Wall clock time and date at job start Tue Mar 31 2020 21:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46948 * 2 1 4 4 C 1.50707 * 109.46846 * 60.00189 * 3 2 1 5 5 O 1.20823 * 119.99733 * 359.97438 * 4 3 2 6 6 O 1.34223 * 120.00079 * 180.02562 * 4 3 2 7 7 N 1.46505 * 109.47329 * 240.00383 * 2 1 3 8 8 C 1.34776 * 119.99807 * 65.08003 * 7 2 1 9 9 O 1.21584 * 120.00188 * 354.74151 * 8 7 2 10 10 N 1.34773 * 119.99558 * 174.75108 * 8 7 2 11 11 C 1.46497 * 120.00220 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47106 * 324.72561 * 11 10 8 13 13 C 1.50699 * 109.47720 * 204.72092 * 11 10 8 14 14 H 1.08006 * 119.99472 * 359.97438 * 13 11 10 15 15 C 1.37877 * 120.00238 * 179.97438 * 13 11 10 16 16 N 1.31509 * 120.00000 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99689 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47062 * 90.00150 * 17 15 13 19 19 H 1.48504 * 109.46822 * 209.99541 * 17 15 13 20 20 H 1.48498 * 109.47429 * 329.99629 * 17 15 13 21 21 C 1.53008 * 109.47301 * 84.71711 * 11 10 8 22 22 F 1.39898 * 109.46886 * 60.00089 * 21 11 10 23 23 F 1.39896 * 109.47055 * 180.02562 * 21 11 10 24 24 F 1.39901 * 109.46882 * 300.00602 * 21 11 10 25 25 C 1.53003 * 109.47121 * 120.00139 * 2 1 3 26 26 C 1.52998 * 117.49933 * 134.74329 * 25 2 1 27 27 C 1.52997 * 117.49784 * 66.08451 * 25 2 1 28 28 H 1.09002 * 109.47018 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47606 * 299.99859 * 1 2 3 30 30 H 1.08998 * 109.47014 * 59.99956 * 1 2 3 31 31 H 1.08996 * 109.47020 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46827 * 300.00114 * 3 2 1 33 33 H 0.96698 * 117.00604 * 179.97438 * 6 4 3 34 34 H 0.96999 * 119.99418 * 245.07970 * 7 2 1 35 35 H 0.97004 * 120.00102 * 359.71379 * 10 8 7 36 36 H 0.96996 * 119.99766 * 180.02562 * 16 15 13 37 37 H 1.08999 * 115.54568 * 280.41414 * 25 2 1 38 38 H 1.08999 * 117.49565 * 0.02562 * 26 25 2 39 39 H 1.08998 * 117.49850 * 145.01804 * 26 25 2 40 40 H 1.09001 * 117.49560 * 214.98169 * 27 25 2 41 41 H 1.08999 * 117.50020 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5376 2.1529 1.2306 5 8 0.8427 1.5657 2.0256 6 8 1.8614 3.4381 1.4428 7 7 2.0184 -0.6905 -1.1962 8 6 1.7794 -0.1734 -2.4176 9 8 1.0781 0.8131 -2.5336 10 7 2.3176 -0.7498 -3.5105 11 6 2.0574 -0.1881 -4.8383 12 1 1.0412 0.2046 -4.8739 13 6 2.2164 -1.2657 -5.8797 14 1 2.4848 -2.2686 -5.5823 15 6 2.0191 -0.9712 -7.2122 16 7 1.6917 0.2500 -7.5742 17 14 2.2169 -2.3068 -8.5030 18 1 0.9136 -2.9860 -8.7162 19 1 2.6726 -1.6986 -9.7788 20 1 3.2216 -3.2976 -8.0403 21 6 3.0507 0.9418 -5.1177 22 9 4.3550 0.4379 -5.0720 23 9 2.8018 1.4785 -6.3854 24 9 2.9030 1.9421 -4.1509 25 6 2.0400 -0.7213 1.2492 26 6 3.1762 -1.7299 1.0683 27 6 1.7568 -2.2204 1.3645 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.5154 3.8513 2.2457 34 1 2.5138 -1.5199 -1.1091 35 1 2.8804 -1.5344 -3.4177 36 1 1.5526 0.4570 -8.5116 37 1 2.0291 -0.1349 2.1680 38 1 3.5606 -1.8792 0.0593 39 1 3.9126 -1.8073 1.8682 40 1 1.5599 -2.6203 2.3592 41 1 1.2068 -2.6927 0.5506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592290269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:14 Heat of formation + Delta-G solvation = -240.043113 kcal Electronic energy + Delta-G solvation = -31808.147953 eV Core-core repulsion = 26888.565193 eV Total energy + Delta-G solvation = -4919.582760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.34870 -47.97804 -47.66910 -42.08318 -40.84936 -39.08568 -37.07141 -36.52741 -35.01237 -34.53109 -32.71310 -29.91587 -29.19873 -26.54846 -25.18243 -23.65832 -23.14983 -22.70843 -22.02452 -20.43382 -20.03224 -19.14175 -18.79711 -18.76315 -18.54655 -17.79320 -17.31055 -16.98886 -16.80158 -16.40749 -16.15993 -15.98545 -15.46329 -15.01960 -14.89534 -14.62703 -14.58202 -14.43559 -14.38466 -14.23230 -13.99619 -13.97613 -13.82296 -13.66215 -13.18916 -12.93169 -12.75168 -12.58899 -12.49337 -12.40676 -12.28613 -12.18421 -11.99110 -11.54733 -11.50731 -11.13376 -11.04664 -10.83002 -10.65044 -10.22782 -9.81024 -8.18460 -6.48526 1.18643 1.47740 1.49452 1.57946 1.63354 2.13847 2.25272 2.39563 2.62250 2.88186 2.98201 3.33216 3.51971 3.63326 3.85215 3.92891 3.96770 4.09069 4.22802 4.25355 4.36498 4.54259 4.66061 4.71738 4.78240 4.86673 4.93714 4.96456 5.11669 5.22310 5.28020 5.34104 5.47951 5.57071 5.58923 5.69169 5.74370 6.14185 6.56625 7.02552 7.18262 7.23205 7.69224 8.74148 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.003724 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.994667 B = 7516.986167 C = 8319.313721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.245 3.755 3 C -0.133 4.133 4 C 0.496 3.504 5 O -0.524 6.524 6 O -0.515 6.515 7 N -0.726 5.726 8 C 0.699 3.301 9 O -0.613 6.613 10 N -0.720 5.720 11 C 0.273 3.727 12 H 0.047 0.953 13 C -0.560 4.560 14 H 0.092 0.908 15 C 0.016 3.984 16 N -0.874 5.874 17 Si 0.981 3.019 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.258 1.258 21 C 0.413 3.587 22 F -0.204 7.204 23 F -0.153 7.153 24 F -0.217 7.217 25 C -0.164 4.164 26 C -0.174 4.174 27 C -0.167 4.167 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.429 0.571 34 H 0.409 0.591 35 H 0.409 0.591 36 H 0.268 0.732 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.376 -3.220 17.075 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.158 3.842 3 C -0.171 4.171 4 C 0.340 3.660 5 O -0.415 6.415 6 O -0.329 6.329 7 N -0.387 5.387 8 C 0.399 3.601 9 O -0.493 6.493 10 N -0.374 5.374 11 C 0.165 3.835 12 H 0.065 0.935 13 C -0.597 4.597 14 H 0.110 0.890 15 C -0.190 4.190 16 N -0.508 5.508 17 Si 0.805 3.195 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.182 1.182 21 C 0.357 3.643 22 F -0.186 7.186 23 F -0.134 7.134 24 F -0.199 7.199 25 C -0.182 4.182 26 C -0.211 4.211 27 C -0.204 4.204 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.291 0.709 34 H 0.249 0.751 35 H 0.245 0.755 36 H 0.077 0.923 37 H 0.142 0.858 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.691 -2.510 16.666 17.068 hybrid contribution 0.339 -0.211 -0.484 0.628 sum 3.030 -2.721 16.182 16.686 Atomic orbital electron populations 1.22346 0.94448 1.02623 1.02753 1.19134 0.93691 0.88687 0.82682 1.21788 1.03891 0.96065 0.95393 1.23011 0.76385 0.80060 0.86554 1.90625 1.36560 1.67025 1.47254 1.84528 1.72042 1.26403 1.49910 1.45298 1.61746 1.28735 1.02885 1.16210 0.80091 0.82694 0.81130 1.90840 1.43583 1.28989 1.85862 1.45031 1.54226 1.33554 1.04608 1.19139 0.92533 0.90646 0.81230 0.93493 1.21218 1.51833 0.96076 0.90539 0.89048 1.25961 0.93888 0.98077 1.01041 1.70532 1.42578 1.19535 1.18186 0.85193 0.78849 0.78299 0.77186 1.19696 1.21163 1.18222 1.23322 0.81936 0.84631 0.74433 1.92982 1.41581 1.87661 1.96369 1.93370 1.93388 1.87583 1.39060 1.93062 1.95737 1.65753 1.65301 1.22566 1.04913 0.92958 0.97779 1.23159 0.92026 1.02291 1.03659 1.23033 0.98713 0.94736 1.03907 0.92045 0.89810 0.93620 0.86736 0.87614 0.70949 0.75082 0.75549 0.92258 0.85786 0.88238 0.86809 0.87288 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.74 8.07 71.98 0.58 -4.16 16 2 C 0.24 6.27 0.60 3.61 0.00 6.27 16 3 C -0.13 -3.59 4.73 29.85 0.14 -3.45 16 4 C 0.50 11.85 7.63 71.24 0.54 12.39 16 5 O -0.52 -13.41 12.38 21.97 0.27 -13.13 16 6 O -0.51 -9.90 13.42 -51.35 -0.69 -10.58 16 7 N -0.73 -19.63 4.81 -437.99 -2.11 -21.73 16 8 C 0.70 26.07 7.50 179.06 1.34 27.41 16 9 O -0.61 -27.60 11.13 -3.98 -0.04 -27.64 16 10 N -0.72 -27.90 4.99 -461.41 -2.30 -30.20 16 11 C 0.27 13.32 2.21 44.25 0.10 13.42 16 12 H 0.05 2.67 7.59 -2.39 -0.02 2.65 16 13 C -0.56 -27.63 8.46 25.60 0.22 -27.41 16 14 H 0.09 4.14 7.74 -2.91 -0.02 4.11 16 15 C 0.02 0.80 5.20 84.66 0.44 1.24 16 16 N -0.87 -48.00 9.51 21.45 0.20 -47.79 16 17 Si 0.98 39.99 29.54 68.60 2.03 42.01 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 21 C 0.41 20.96 2.81 71.98 0.20 21.16 16 22 F -0.20 -9.76 16.94 44.97 0.76 -9.00 16 23 F -0.15 -8.53 12.92 44.97 0.58 -7.95 16 24 F -0.22 -10.87 15.64 44.97 0.70 -10.17 16 25 C -0.16 -3.23 4.49 -10.79 -0.05 -3.28 16 26 C -0.17 -2.62 9.72 30.62 0.30 -2.32 16 27 C -0.17 -2.71 9.53 30.62 0.29 -2.42 16 28 H 0.06 1.64 7.72 -2.39 -0.02 1.63 16 29 H 0.08 2.39 5.52 -2.39 -0.01 2.38 16 30 H 0.04 1.61 6.37 -2.39 -0.02 1.60 16 31 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.11 3.65 5.99 -2.39 -0.01 3.63 16 33 H 0.43 3.88 9.10 -74.06 -0.67 3.21 16 34 H 0.41 8.64 5.66 -92.71 -0.52 8.12 16 35 H 0.41 13.14 8.56 -92.70 -0.79 12.35 16 36 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 37 H 0.12 2.59 6.01 -2.39 -0.01 2.57 16 38 H 0.10 1.44 5.96 -2.39 -0.01 1.43 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.60 8.00 -2.39 -0.02 1.58 16 Total: -1.00 -66.25 340.50 2.66 -63.58 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -0.85 Total: 33.74 kcal Atomic # 6 Polarization: 34.75 SS G_CDS: 4.11 Total: 38.86 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.21 Total: -99.73 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.46 Total: -51.36 kcal Atomic # 9 Polarization: -29.16 SS G_CDS: 2.05 Total: -27.11 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Total: -66.25 2.66 -63.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592290269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.458 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds