20847 * 154.99808 * 8 7 5 10 10 N 1.47067 * 87.98454 * 87.51784 * 9 8 7 11 11 C 1.34771 * 136.06316 * 207.08139 * 10 9 8 12 12 O 1.21281 * 119.99609 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00580 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47437 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00035 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00581 * 0.02562 * 15 14 13 17 17 C 1.38804 * 120.00177 * 179.72695 * 15 14 13 18 18 N 1.31633 * 119.99790 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00263 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47477 * 89.99974 * 19 17 15 21 21 H 1.48508 * 109.47216 * 209.99874 * 19 17 15 22 22 H 1.48498 * 109.47107 * 329.99769 * 19 17 15 23 23 C 1.47073 * 87.88522 * 27.34356 * 10 9 8 24 24 N 1.36601 * 106.23236 * 359.65247 * 4 3 2 25 25 C 1.46496 * 125.19177 * 180.20539 * 24 4 3 26 26 N 1.28446 * 109.61576 * 0.22931 * 24 4 3 27 27 H 1.09005 * 109.47544 * 270.26253 * 1 2 3 28 28 H 1.09008 * 109.47281 * 30.26466 * 1 2 3 29 29 H 1.09005 * 109.47411 * 150.26426 * 1 2 3 30 30 H 1.07994 * 127.32441 * 0.02785 * 3 2 1 31 31 H 0.96996 * 120.00260 * 354.27278 * 7 5 4 32 32 H 1.09006 * 113.27896 * 21.93068 * 8 7 5 33 33 H 1.09003 * 113.46636 * 332.74210 * 9 8 7 34 34 H 1.09000 * 113.46939 * 202.30252 * 9 8 7 35 35 H 1.09003 * 109.47079 * 60.00196 * 13 11 10 36 36 H 1.09001 * 109.47055 * 300.00384 * 13 11 10 37 37 H 0.97000 * 120.00142 * 180.02562 * 18 17 15 38 38 H 1.09001 * 113.46590 * 87.43178 * 23 10 9 39 39 H 1.08994 * 113.46775 * 217.87764 * 23 10 9 40 40 H 1.08994 * 109.47138 * 84.29286 * 25 24 4 41 41 H 1.08998 * 109.47155 * 204.29419 * 25 24 4 42 42 H 1.09000 * 109.46908 * 324.29072 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3293 1.1289 0.0000 4 6 3.6239 0.6395 -0.0025 5 6 4.8664 1.4281 -0.0041 6 8 5.9424 0.8676 -0.0900 7 7 4.8119 2.7715 0.0895 8 6 6.0481 3.5478 0.2145 9 6 5.9349 4.9959 -0.2818 10 7 5.4723 5.3662 1.0642 11 6 4.6939 6.3318 1.5915 12 8 4.1898 7.1659 0.8696 13 6 4.4499 6.3753 3.0779 14 16 3.3730 7.7757 3.4719 15 6 3.2586 7.5912 5.2204 16 1 3.7781 6.7829 5.7134 17 6 2.5056 8.4885 5.9652 18 7 1.8767 9.4769 5.3651 19 14 2.3849 8.2934 7.8190 20 1 3.4806 9.0559 8.4694 21 1 1.0747 8.8128 8.2871 22 1 2.5032 6.8564 8.1742 23 6 6.2385 4.2229 1.5827 24 7 3.5173 -0.7224 0.0041 25 6 4.6449 -1.6575 0.0084 26 7 2.2774 -1.0578 0.0053 27 1 -0.3634 0.0047 1.0277 28 1 -0.3634 0.8877 -0.5180 29 1 -0.3634 -0.8924 -0.5097 30 1 2.0206 2.1638 0.0004 31 1 3.9543 3.2244 0.0742 32 1 6.9283 3.0180 -0.1500 33 1 5.1774 5.1322 -1.0538 34 1 6.8940 5.4396 -0.5486 35 1 5.4004 6.4896 3.5990 36 1 3.9710 5.4488 3.3947 37 1 1.3508 10.1042 5.8856 38 1 7.2778 4.4628 1.8074 39 1 5.7399 3.7006 2.3992 40 1 4.9899 -1.8058 1.0317 41 1 4.3266 -2.6125 -0.4097 42 1 5.4572 -1.2500 -0.5934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581947300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:44 Heat of formation + Delta-G solvation = 24.412889 kcal Electronic energy + Delta-G solvation = -25969.723707 eV Core-core repulsion = 22078.510983 eV Total energy + Delta-G solvation = -3891.212725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.61485 -41.76605 -40.20427 -38.80608 -35.38028 -34.67134 -34.59633 -32.35918 -31.53173 -30.57621 -29.06009 -27.66772 -26.94777 -26.49915 -24.94697 -22.89675 -21.95485 -20.80463 -20.29778 -19.51302 -18.87422 -18.02045 -17.67305 -17.44109 -16.95161 -16.89126 -16.77687 -16.50369 -15.93917 -15.68156 -15.46074 -14.89016 -14.76373 -14.58319 -14.36423 -14.15695 -14.15188 -13.72436 -13.48445 -13.31868 -13.26967 -13.19251 -13.15169 -13.06163 -12.90269 -12.60271 -12.11151 -11.75427 -11.74731 -11.34794 -11.15453 -10.95709 -10.42989 -10.30439 -10.12885 -9.87143 -9.82314 -8.68632 -8.35980 -6.14290 0.10314 1.20322 1.28480 1.41580 1.42200 1.46968 1.53262 1.56957 1.96644 2.00291 2.05008 2.26116 2.98253 3.15133 3.27589 3.39572 3.46938 3.60322 3.89515 3.99099 4.16550 4.27426 4.30792 4.31039 4.37080 4.44673 4.49364 4.57764 4.59014 4.60619 4.65373 4.73023 4.85535 4.85911 4.97503 5.09988 5.31122 5.40418 5.51036 5.71115 6.18413 6.20119 6.55840 6.85393 7.00609 7.05443 7.09337 8.73200 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.002619 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.534775 B =10689.684250 C =12007.644182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.012 3.988 3 C -0.185 4.185 4 C -0.055 4.055 5 C 0.606 3.394 6 O -0.555 6.555 7 N -0.688 5.688 8 C 0.121 3.879 9 C 0.099 3.901 10 N -0.652 5.652 11 C 0.563 3.437 12 O -0.564 6.564 13 C -0.120 4.120 14 S -0.145 6.145 15 C -0.547 4.547 16 H 0.080 0.920 17 C 0.015 3.985 18 N -0.910 5.910 19 Si 0.997 3.003 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.259 1.259 23 C 0.086 3.914 24 N -0.264 5.264 25 C 0.082 3.918 26 N -0.297 5.297 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.178 0.822 31 H 0.412 0.588 32 H 0.151 0.849 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.272 0.728 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -22.562 -11.998 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.144 4.144 3 C -0.214 4.214 4 C -0.184 4.184 5 C 0.392 3.608 6 O -0.434 6.434 7 N -0.339 5.339 8 C 0.015 3.985 9 C -0.024 4.024 10 N -0.389 5.389 11 C 0.352 3.648 12 O -0.442 6.442 13 C -0.271 4.271 14 S 0.082 5.918 15 C -0.695 4.695 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.546 5.546 19 Si 0.819 3.181 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.183 1.183 23 C -0.038 4.038 24 N -0.052 5.052 25 C -0.057 4.057 26 N -0.132 5.132 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.195 0.805 31 H 0.248 0.752 32 H 0.169 0.831 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.129 0.871 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.706 -22.700 -13.003 27.272 hybrid contribution -0.105 0.473 1.904 1.965 sum 7.602 -22.227 -11.099 25.981 Atomic orbital electron populations 1.20221 0.84476 1.04259 1.03661 1.22567 0.98566 0.88571 1.04689 1.22491 0.90074 1.01359 1.07477 1.21448 0.95892 0.85790 1.15273 1.16783 0.86275 0.82157 0.75558 1.90775 1.30246 1.71107 1.51265 1.45225 1.10590 1.04942 1.73110 1.22315 0.88843 0.91020 0.96314 1.23602 1.02091 0.90976 0.85727 1.49707 1.47663 1.29235 1.12279 1.19515 0.77630 0.78800 0.88825 1.90706 1.51673 1.39330 1.62533 1.23268 1.04544 1.04099 0.95221 1.85537 1.62276 1.35504 1.08501 1.23173 1.36708 1.17495 0.92086 0.90153 1.26104 0.93932 0.93839 1.05117 1.70173 1.30700 1.15383 1.38378 0.84972 0.77977 0.79160 0.75996 1.19306 1.20194 1.18299 1.23926 0.98501 0.83105 0.98231 1.45837 1.05458 1.04630 1.49265 1.22505 0.84835 0.92764 1.05551 1.73141 0.89965 1.28636 1.21421 0.90117 0.88880 0.90530 0.80464 0.75167 0.83133 0.90173 0.85398 0.87888 0.87964 0.91925 0.85266 0.90042 0.88955 0.87137 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.45 71.23 0.74 -0.20 16 2 C 0.01 0.23 7.22 43.05 0.31 0.54 16 3 C -0.19 -3.52 10.44 22.66 0.24 -3.28 16 4 C -0.06 -1.13 6.96 40.79 0.28 -0.85 16 5 C 0.61 11.52 7.79 86.59 0.67 12.19 16 6 O -0.56 -12.09 14.38 -4.12 -0.06 -12.14 16 7 N -0.69 -10.73 5.38 -445.03 -2.40 -13.13 16 8 C 0.12 1.55 4.65 45.55 0.21 1.76 16 9 C 0.10 1.51 8.38 83.18 0.70 2.21 16 10 N -0.65 -15.23 3.69 -857.78 -3.16 -18.40 16 11 C 0.56 20.29 8.10 87.66 0.71 21.00 16 12 O -0.56 -25.64 16.64 -3.03 -0.05 -25.69 16 13 C -0.12 -4.75 5.98 71.23 0.43 -4.32 16 14 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 15 C -0.55 -31.02 9.50 67.96 0.65 -30.37 16 16 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 17 C 0.02 0.85 5.49 84.86 0.47 1.32 16 18 N -0.91 -55.42 13.22 21.65 0.29 -55.14 16 19 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 C 0.09 1.27 8.25 83.27 0.69 1.95 16 24 N -0.26 -5.46 3.75 -356.03 -1.33 -6.80 16 25 C 0.08 1.16 10.71 127.77 1.37 2.53 16 26 N -0.30 -6.69 11.90 -47.50 -0.57 -7.25 16 27 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.18 2.61 7.58 -2.91 -0.02 2.59 16 31 H 0.41 6.37 7.79 -92.71 -0.72 5.65 16 32 H 0.15 1.49 7.40 -2.38 -0.02 1.47 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.52 6.55 -2.39 -0.02 1.51 16 Total: -1.00 -82.79 379.32 1.38 -81.41 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.34 Total: 16.52 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 7.46 Total: 4.48 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -7.17 Total: -100.71 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.11 Total: -37.84 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -82.79 1.38 -81.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581947300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.825 kcal (2) G-P(sol) polarization free energy of solvation -82.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds