Wall clock time and date at job start Tue Mar 31 2020 20:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30451 * 125.99177 * 2 1 4 4 N 1.39926 * 108.89714 * 179.97438 * 3 2 1 5 5 H 0.97005 * 125.75263 * 179.97438 * 4 3 2 6 6 C 1.34258 * 108.49369 * 359.75087 * 4 3 2 7 7 C 1.38039 * 107.41639 * 0.39254 * 6 4 3 8 8 C 1.47430 * 126.41267 * 179.86935 * 7 6 4 9 9 O 1.21613 * 119.99801 * 179.68877 * 8 7 6 10 10 N 1.34771 * 120.00249 * 359.69151 * 8 7 6 11 11 C 1.46505 * 120.00236 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47389 * 175.01376 * 11 10 8 13 13 H 1.08996 * 112.74110 * 314.99079 * 12 11 10 14 14 C 1.53500 * 113.46502 * 85.80705 * 12 11 10 15 15 C 1.53497 * 83.34340 * 140.85000 * 14 12 11 16 16 N 1.47068 * 113.46778 * 184.24012 * 12 11 10 17 17 C 1.34777 * 136.05579 * 38.13979 * 16 12 11 18 18 O 1.21274 * 120.00143 * 5.03094 * 17 16 12 19 19 C 1.50702 * 119.99652 * 185.03345 * 17 16 12 20 20 S 1.81005 * 109.46822 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99660 * 179.97438 * 20 19 17 22 22 H 1.07993 * 120.00274 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99690 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99901 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99770 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47320 * 90.00354 * 25 23 21 27 27 H 1.48499 * 109.47004 * 209.99719 * 25 23 21 28 28 H 1.48493 * 109.47397 * 330.00188 * 25 23 21 29 29 H 1.08996 * 109.47278 * 270.00391 * 1 2 3 30 30 H 1.08999 * 109.46826 * 30.00303 * 1 2 3 31 31 H 1.09003 * 109.46807 * 150.00048 * 1 2 3 32 32 H 1.08009 * 126.29372 * 180.24157 * 6 4 3 33 33 H 0.97000 * 120.00579 * 359.97438 * 10 8 7 34 34 H 1.09006 * 109.46645 * 295.01616 * 11 10 8 35 35 H 1.09001 * 109.46850 * 55.00886 * 11 10 8 36 36 H 1.09006 * 114.20292 * 254.43458 * 14 12 11 37 37 H 1.09000 * 114.20635 * 27.25835 * 14 12 11 38 38 H 1.09000 * 113.46745 * 219.15478 * 15 14 12 39 39 H 1.08993 * 113.47042 * 88.71277 * 15 14 12 40 40 H 1.08996 * 109.47338 * 299.99782 * 19 17 16 41 41 H 1.09001 * 109.47352 * 59.99814 * 19 17 16 42 42 H 0.97006 * 119.99814 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 1 4.3842 1.2300 0.0004 6 6 3.6439 -0.6980 0.0065 7 6 2.3372 -1.1432 0.0006 8 6 1.8916 -2.5486 0.0013 9 8 0.7038 -2.8097 0.0014 10 7 2.8003 -3.5438 0.0018 11 6 2.3574 -4.9403 0.0018 12 6 3.5730 -5.8609 -0.1229 13 1 4.2767 -5.5285 -0.8860 14 6 4.2364 -6.1832 1.2233 15 6 4.3901 -7.5818 0.6099 16 7 3.2208 -7.2847 -0.2312 17 6 2.2529 -8.0016 -0.8359 18 8 1.4514 -7.4493 -1.5593 19 6 2.1666 -9.4895 -0.6129 20 16 0.7729 -10.1606 -1.5529 21 6 0.9048 -11.8639 -1.1215 22 1 1.6886 -12.1931 -0.4555 23 6 0.0007 -12.7823 -1.6370 24 7 -0.9554 -12.3807 -2.4476 25 14 0.1401 -14.5879 -1.1791 26 1 -0.6656 -14.8531 0.0399 27 1 -0.3659 -15.4228 -2.2981 28 1 1.5624 -14.9233 -0.9151 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 4.5297 -1.3159 0.0121 33 1 3.7477 -3.3355 0.0014 34 1 1.8330 -5.1550 0.9330 35 1 1.6862 -5.1085 -0.8403 36 1 5.1795 -5.6633 1.3926 37 1 3.5594 -6.1412 2.0766 38 1 4.2187 -8.3893 1.3218 39 1 5.3121 -7.7081 0.0425 40 1 3.0910 -9.9611 -0.9465 41 1 2.0189 -9.6900 0.4482 42 1 -1.5871 -13.0227 -2.8081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584751789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:42 Heat of formation + Delta-G solvation = 6.900694 kcal Electronic energy + Delta-G solvation = -25573.523377 eV Core-core repulsion = 21681.551266 eV Total energy + Delta-G solvation = -3891.972111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.41903 -41.54950 -40.05373 -38.85780 -35.79583 -34.59982 -33.94008 -32.33132 -31.58988 -29.43965 -29.34540 -28.71994 -27.65511 -24.73825 -23.57920 -23.11470 -21.58896 -20.90961 -20.23884 -19.64932 -19.25665 -18.00960 -17.53562 -17.25427 -16.89633 -16.69681 -16.53079 -16.23788 -15.71988 -15.66967 -15.42563 -15.22304 -14.77071 -14.58840 -14.36615 -13.97416 -13.85552 -13.77508 -13.75508 -13.36977 -13.16276 -12.98666 -12.91848 -12.88578 -12.61572 -12.36353 -11.99628 -11.74487 -11.61173 -11.15420 -10.96779 -10.81396 -10.53340 -10.29468 -10.22860 -9.77115 -9.73924 -8.69859 -8.35516 -6.14897 0.55794 1.06162 1.19340 1.41486 1.42427 1.54337 1.57476 1.78296 1.91150 2.26315 2.39057 2.44197 2.98436 3.21723 3.37858 3.48081 3.70051 3.76725 3.80255 4.05410 4.08184 4.21208 4.25785 4.29863 4.44660 4.47671 4.52970 4.64695 4.72220 4.75156 4.79337 4.87682 4.96467 5.03631 5.08037 5.31809 5.40054 5.42383 5.46470 6.18526 6.29096 6.46604 6.64512 6.68326 7.05062 7.13372 7.34572 8.73852 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.001983 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.154326 B =14118.630593 C =15052.725108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.115 3.885 3 N -0.328 5.328 4 N -0.445 5.445 5 H 0.463 0.537 6 C 0.147 3.853 7 C -0.322 4.322 8 C 0.587 3.413 9 O -0.590 6.590 10 N -0.701 5.701 11 C 0.123 3.877 12 C 0.121 3.879 13 H 0.126 0.874 14 C -0.123 4.123 15 C 0.093 3.907 16 N -0.652 5.652 17 C 0.555 3.445 18 O -0.567 6.567 19 C -0.116 4.116 20 S -0.157 6.157 21 C -0.545 4.545 22 H 0.084 0.916 23 C 0.011 3.989 24 N -0.912 5.912 25 Si 1.002 2.998 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.256 1.256 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.245 0.755 33 H 0.420 0.580 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.719 23.655 11.193 34.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 N -0.152 5.152 4 N -0.151 5.151 5 H 0.312 0.688 6 C -0.008 4.008 7 C -0.337 4.337 8 C 0.376 3.624 9 O -0.471 6.471 10 N -0.355 5.355 11 C -0.003 4.003 12 C 0.018 3.982 13 H 0.143 0.857 14 C -0.160 4.160 15 C -0.028 4.028 16 N -0.389 5.389 17 C 0.344 3.656 18 O -0.445 6.445 19 C -0.267 4.267 20 S 0.070 5.930 21 C -0.693 4.693 22 H 0.102 0.898 23 C -0.194 4.194 24 N -0.549 5.549 25 Si 0.823 3.177 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.179 1.179 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.261 0.739 33 H 0.258 0.742 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.161 0.839 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.439 25.387 9.918 34.068 hybrid contribution 0.760 -2.271 0.483 2.443 sum 21.199 23.116 10.401 33.044 Atomic orbital electron populations 1.20297 0.86267 1.03567 1.03677 1.22647 0.97784 0.89594 0.95211 1.77139 0.87931 1.22504 1.27584 1.46154 1.07320 1.06216 1.55385 0.68836 1.23845 0.98816 0.85611 0.92496 1.20207 0.94142 0.92809 1.26577 1.17655 0.85136 0.84721 0.74879 1.90786 1.18875 1.84992 1.52451 1.45286 1.10272 1.04180 1.75768 1.21264 0.97121 0.80889 1.00993 1.23197 0.94284 0.80580 1.00152 0.85693 1.23567 1.03312 0.95076 0.94052 1.23375 0.87557 0.99818 0.92011 1.49828 1.27269 1.09451 1.52361 1.19697 0.80069 0.87888 0.77909 1.90713 1.42957 1.72456 1.38374 1.23246 1.03964 0.94382 1.05119 1.85677 1.37386 1.06934 1.62955 1.23183 1.18964 0.92499 1.34610 0.89812 1.26192 0.93801 1.05177 0.94209 1.70200 1.16429 1.37069 1.31156 0.84908 0.79318 0.75427 0.78032 1.19315 1.20269 1.17942 0.89856 0.89925 0.90779 0.73901 0.74188 0.92675 0.94645 0.83897 0.88915 0.89564 0.86646 0.87518 0.87804 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 9.92 71.24 0.71 -1.02 16 2 C 0.11 2.46 7.26 43.51 0.32 2.78 16 3 N -0.33 -6.01 12.63 -46.67 -0.59 -6.59 16 4 N -0.44 -3.52 7.29 -56.31 -0.41 -3.93 16 5 H 0.46 -0.15 8.96 -213.43 -1.91 -2.07 16 6 C 0.15 0.91 11.52 84.27 0.97 1.88 16 7 C -0.32 -5.78 6.13 -20.15 -0.12 -5.90 16 8 C 0.59 14.14 7.81 86.67 0.68 14.82 16 9 O -0.59 -21.04 14.92 -4.07 -0.06 -21.11 16 10 N -0.70 -11.46 5.54 -466.35 -2.58 -14.04 16 11 C 0.12 2.97 5.47 86.38 0.47 3.44 16 12 C 0.12 1.97 4.07 41.79 0.17 2.14 16 13 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 14 C -0.12 -0.89 8.02 30.93 0.25 -0.64 16 15 C 0.09 1.16 8.42 83.18 0.70 1.86 16 16 N -0.65 -16.46 3.57 -833.70 -2.97 -19.43 16 17 C 0.56 21.77 7.97 87.66 0.70 22.47 16 18 O -0.57 -28.22 15.46 -3.01 -0.05 -28.26 16 19 C -0.12 -4.82 5.99 71.24 0.43 -4.39 16 20 S -0.16 -9.04 20.57 -56.49 -1.16 -10.20 16 21 C -0.54 -31.71 9.50 67.96 0.65 -31.06 16 22 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 23 C 0.01 0.63 5.49 84.86 0.47 1.09 16 24 N -0.91 -57.26 13.22 21.65 0.29 -56.97 16 25 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.97 6.55 -2.39 -0.02 1.95 16 32 H 0.25 -1.61 7.46 -2.91 -0.02 -1.63 16 33 H 0.42 2.04 7.40 -92.71 -0.69 1.36 16 34 H 0.05 1.51 7.89 -2.38 -0.02 1.49 16 35 H 0.04 1.28 7.14 -2.39 -0.02 1.26 16 36 H 0.14 -0.30 8.14 -2.38 -0.02 -0.32 16 37 H 0.09 0.88 7.95 -2.39 -0.02 0.86 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 41 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 42 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -101.24 376.25 -0.66 -101.89 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -1.52 Total: 5.06 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 6.37 Total: 7.46 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -6.27 Total: -100.97 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.11 Total: -49.37 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.16 Total: -10.20 kcal Total: -101.24 -0.66 -101.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584751789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.796 kcal (2) G-P(sol) polarization free energy of solvation -101.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds