Wall clock time and date at job start Tue Mar 31 2020 21:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46976 * 2 1 4 4 C 1.50700 * 109.47130 * 299.99844 * 3 2 1 5 5 O 1.20830 * 119.99964 * 0.02562 * 4 3 2 6 6 O 1.34230 * 120.00090 * 180.02562 * 4 3 2 7 7 N 1.46497 * 109.47186 * 120.00285 * 2 1 3 8 8 C 1.34780 * 120.00171 * 173.75474 * 7 2 1 9 9 O 1.21591 * 119.99663 * 4.95906 * 8 7 2 10 10 N 1.34769 * 120.00166 * 184.96094 * 8 7 2 11 11 C 1.46502 * 120.00106 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47237 * 34.99857 * 11 10 8 13 13 C 1.50697 * 109.47207 * 155.00136 * 11 10 8 14 14 H 1.08001 * 120.00337 * 5.73931 * 13 11 10 15 15 C 1.37883 * 119.99922 * 185.74539 * 13 11 10 16 16 N 1.31509 * 119.99680 * 21.56952 * 15 13 11 17 17 Si 1.86798 * 119.99939 * 201.84483 * 15 13 11 18 18 H 1.48500 * 109.47040 * 179.72066 * 17 15 13 19 19 H 1.48495 * 109.47459 * 299.72939 * 17 15 13 20 20 H 1.48503 * 109.46863 * 59.72440 * 17 15 13 21 21 C 1.52997 * 109.46942 * 274.99689 * 11 10 8 22 22 F 1.39895 * 109.47437 * 294.71657 * 21 11 10 23 23 F 1.39908 * 109.47197 * 54.71386 * 21 11 10 24 24 F 1.39900 * 109.47415 * 174.71194 * 21 11 10 25 25 C 1.53003 * 109.46801 * 239.99826 * 2 1 3 26 26 C 1.52995 * 117.49967 * 8.80426 * 25 2 1 27 27 C 1.52994 * 117.50023 * 300.17717 * 25 2 1 28 28 H 1.09003 * 109.47089 * 300.00318 * 1 2 3 29 29 H 1.09000 * 109.47065 * 60.00009 * 1 2 3 30 30 H 1.08996 * 109.47597 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47576 * 60.00422 * 3 2 1 32 32 H 1.09001 * 109.46865 * 180.02562 * 3 2 1 33 33 H 0.96699 * 116.99813 * 180.02562 * 6 4 3 34 34 H 0.97000 * 119.99932 * 353.74405 * 7 2 1 35 35 H 0.97004 * 120.00056 * 359.97438 * 10 8 7 36 36 H 0.96997 * 120.00458 * 355.99278 * 16 15 13 37 37 H 1.08997 * 115.54922 * 154.50376 * 25 2 1 38 38 H 1.09004 * 117.50152 * 359.97438 * 26 25 2 39 39 H 1.09001 * 117.50418 * 145.01844 * 26 25 2 40 40 H 1.09004 * 117.49799 * 214.98044 * 27 25 2 41 41 H 1.08996 * 117.49855 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1529 -1.2305 5 8 0.8426 1.5658 -2.0256 6 8 1.8623 3.4378 -1.4432 7 7 2.0183 -0.6906 1.1961 8 6 3.3369 -0.9249 1.3479 9 8 4.1297 -0.4848 0.5379 10 7 3.7766 -1.6471 2.3974 11 6 5.2098 -1.9022 2.5621 12 1 5.7749 -1.0357 2.2187 13 6 5.5112 -2.1542 4.0170 14 1 4.7047 -2.2190 4.7323 15 6 6.8169 -2.3017 4.4350 16 7 7.7993 -1.8204 3.7051 17 14 7.1906 -3.1921 6.0340 18 1 8.6592 -3.2217 6.2525 19 1 6.5366 -2.4805 7.1614 20 1 6.6732 -4.5820 5.9592 21 6 5.6072 -3.1291 1.7391 22 9 4.9732 -4.2635 2.2570 23 9 5.2176 -2.9441 0.4081 24 9 6.9942 -3.3018 1.7992 25 6 2.0399 -0.7213 -1.2493 26 6 1.0109 -1.0980 -2.3170 27 6 1.6322 -2.1840 -1.4364 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.5162 3.8510 -2.2461 34 1 1.3927 -0.9792 1.8789 35 1 3.1441 -1.9979 3.0438 36 1 7.6103 -1.4133 2.8453 37 1 3.0335 -0.4284 -1.5886 38 1 -0.0294 -0.8323 -2.1294 39 1 1.3274 -1.0529 -3.3591 40 1 2.3575 -2.8534 -1.8991 41 1 1.0004 -2.6323 -0.6697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592290268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:10 Heat of formation + Delta-G solvation = -264.924953 kcal Electronic energy + Delta-G solvation = -31955.704044 eV Core-core repulsion = 27035.042326 eV Total energy + Delta-G solvation = -4920.661718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.75377 -48.28160 -48.23989 -42.00438 -40.80091 -39.07275 -36.93721 -36.66690 -35.47722 -34.55245 -32.48133 -29.78299 -29.15635 -26.46933 -25.23264 -23.88733 -23.20453 -22.61994 -22.11304 -20.42126 -19.78485 -19.33425 -19.07970 -18.96687 -18.82564 -18.20899 -17.72435 -16.96206 -16.66555 -16.53270 -15.92624 -15.67595 -15.53768 -15.26492 -15.18114 -15.09117 -14.77428 -14.71587 -14.53572 -14.44588 -14.28457 -14.04085 -13.70414 -13.51393 -13.24784 -13.23113 -12.94920 -12.61631 -12.51829 -12.36090 -12.08321 -12.04769 -11.90937 -11.43909 -11.37398 -11.28409 -11.08722 -10.71704 -10.43709 -10.32309 -9.89313 -8.82169 -6.57718 1.27171 1.52305 1.59500 1.65619 1.85372 2.01301 2.28633 2.37140 2.51948 2.93778 2.96531 3.33712 3.48275 3.50189 3.64288 3.71485 3.83520 3.94648 4.14321 4.23757 4.38369 4.50582 4.55176 4.63608 4.69844 4.78822 4.89644 4.98456 5.09457 5.21536 5.25555 5.35582 5.37377 5.42894 5.56450 5.74324 6.02812 6.14251 6.34216 7.07927 7.13618 7.23897 7.66747 8.53375 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.003641 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.053322 B = 7688.544830 C = 8152.500276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.242 3.758 3 C -0.128 4.128 4 C 0.491 3.509 5 O -0.514 6.514 6 O -0.519 6.519 7 N -0.720 5.720 8 C 0.701 3.299 9 O -0.616 6.616 10 N -0.717 5.717 11 C 0.262 3.738 12 H 0.044 0.956 13 C -0.639 4.639 14 H 0.086 0.914 15 C -0.005 4.005 16 N -0.884 5.884 17 Si 1.114 2.886 18 H -0.287 1.287 19 H -0.258 1.258 20 H -0.270 1.270 21 C 0.413 3.587 22 F -0.190 7.190 23 F -0.204 7.204 24 F -0.193 7.193 25 C -0.158 4.158 26 C -0.131 4.131 27 C -0.182 4.182 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.427 0.573 34 H 0.413 0.587 35 H 0.410 0.590 36 H 0.262 0.738 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.735 5.002 -5.065 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.156 3.844 3 C -0.167 4.167 4 C 0.333 3.667 5 O -0.404 6.404 6 O -0.333 6.333 7 N -0.377 5.377 8 C 0.401 3.599 9 O -0.496 6.496 10 N -0.371 5.371 11 C 0.153 3.847 12 H 0.062 0.938 13 C -0.675 4.675 14 H 0.104 0.896 15 C -0.211 4.211 16 N -0.516 5.516 17 Si 0.934 3.066 18 H -0.213 1.213 19 H -0.183 1.183 20 H -0.195 1.195 21 C 0.357 3.643 22 F -0.171 7.171 23 F -0.185 7.185 24 F -0.175 7.175 25 C -0.177 4.177 26 C -0.168 4.168 27 C -0.219 4.219 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.112 0.888 33 H 0.289 0.711 34 H 0.250 0.750 35 H 0.246 0.754 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.835 4.629 -4.704 17.155 hybrid contribution -0.995 0.126 -1.560 1.854 sum -16.830 4.755 -6.263 18.576 Atomic orbital electron populations 1.22425 0.90122 1.04359 1.05124 1.19266 0.95037 0.87828 0.82290 1.21788 1.03954 0.95368 0.95606 1.23023 0.76591 0.79912 0.87160 1.90653 1.36478 1.66502 1.46726 1.84518 1.72400 1.26599 1.49787 1.45066 1.04842 1.63408 1.24405 1.16202 0.83487 0.78883 0.81293 1.90859 1.55681 1.57371 1.45664 1.44859 1.07660 1.56668 1.27871 1.19131 0.80631 0.88832 0.96143 0.93817 1.21939 0.96573 1.58309 0.90697 0.89592 1.27359 0.92141 0.93891 1.07755 1.70872 1.36395 1.31396 1.12889 0.82989 0.76243 0.76172 0.71212 1.21261 1.18277 1.19541 1.23166 0.74194 0.88767 0.78158 1.93020 1.82101 1.55162 1.86857 1.93102 1.90910 1.95411 1.39105 1.93112 1.32003 1.96163 1.96232 1.22319 0.98854 0.98113 0.98423 1.22963 0.98893 0.99974 0.94947 1.22881 1.03722 0.91365 1.03906 0.89999 0.88267 0.90583 0.85799 0.88764 0.71110 0.74997 0.75356 0.92726 0.91281 0.86363 0.89979 0.91195 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 6.91 71.98 0.50 -2.15 16 2 C 0.24 5.72 0.62 3.60 0.00 5.72 16 3 C -0.13 -3.07 4.88 29.85 0.15 -2.92 16 4 C 0.49 10.61 7.76 71.24 0.55 11.17 16 5 O -0.51 -11.94 11.81 21.95 0.26 -11.68 16 6 O -0.52 -9.03 13.42 -51.42 -0.69 -9.72 16 7 N -0.72 -18.31 4.99 -438.01 -2.18 -20.50 16 8 C 0.70 25.73 7.39 179.06 1.32 27.06 16 9 O -0.62 -27.65 11.83 -4.00 -0.05 -27.69 16 10 N -0.72 -27.58 5.03 -461.43 -2.32 -29.90 16 11 C 0.26 12.70 1.93 44.24 0.09 12.78 16 12 H 0.04 2.46 6.57 -2.39 -0.02 2.44 16 13 C -0.64 -31.87 8.20 25.60 0.21 -31.66 16 14 H 0.09 3.98 7.81 -2.91 -0.02 3.96 16 15 C -0.01 -0.27 4.69 84.66 0.40 0.13 16 16 N -0.88 -50.77 12.45 21.45 0.27 -50.50 16 17 Si 1.11 45.81 29.96 68.60 2.06 47.87 16 18 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 21 C 0.41 20.63 2.82 71.98 0.20 20.83 16 22 F -0.19 -8.97 16.87 44.97 0.76 -8.21 16 23 F -0.20 -10.09 15.54 44.97 0.70 -9.39 16 24 F -0.19 -10.52 14.25 44.97 0.64 -9.88 16 25 C -0.16 -4.55 2.97 -10.80 -0.03 -4.59 16 26 C -0.13 -3.12 7.89 30.59 0.24 -2.87 16 27 C -0.18 -4.92 9.77 30.59 0.30 -4.62 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.74 4.50 -2.39 -0.01 1.73 16 30 H 0.08 1.11 7.07 -2.39 -0.02 1.09 16 31 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.09 2.97 6.47 -2.39 -0.02 2.95 16 33 H 0.43 3.36 9.10 -74.06 -0.67 2.69 16 34 H 0.41 7.59 8.50 -92.71 -0.79 6.80 16 35 H 0.41 13.14 8.54 -92.71 -0.79 12.34 16 36 H 0.26 15.64 6.13 -92.71 -0.57 15.07 16 37 H 0.07 2.57 7.37 -2.39 -0.02 2.55 16 38 H 0.12 2.39 5.77 -2.39 -0.01 2.37 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.10 2.45 7.59 -2.39 -0.02 2.43 16 Total: -1.00 -69.43 341.31 2.45 -66.97 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.91 Total: 33.77 kcal Atomic # 6 Polarization: 24.94 SS G_CDS: 3.93 Total: 28.87 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -4.24 Total: -100.90 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -0.48 Total: -49.09 kcal Atomic # 9 Polarization: -29.59 SS G_CDS: 2.10 Total: -27.49 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.06 Total: 47.87 kcal Total: -69.43 2.45 -66.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592290268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.952 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds