Wall clock time and date at job start Tue Mar 31 2020 20:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38802 * 120.42748 * 2 1 4 4 C 1.39495 * 118.26563 * 180.02562 * 3 2 1 5 5 C 1.48455 * 120.55081 * 179.97438 * 4 3 2 6 6 O 1.21477 * 119.99711 * 359.97438 * 5 4 3 7 7 N 1.34769 * 119.99615 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99686 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47068 * 324.99893 * 8 7 5 10 10 C 1.53002 * 109.47411 * 84.99974 * 8 7 5 11 11 C 1.52997 * 109.47212 * 204.99833 * 8 7 5 12 12 N 1.46500 * 109.47170 * 54.99826 * 11 8 7 13 13 C 1.34777 * 120.00168 * 180.02562 * 12 11 8 14 14 O 1.21278 * 119.99916 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99931 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47028 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00098 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99909 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00376 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99430 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00194 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47043 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47236 * 119.99796 * 21 19 17 24 24 H 1.48502 * 109.47137 * 239.99721 * 21 19 17 25 25 N 1.33101 * 118.89705 * 0.25457 * 4 3 2 26 26 C 1.31559 * 120.73695 * 359.48327 * 25 4 3 27 27 N 1.31903 * 121.91858 * 0.53640 * 26 25 4 28 28 H 1.08999 * 109.46980 * 89.99798 * 1 2 3 29 29 H 1.08992 * 109.47107 * 209.99366 * 1 2 3 30 30 H 1.08997 * 109.47081 * 330.00202 * 1 2 3 31 31 H 1.08006 * 120.86526 * 0.04020 * 3 2 1 32 32 H 0.97000 * 120.00680 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.47075 * 59.99363 * 10 8 7 34 34 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.46986 * 300.00092 * 10 8 7 36 36 H 1.08998 * 109.47192 * 174.99746 * 11 8 7 37 37 H 1.09000 * 109.47325 * 294.99862 * 11 8 7 38 38 H 0.97004 * 120.00188 * 0.02562 * 12 11 8 39 39 H 1.09002 * 109.47475 * 299.99556 * 15 13 12 40 40 H 1.09001 * 109.47706 * 59.99630 * 15 13 12 41 41 H 0.97003 * 119.99249 * 179.97438 * 20 19 17 42 42 H 1.07999 * 119.03651 * 180.24520 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6040 1.1442 -0.0005 5 6 4.4063 2.3933 -0.0011 6 8 3.8493 3.4729 -0.0016 7 7 5.7525 2.3294 -0.0022 8 6 6.5442 3.5621 -0.0022 9 1 6.0318 4.3230 -0.5909 10 6 6.7152 4.0586 1.4349 11 6 7.9194 3.2850 -0.6130 12 7 7.7529 2.6976 -1.9447 13 6 8.8359 2.3682 -2.6762 14 8 9.9483 2.5584 -2.2321 15 6 8.6645 1.7645 -4.0463 16 16 10.2914 1.4365 -4.7688 17 6 9.8058 0.7543 -6.3190 18 1 8.7578 0.6538 -6.5603 19 6 10.7699 0.3459 -7.2302 20 7 12.0471 0.4688 -6.9363 21 14 10.2551 -0.3767 -8.8740 22 1 8.7728 -0.4058 -8.9595 23 1 10.7984 0.4595 -9.9743 24 1 10.7847 -1.7588 -8.9949 25 7 4.2028 -0.0445 -0.0062 26 6 3.4954 -1.1537 -0.0011 27 7 2.1764 -1.1397 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6912 2.1442 0.0007 32 1 6.1972 1.4674 -0.0022 33 1 7.2275 3.2976 2.0236 34 1 7.3039 4.9759 1.4348 35 1 5.7355 4.2560 1.8700 36 1 8.4755 4.2188 -0.6947 37 1 8.4668 2.5907 0.0245 38 1 6.8631 2.5458 -2.3001 39 1 8.1078 0.8309 -3.9650 40 1 8.1177 2.4593 -4.6837 41 1 12.7209 0.1831 -7.5730 42 1 4.0097 -2.1034 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584087393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:11 Heat of formation + Delta-G solvation = -57.414575 kcal Electronic energy + Delta-G solvation = -25548.008960 eV Core-core repulsion = 21653.247930 eV Total energy + Delta-G solvation = -3894.761030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.36774 -41.02830 -40.34626 -37.59690 -35.70791 -34.83837 -34.58717 -33.75603 -32.26627 -30.81254 -29.63614 -27.75229 -26.93648 -26.23028 -24.78849 -22.67458 -21.78032 -21.67086 -19.92512 -19.50184 -18.51993 -17.78132 -17.46509 -17.30500 -16.88866 -16.67085 -16.55209 -16.54058 -16.25719 -15.86807 -15.62355 -15.14722 -14.85404 -14.55163 -14.28837 -14.14622 -13.94858 -13.88150 -13.65695 -13.27487 -13.22460 -13.16878 -13.01019 -12.91838 -12.60465 -12.13169 -12.03947 -11.71954 -11.66487 -11.63933 -11.16567 -11.01734 -10.71171 -10.46954 -10.34646 -10.28693 -10.18566 -8.66989 -8.35763 -6.13311 -0.65946 -0.18155 1.25636 1.40582 1.45628 1.54353 1.57189 1.58028 1.74518 2.22722 2.27323 2.68786 2.78236 2.98497 3.00213 3.30362 3.35410 3.51134 3.73578 3.90775 3.92819 4.02212 4.18978 4.26929 4.31755 4.47939 4.49012 4.55311 4.66938 4.71481 4.74118 4.78458 4.91347 5.00420 5.20064 5.27602 5.31686 5.36939 5.41339 5.71336 6.19156 6.24593 6.39395 6.82039 6.93321 7.05899 7.17685 8.73630 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.002465 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.873190 B =11356.995008 C =13366.425542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.175 3.825 3 C -0.172 4.172 4 C 0.115 3.885 5 C 0.575 3.425 6 O -0.547 6.547 7 N -0.696 5.696 8 C 0.139 3.861 9 H 0.096 0.904 10 C -0.156 4.156 11 C 0.115 3.885 12 N -0.715 5.715 13 C 0.538 3.462 14 O -0.559 6.559 15 C -0.132 4.132 16 S -0.145 6.145 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.910 5.910 21 Si 0.998 3.002 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.273 1.273 25 N -0.511 5.511 26 C 0.295 3.705 27 N -0.521 5.521 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.170 0.830 32 H 0.418 0.582 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.410 0.590 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.271 0.729 42 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.948 1.342 18.033 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.195 4.195 4 C -0.031 4.031 5 C 0.359 3.641 6 O -0.424 6.424 7 N -0.348 5.348 8 C 0.035 3.965 9 H 0.114 0.886 10 C -0.215 4.215 11 C -0.009 4.009 12 N -0.369 5.369 13 C 0.324 3.676 14 O -0.437 6.437 15 C -0.283 4.283 16 S 0.082 5.918 17 C -0.694 4.694 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.198 1.198 25 N -0.228 5.228 26 C 0.008 3.992 27 N -0.237 5.237 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.188 0.812 32 H 0.255 0.745 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.246 0.754 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -22.802 1.612 18.742 29.560 hybrid contribution -1.498 -0.389 -1.622 2.242 sum -24.300 1.223 17.120 29.750 Atomic orbital electron populations 1.20964 0.84741 1.05574 1.05113 1.22426 0.99557 0.87149 0.88106 1.22995 0.94170 1.02237 1.00103 1.21611 0.92689 0.92489 0.96356 1.17895 0.82659 0.87045 0.76502 1.90796 1.71761 1.29085 1.50764 1.45968 1.05212 1.11140 1.72466 1.21308 0.89709 0.86656 0.98855 0.88566 1.22075 1.02893 1.02792 0.93696 1.21767 0.96376 1.00183 0.82591 1.45734 1.08656 1.64554 1.17954 1.19957 0.84454 0.77200 0.86035 1.90701 1.26269 1.54412 1.72343 1.23378 1.03785 1.04626 0.96517 1.85523 1.06222 1.81651 1.18433 1.23223 0.95921 1.47790 1.02462 0.90131 1.26115 0.94361 0.95580 1.03079 1.70185 1.01079 1.45892 1.37501 0.84913 0.78926 0.77794 0.76360 1.18198 1.19910 1.19845 1.68351 1.42239 0.98697 1.13546 1.25559 0.86686 0.97361 0.89642 1.68334 1.10810 1.31056 1.13497 0.88140 0.89197 0.87862 0.81230 0.74453 0.91167 0.89407 0.92202 0.89435 0.90477 0.75352 0.87432 0.87581 0.91963 0.75609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.22 71.24 0.73 0.06 16 2 C 0.18 2.37 6.83 42.64 0.29 2.66 16 3 C -0.17 -2.59 9.41 22.71 0.21 -2.37 16 4 C 0.12 2.09 6.79 41.98 0.29 2.37 16 5 C 0.57 11.14 7.79 86.97 0.68 11.81 16 6 O -0.55 -12.98 16.09 -3.64 -0.06 -13.04 16 7 N -0.70 -11.35 4.51 -444.83 -2.01 -13.36 16 8 C 0.14 2.15 2.73 44.99 0.12 2.28 16 9 H 0.10 1.63 7.58 -2.39 -0.02 1.61 16 10 C -0.16 -2.02 9.48 71.98 0.68 -1.33 16 11 C 0.11 2.21 5.23 86.38 0.45 2.67 16 12 N -0.71 -17.15 5.39 -463.07 -2.49 -19.65 16 13 C 0.54 19.15 7.85 87.66 0.69 19.84 16 14 O -0.56 -24.88 15.86 -3.02 -0.05 -24.93 16 15 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 16 S -0.15 -8.02 20.57 -56.49 -1.16 -9.18 16 17 C -0.55 -31.16 9.50 67.96 0.65 -30.51 16 18 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 19 C 0.01 0.77 5.49 84.86 0.47 1.23 16 20 N -0.91 -55.72 13.22 21.65 0.29 -55.43 16 21 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 N -0.51 -8.98 9.70 -189.17 -1.84 -10.82 16 26 C 0.30 4.52 12.27 180.92 2.22 6.74 16 27 N -0.52 -8.38 10.36 -188.10 -1.95 -10.33 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.26 8.10 -2.39 -0.02 0.24 16 31 H 0.17 2.10 7.74 -2.91 -0.02 2.08 16 32 H 0.42 6.61 7.99 -92.71 -0.74 5.87 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 8.16 8.14 -92.71 -0.75 7.40 16 39 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 40 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 41 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.23 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -79.74 383.32 0.25 -79.50 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.43 Total: 20.90 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 7.91 Total: 10.69 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -8.00 Total: -109.59 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.11 Total: -37.97 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -79.74 0.25 -79.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584087393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.081 kcal (2) G-P(sol) polarization free energy of solvation -79.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds