Wall clock time and date at job start Tue Mar 31 2020 20:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35564 * 125.82540 * 2 1 4 4 N 1.35400 * 107.16139 * 179.74817 * 3 2 1 5 5 H 0.97001 * 126.43742 * 180.24305 * 4 3 2 6 6 C 1.36666 * 107.12307 * 0.35569 * 4 3 2 7 7 C 1.47401 * 125.86434 * 179.89233 * 6 4 3 8 8 O 1.21599 * 120.00360 * 359.72767 * 7 6 4 9 9 N 1.34780 * 119.99879 * 179.71919 * 7 6 4 10 10 C 1.47066 * 136.05524 * 180.02562 * 9 7 6 11 11 C 1.53503 * 87.98596 * 207.08426 * 10 9 7 12 12 N 1.46491 * 114.20774 * 220.34520 * 11 10 9 13 13 C 1.46499 * 120.00161 * 59.99980 * 12 11 10 14 14 C 1.34782 * 120.00198 * 239.99746 * 12 11 10 15 15 O 1.21284 * 119.99574 * 0.02562 * 14 12 11 16 16 C 1.50694 * 120.00200 * 180.02562 * 14 12 11 17 17 S 1.81001 * 109.47139 * 179.97438 * 16 14 12 18 18 C 1.76200 * 100.00234 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99647 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00169 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00101 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99896 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46644 * 90.00343 * 22 20 18 24 24 H 1.48499 * 109.46893 * 210.00054 * 22 20 18 25 25 H 1.48500 * 109.47266 * 330.00217 * 22 20 18 26 26 C 1.47060 * 136.05896 * 359.95598 * 9 7 6 27 27 N 1.31620 * 108.26882 * 359.63773 * 6 4 3 28 28 H 1.08997 * 109.47323 * 269.99666 * 1 2 3 29 29 H 1.08993 * 109.46940 * 30.00508 * 1 2 3 30 30 H 1.08998 * 109.46789 * 150.00170 * 1 2 3 31 31 H 1.08003 * 126.41644 * 0.02562 * 3 2 1 32 32 H 1.09000 * 113.46827 * 321.86030 * 10 9 7 33 33 H 1.09003 * 113.47151 * 92.30820 * 10 9 7 34 34 H 1.08999 * 114.20584 * 87.51845 * 11 10 9 35 35 H 1.09001 * 109.47473 * 90.00054 * 13 12 11 36 36 H 1.09000 * 109.47269 * 209.99544 * 13 12 11 37 37 H 1.08994 * 109.47260 * 329.99716 * 13 12 11 38 38 H 1.08994 * 109.47426 * 300.00390 * 16 14 12 39 39 H 1.09001 * 109.47207 * 60.00650 * 16 14 12 40 40 H 0.97004 * 119.99928 * 179.97438 * 21 20 18 41 41 H 1.09006 * 113.47077 * 267.69492 * 26 9 7 42 42 H 1.08996 * 113.47134 * 38.12970 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5833 0.6659 0.0057 5 1 4.3788 1.2208 0.0104 6 6 3.5466 -0.7003 0.0010 7 6 4.7175 -1.5957 0.0023 8 8 5.8401 -1.1285 0.0029 9 7 4.5437 -2.9322 0.0028 10 6 5.4193 -4.1138 0.0045 11 6 4.2906 -4.8841 -0.6948 12 7 4.1120 -6.2561 -0.2136 13 6 3.7867 -6.5025 1.1934 14 6 4.2467 -7.2919 -1.0655 15 8 4.5164 -7.0880 -2.2302 16 6 4.0624 -8.7033 -0.5707 17 16 4.3054 -9.8599 -1.9416 18 6 4.0382 -11.3872 -1.1046 19 1 3.8034 -11.3913 -0.0504 20 6 4.1296 -12.5849 -1.8000 21 7 3.9304 -13.7259 -1.1745 22 14 4.5351 -12.5776 -3.6235 23 1 6.0075 -12.6478 -3.8033 24 1 3.9002 -13.7506 -4.2763 25 1 4.0199 -11.3288 -4.2402 26 6 3.3953 -3.8508 0.0033 27 7 2.2861 -1.0792 0.0006 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9711 2.1277 0.0004 32 1 6.3103 -3.9948 -0.6120 33 1 5.6443 -4.4860 1.0040 34 1 4.3018 -4.8043 -1.7818 35 1 2.7041 -6.5112 1.3200 36 1 4.1957 -7.4660 1.4975 37 1 4.2183 -5.7138 1.8096 38 1 4.7898 -8.9113 0.2139 39 1 3.0546 -8.8199 -0.1719 40 1 3.9939 -14.5629 -1.6606 41 1 3.0814 -4.1529 1.0025 42 1 2.5650 -3.5080 -0.6141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585345051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:15 Heat of formation + Delta-G solvation = 40.152638 kcal Electronic energy + Delta-G solvation = -25862.426427 eV Core-core repulsion = 21971.896229 eV Total energy + Delta-G solvation = -3890.530198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.71603 -40.97794 -39.24366 -37.95663 -34.90425 -33.70431 -32.44575 -31.99767 -30.34421 -28.74827 -27.42555 -26.99635 -26.28720 -25.62645 -23.88211 -21.91597 -20.74725 -20.08862 -19.35137 -18.45450 -17.73341 -17.27449 -16.98232 -16.36695 -16.24329 -15.80431 -15.53276 -15.02184 -14.74047 -14.54819 -14.16872 -13.87867 -13.53822 -13.48011 -13.21816 -13.17786 -13.11071 -13.02064 -12.80196 -12.63831 -12.42728 -12.24224 -12.10253 -11.30166 -11.25887 -11.01181 -10.78880 -10.65589 -10.58056 -10.54818 -9.86703 -9.57587 -9.22095 -9.01011 -8.84357 -8.72118 -8.50706 -6.93421 -6.29600 -4.01681 0.90376 1.87682 2.09189 2.59836 2.80064 2.87672 2.96945 3.21481 3.33220 3.50381 3.57044 3.65726 4.08229 4.30311 4.32645 4.50933 4.57241 4.59326 4.74384 4.82122 4.91322 5.00972 5.09500 5.17906 5.20072 5.25211 5.29577 5.30427 5.35373 5.44378 5.51758 5.58844 5.63086 5.73375 5.81857 5.97996 6.14643 6.40400 6.64414 7.14050 7.26334 7.32437 7.67305 7.93299 8.32610 8.40693 9.16602 10.79480 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.002042 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.527915 B =13708.201221 C =14037.646072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.001 4.001 3 C -0.022 4.022 4 N -0.524 5.524 5 H 0.430 0.570 6 C 0.152 3.848 7 C 0.639 3.361 8 O -0.541 6.541 9 N -0.620 5.620 10 C 0.093 3.907 11 C 0.115 3.885 12 N -0.610 5.610 13 C 0.072 3.928 14 C 0.536 3.464 15 O -0.513 6.513 16 C -0.121 4.121 17 S -0.143 6.143 18 C -0.521 4.521 19 H 0.089 0.911 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.099 3.901 27 N -0.433 5.433 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.187 0.813 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.271 0.729 41 H 0.094 0.906 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 30.024 7.030 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.135 4.135 3 C -0.161 4.161 4 N -0.126 5.126 5 H 0.270 0.730 6 C -0.109 4.109 7 C 0.427 3.573 8 O -0.417 6.417 9 N -0.354 5.354 10 C -0.030 4.030 11 C 0.009 3.991 12 N -0.345 5.345 13 C -0.071 4.071 14 C 0.324 3.676 15 O -0.386 6.386 16 C -0.271 4.271 17 S 0.083 5.917 18 C -0.668 4.668 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.025 4.025 27 N -0.157 5.157 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.204 0.796 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.155 0.845 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.221 29.729 5.300 30.491 hybrid contribution 0.465 0.718 0.924 1.259 sum -3.756 30.447 6.224 31.303 Atomic orbital electron populations 1.20078 0.86832 1.03172 1.02590 1.20978 0.97151 0.87924 1.07454 1.22770 0.82883 1.01155 1.09339 1.42880 1.09296 1.07420 1.53005 0.72997 1.22370 0.93549 0.82146 1.12877 1.15706 0.85468 0.79471 0.76686 1.90865 1.24010 1.74763 1.52087 1.48664 1.12804 1.02560 1.71405 1.23632 0.96548 0.80908 1.01923 1.22752 0.95016 0.80376 1.00995 1.47657 1.71985 1.04670 1.10225 1.21886 1.01317 1.02978 0.80898 1.20381 0.75467 0.86221 0.85530 1.90708 1.45799 1.85067 1.17053 1.23318 1.05702 0.93589 1.04513 1.84825 1.93335 1.00288 1.13233 1.22295 1.55667 0.89683 0.99181 0.89342 1.24713 0.93436 0.94350 0.98825 1.69938 1.47323 0.97496 1.36868 0.86738 0.79971 0.80100 0.85062 1.19222 1.19962 1.15900 1.23568 0.91501 0.85414 1.01984 1.70174 0.99060 1.30813 1.15644 0.91092 0.91042 0.90722 0.79578 0.89258 0.88844 0.84545 0.91921 0.89955 0.91138 0.88328 0.88242 0.91937 0.88814 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.42 36.01 0.38 0.01 16 2 C 0.00 -0.01 7.07 -83.00 -0.59 -0.59 16 3 C -0.02 -0.14 11.91 -16.93 -0.20 -0.34 16 4 N -0.52 -3.95 6.14 -10.78 -0.07 -4.02 16 5 H 0.43 2.32 8.96 -40.82 -0.37 1.95 16 6 C 0.15 1.61 7.93 -154.52 -1.22 0.39 16 7 C 0.64 7.82 8.06 -12.53 -0.10 7.71 16 8 O -0.54 -7.85 17.87 5.28 0.09 -7.76 16 9 N -0.62 -6.74 3.69 -186.53 -0.69 -7.43 16 10 C 0.09 0.94 8.18 -8.51 -0.07 0.87 16 11 C 0.11 1.25 4.56 -67.80 -0.31 0.94 16 12 N -0.61 -7.31 3.11 -173.71 -0.54 -7.85 16 13 C 0.07 0.61 8.91 59.85 0.53 1.14 16 14 C 0.54 9.02 7.69 -10.99 -0.08 8.93 16 15 O -0.51 -10.55 15.38 5.55 0.09 -10.46 16 16 C -0.12 -2.22 4.71 36.00 0.17 -2.05 16 17 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 18 C -0.52 -14.68 10.04 30.94 0.31 -14.37 16 19 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 20 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 21 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 22 Si 0.86 21.55 27.74 -169.99 -4.71 16.84 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 26 C 0.10 0.92 7.17 -8.51 -0.06 0.86 16 27 N -0.43 -4.58 9.70 -7.50 -0.07 -4.65 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.19 0.38 8.06 -52.48 -0.42 -0.04 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.79 6.97 -51.93 -0.36 0.43 16 34 H 0.14 1.74 7.30 -51.93 -0.38 1.36 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.71 6.44 -51.93 -0.33 0.37 16 37 H 0.07 0.44 6.18 -51.93 -0.32 0.12 16 38 H 0.10 1.67 7.40 -51.92 -0.38 1.28 16 39 H 0.10 1.69 8.11 -51.91 -0.42 1.27 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.09 0.73 6.56 -51.93 -0.34 0.39 16 42 H 0.10 0.98 7.46 -51.93 -0.39 0.60 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -36.92 369.74 -8.30 -45.22 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.41 Total: -0.65 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.35 Total: 6.16 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.59 Total: -49.38 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.18 Total: -18.22 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.92 -8.30 -45.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585345051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.373 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds