Wall clock time and date at job start Tue Mar 31 2020 20:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38802 * 120.42748 * 2 1 4 4 C 1.39495 * 118.26563 * 180.02562 * 3 2 1 5 5 C 1.48455 * 120.55081 * 179.97438 * 4 3 2 6 6 O 1.21477 * 119.99711 * 359.97438 * 5 4 3 7 7 N 1.34769 * 119.99615 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99686 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47068 * 324.99893 * 8 7 5 10 10 C 1.53002 * 109.47411 * 84.99974 * 8 7 5 11 11 C 1.52997 * 109.47212 * 204.99833 * 8 7 5 12 12 N 1.46500 * 109.47170 * 54.99826 * 11 8 7 13 13 C 1.34777 * 120.00168 * 180.02562 * 12 11 8 14 14 O 1.21278 * 119.99916 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99931 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47028 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00098 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99909 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00376 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99430 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00194 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47043 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47236 * 119.99796 * 21 19 17 24 24 H 1.48502 * 109.47137 * 239.99721 * 21 19 17 25 25 N 1.33101 * 118.89705 * 0.25457 * 4 3 2 26 26 C 1.31559 * 120.73695 * 359.48327 * 25 4 3 27 27 N 1.31903 * 121.91858 * 0.53640 * 26 25 4 28 28 H 1.08999 * 109.46980 * 89.99798 * 1 2 3 29 29 H 1.08992 * 109.47107 * 209.99366 * 1 2 3 30 30 H 1.08997 * 109.47081 * 330.00202 * 1 2 3 31 31 H 1.08006 * 120.86526 * 0.04020 * 3 2 1 32 32 H 0.97000 * 120.00680 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.47075 * 59.99363 * 10 8 7 34 34 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.46986 * 300.00092 * 10 8 7 36 36 H 1.08998 * 109.47192 * 174.99746 * 11 8 7 37 37 H 1.09000 * 109.47325 * 294.99862 * 11 8 7 38 38 H 0.97004 * 120.00188 * 0.02562 * 12 11 8 39 39 H 1.09002 * 109.47475 * 299.99556 * 15 13 12 40 40 H 1.09001 * 109.47706 * 59.99630 * 15 13 12 41 41 H 0.97003 * 119.99249 * 179.97438 * 20 19 17 42 42 H 1.07999 * 119.03651 * 180.24520 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6040 1.1442 -0.0005 5 6 4.4063 2.3933 -0.0011 6 8 3.8493 3.4729 -0.0016 7 7 5.7525 2.3294 -0.0022 8 6 6.5442 3.5621 -0.0022 9 1 6.0318 4.3230 -0.5909 10 6 6.7152 4.0586 1.4349 11 6 7.9194 3.2850 -0.6130 12 7 7.7529 2.6976 -1.9447 13 6 8.8359 2.3682 -2.6762 14 8 9.9483 2.5584 -2.2321 15 6 8.6645 1.7645 -4.0463 16 16 10.2914 1.4365 -4.7688 17 6 9.8058 0.7543 -6.3190 18 1 8.7578 0.6538 -6.5603 19 6 10.7699 0.3459 -7.2302 20 7 12.0471 0.4688 -6.9363 21 14 10.2551 -0.3767 -8.8740 22 1 8.7728 -0.4058 -8.9595 23 1 10.7984 0.4595 -9.9743 24 1 10.7847 -1.7588 -8.9949 25 7 4.2028 -0.0445 -0.0062 26 6 3.4954 -1.1537 -0.0011 27 7 2.1764 -1.1397 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6912 2.1442 0.0007 32 1 6.1972 1.4674 -0.0022 33 1 7.2275 3.2976 2.0236 34 1 7.3039 4.9759 1.4348 35 1 5.7355 4.2560 1.8700 36 1 8.4755 4.2188 -0.6947 37 1 8.4668 2.5907 0.0245 38 1 6.8631 2.5458 -2.3001 39 1 8.1078 0.8309 -3.9650 40 1 8.1177 2.4593 -4.6837 41 1 12.7209 0.1831 -7.5730 42 1 4.0097 -2.1034 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584087393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:12 Heat of formation + Delta-G solvation = -30.994834 kcal Electronic energy + Delta-G solvation = -25546.863314 eV Core-core repulsion = 21653.247930 eV Total energy + Delta-G solvation = -3893.615384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73097 -40.12164 -39.09237 -36.64147 -35.09684 -33.70709 -33.13584 -32.43800 -31.38920 -29.41640 -29.16356 -26.17563 -25.61897 -25.31575 -24.19642 -21.93386 -20.93701 -20.37999 -18.88352 -18.02590 -17.65050 -16.65549 -16.34814 -16.26878 -15.95357 -15.94534 -15.57729 -15.05687 -14.97844 -14.81356 -14.34781 -14.07486 -13.73036 -13.52866 -13.49432 -13.14225 -12.95843 -12.94653 -12.89819 -12.58457 -12.29652 -11.83114 -11.45479 -11.36080 -11.07828 -11.04132 -11.02998 -10.83628 -10.76612 -10.11944 -9.82516 -9.81908 -9.61408 -9.44002 -9.09191 -8.97930 -8.24927 -6.51238 -6.22944 -3.93359 0.00930 0.39979 2.28284 2.46261 2.99133 3.05132 3.20883 3.27131 3.31448 3.32677 3.42281 3.49814 3.67777 3.95222 4.19255 4.31345 4.36301 4.44686 4.75796 4.79437 4.89542 4.98649 5.01504 5.11664 5.12433 5.17541 5.29413 5.34121 5.37246 5.48911 5.60486 5.71832 5.79824 5.85019 5.86698 6.00731 6.12302 6.32712 6.50879 6.99334 7.47167 7.58777 7.61954 7.65729 8.34448 8.55040 9.22683 10.84544 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.002465 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.873190 B =11356.995008 C =13366.425542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.177 3.823 3 C -0.170 4.170 4 C 0.132 3.868 5 C 0.573 3.427 6 O -0.523 6.523 7 N -0.702 5.702 8 C 0.129 3.871 9 H 0.099 0.901 10 C -0.161 4.161 11 C 0.113 3.887 12 N -0.740 5.740 13 C 0.533 3.467 14 O -0.516 6.516 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.499 5.499 26 C 0.303 3.697 27 N -0.507 5.507 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.416 0.584 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.518 1.680 18.104 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.029 3.971 3 C -0.193 4.193 4 C -0.015 4.015 5 C 0.356 3.644 6 O -0.398 6.398 7 N -0.354 5.354 8 C 0.025 3.975 9 H 0.117 0.883 10 C -0.220 4.220 11 C -0.011 4.011 12 N -0.395 5.395 13 C 0.319 3.681 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.216 5.216 26 C 0.015 3.985 27 N -0.223 5.223 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.178 0.822 32 H 0.253 0.747 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -20.330 1.947 18.786 27.749 hybrid contribution -2.150 -0.519 -1.759 2.826 sum -22.480 1.428 17.027 28.236 Atomic orbital electron populations 1.20843 0.87083 1.04475 1.04190 1.21888 0.98056 0.87710 0.89398 1.22818 0.94591 1.01455 1.00420 1.21598 0.92071 0.92608 0.95236 1.17790 0.82469 0.87077 0.77026 1.90812 1.71316 1.28206 1.49416 1.45986 1.05462 1.10960 1.73028 1.21386 0.91111 0.86886 0.98144 0.88278 1.22112 1.02953 1.02014 0.94889 1.21617 0.95096 1.00262 0.84173 1.45995 1.09504 1.66389 1.17656 1.20307 0.84048 0.77249 0.86447 1.90709 1.24412 1.52228 1.71606 1.23531 1.08340 1.03098 0.95461 1.85384 0.99573 1.81142 1.17169 1.22904 0.95441 1.47767 1.02182 0.90912 1.24998 0.94491 0.95368 0.98768 1.70030 0.99672 1.44714 1.35849 0.86112 0.78703 0.78689 0.81964 1.19635 1.20553 1.20553 1.68353 1.41905 0.98529 1.12841 1.25045 0.86472 0.96788 0.90229 1.68249 1.10556 1.30480 1.12974 0.89182 0.89525 0.89717 0.82226 0.74724 0.91787 0.90702 0.91575 0.89660 0.90697 0.76778 0.89240 0.89258 0.92230 0.77817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 10.22 36.01 0.37 -0.08 16 2 C 0.18 1.33 6.83 -82.23 -0.56 0.77 16 3 C -0.17 -1.38 9.41 -38.90 -0.37 -1.74 16 4 C 0.13 1.26 6.79 -82.64 -0.56 0.70 16 5 C 0.57 5.84 7.79 -12.05 -0.09 5.74 16 6 O -0.52 -6.44 16.09 5.39 0.09 -6.35 16 7 N -0.70 -6.19 4.51 -54.55 -0.25 -6.44 16 8 C 0.13 1.10 2.73 -67.93 -0.19 0.92 16 9 H 0.10 0.92 7.58 -51.93 -0.39 0.53 16 10 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16 11 C 0.11 1.18 5.23 -4.04 -0.02 1.16 16 12 N -0.74 -9.47 5.39 -60.30 -0.32 -9.79 16 13 C 0.53 9.69 7.85 -10.99 -0.09 9.60 16 14 O -0.52 -11.38 15.86 5.56 0.09 -11.29 16 15 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 17 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 18 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 N -0.50 -4.63 9.70 -11.14 -0.11 -4.74 16 26 C 0.30 2.49 12.27 -92.26 -1.13 1.36 16 27 N -0.51 -4.40 10.36 -10.81 -0.11 -4.52 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.21 8.10 -51.93 -0.42 -0.21 16 31 H 0.16 1.09 7.74 -52.48 -0.41 0.69 16 32 H 0.42 3.57 7.99 -40.82 -0.33 3.25 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.39 8.14 -40.82 -0.33 4.06 16 39 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 40 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.21 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -36.26 383.32 -8.86 -45.12 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.65 Total: 3.23 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.87 Total: 1.79 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.06 Total: -50.87 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.26 -8.86 -45.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584087393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.129 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds