Wall clock time and date at job start Tue Mar 31 2020 20:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.52330 * 2 1 4 4 O 1.20829 * 119.99780 * 240.08293 * 3 2 1 5 5 O 1.34224 * 119.99864 * 60.08438 * 3 2 1 6 6 C 1.53073 * 109.38920 * 239.83353 * 2 1 3 7 7 C 1.53040 * 109.65933 * 301.27556 * 6 2 1 8 8 C 1.53186 * 109.31251 * 298.69931 * 7 6 2 9 9 N 1.46927 * 108.77752 * 54.63458 * 8 7 6 10 10 C 1.34781 * 120.63385 * 126.40874 * 9 8 7 11 11 O 1.21584 * 119.99653 * 174.90170 * 10 9 8 12 12 N 1.34770 * 119.99709 * 354.90997 * 10 9 8 13 13 C 1.46497 * 119.99944 * 185.24258 * 12 10 9 14 14 H 1.09004 * 109.47033 * 324.99385 * 13 12 10 15 15 C 1.50706 * 109.47330 * 205.00053 * 13 12 10 16 16 H 1.07998 * 119.99631 * 274.87888 * 15 13 12 17 17 C 1.37876 * 120.00115 * 94.87980 * 15 13 12 18 18 N 1.31514 * 119.99596 * 184.82580 * 17 15 13 19 19 Si 1.86799 * 120.00287 * 4.82087 * 17 15 13 20 20 H 1.48495 * 109.47082 * 94.79738 * 19 17 15 21 21 H 1.48494 * 109.47313 * 214.80061 * 19 17 15 22 22 H 1.48508 * 109.46927 * 334.79852 * 19 17 15 23 23 C 1.53003 * 109.47489 * 84.99440 * 13 12 10 24 24 F 1.39900 * 109.46661 * 54.98295 * 23 13 12 25 25 F 1.39899 * 109.47062 * 174.98103 * 23 13 12 26 26 F 1.39898 * 109.46924 * 294.98572 * 23 13 12 27 27 C 1.46934 * 118.73787 * 306.39299 * 9 8 7 28 28 H 1.09004 * 109.47110 * 299.91507 * 1 2 3 29 29 H 1.09000 * 109.47897 * 59.91844 * 1 2 3 30 30 H 1.09003 * 109.47346 * 179.97438 * 1 2 3 31 31 H 0.96700 * 117.00048 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.35152 * 181.24993 * 6 2 1 33 33 H 1.09004 * 109.44152 * 61.35777 * 6 2 1 34 34 H 1.08996 * 109.50257 * 178.74461 * 7 6 2 35 35 H 1.09003 * 109.52238 * 58.67055 * 7 6 2 36 36 H 1.08993 * 109.58767 * 294.84837 * 8 7 6 37 37 H 1.09004 * 109.58911 * 174.42027 * 8 7 6 38 38 H 0.97000 * 120.00348 * 5.23891 * 12 10 9 39 39 H 0.97002 * 119.99576 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.58774 * 173.39318 * 27 9 8 41 41 H 1.08999 * 109.58372 * 293.67591 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7274 1.8154 -0.9070 5 8 1.7115 2.2467 1.0076 6 6 2.0381 -0.7256 -1.2484 7 6 1.5033 -2.1594 -1.2640 8 6 2.0171 -2.9053 -0.0287 9 7 1.6544 -2.1391 1.1713 10 6 0.9798 -2.7233 2.1814 11 8 0.7665 -2.1062 3.2070 12 7 0.5420 -3.9916 2.0544 13 6 -0.2890 -4.5880 3.1032 14 1 0.0297 -4.2138 4.0761 15 6 -0.1417 -6.0875 3.0690 16 1 -0.7515 -6.6747 2.3985 17 6 0.7715 -6.7094 3.8937 18 7 0.9681 -8.0062 3.7972 19 14 1.7297 -5.7103 5.1479 20 1 1.0350 -5.7648 6.4592 21 1 3.0970 -6.2722 5.2882 22 1 1.8186 -4.2993 4.6931 23 6 -1.7538 -4.2139 2.8678 24 9 -2.1298 -4.5929 1.5747 25 9 -2.5598 -4.8755 3.8006 26 9 -1.9111 -2.8314 3.0129 27 6 2.0413 -0.7238 1.2495 28 1 -0.3633 0.5125 0.8908 29 1 -0.3635 0.5151 -0.8892 30 1 -0.3634 -1.0277 -0.0005 31 1 2.0576 3.1485 0.9635 32 1 3.1279 -0.7447 -1.2365 33 1 1.6938 -0.1998 -2.1390 34 1 1.8483 -2.6667 -2.1649 35 1 0.4135 -2.1418 -1.2513 36 1 3.1012 -3.0034 -0.0857 37 1 1.5606 -3.8941 0.0174 38 1 0.7770 -4.5095 1.2687 39 1 1.6108 -8.4438 4.3772 40 1 1.6008 -0.2731 2.1388 41 1 3.1273 -0.6441 1.2993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604493110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:13 Heat of formation + Delta-G solvation = -275.202646 kcal Electronic energy + Delta-G solvation = -32053.148422 eV Core-core repulsion = 27132.041030 eV Total energy + Delta-G solvation = -4921.107392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.04990 -46.57476 -46.53133 -41.12583 -39.77863 -37.68304 -36.30977 -34.84822 -33.74084 -32.47028 -31.81537 -29.15059 -27.15871 -25.41795 -24.96377 -24.51352 -22.35069 -21.39790 -19.96026 -19.04243 -18.42569 -18.11303 -17.56660 -17.52073 -16.92854 -16.54190 -16.33444 -16.06750 -15.61766 -14.93843 -14.76903 -14.59528 -14.07511 -13.85321 -13.62077 -13.49249 -13.44411 -13.28291 -13.02532 -12.95678 -12.87291 -12.74752 -12.69071 -12.57193 -12.36048 -11.91191 -11.83035 -11.74758 -11.43747 -11.19269 -11.14717 -11.07484 -10.71944 -10.68569 -10.53840 -10.06669 -9.81246 -9.61125 -8.99935 -8.62590 -8.22848 -6.55375 -4.70795 1.94798 2.68499 3.00587 3.14547 3.21555 3.33747 3.56583 3.95099 4.10465 4.19600 4.32690 4.55141 4.61231 4.83233 4.87364 4.94488 5.09869 5.19842 5.23277 5.28150 5.37453 5.45011 5.56031 5.60308 5.65790 5.72062 5.72899 5.77212 5.94687 6.00263 6.22690 6.27112 6.29127 6.61695 6.88593 7.17368 7.32024 7.67649 7.88374 8.49887 8.53309 9.00946 9.10502 10.52615 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.004190 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.048017 B = 6681.137970 C = 7091.478977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C 0.494 3.506 4 O -0.516 6.516 5 O -0.509 6.509 6 C -0.097 4.097 7 C -0.136 4.136 8 C 0.107 3.893 9 N -0.632 5.632 10 C 0.698 3.302 11 O -0.586 6.586 12 N -0.727 5.727 13 C 0.215 3.785 14 H 0.094 0.906 15 C -0.535 4.535 16 H 0.093 0.907 17 C 0.101 3.899 18 N -0.859 5.859 19 Si 0.862 3.138 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.245 1.245 23 C 0.436 3.564 24 F -0.194 7.194 25 F -0.182 7.182 26 F -0.196 7.196 27 C 0.146 3.854 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.408 0.592 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.395 0.605 39 H 0.275 0.725 40 H 0.107 0.893 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 13.300 -8.827 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C 0.336 3.664 4 O -0.404 6.404 5 O -0.320 6.320 6 C -0.135 4.135 7 C -0.174 4.174 8 C -0.017 4.017 9 N -0.371 5.371 10 C 0.400 3.600 11 O -0.464 6.464 12 N -0.384 5.384 13 C 0.111 3.889 14 H 0.112 0.888 15 C -0.573 4.573 16 H 0.111 0.889 17 C -0.109 4.109 18 N -0.491 5.491 19 Si 0.687 3.313 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.168 1.168 23 C 0.380 3.620 24 F -0.175 7.175 25 F -0.164 7.164 26 F -0.178 7.178 27 C 0.021 3.979 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.234 0.766 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.305 13.254 -8.211 15.761 hybrid contribution 0.681 0.827 0.065 1.073 sum 2.986 14.080 -8.146 16.539 Atomic orbital electron populations 1.21859 0.90849 1.04175 1.02665 1.20957 0.98936 0.87529 0.99485 1.23307 0.76342 0.88295 0.78478 1.90704 1.35953 1.77215 1.36494 1.84594 1.72018 1.27388 1.47967 1.21450 1.01339 0.95227 0.95440 1.22011 1.02125 0.95005 0.98292 1.21684 1.00372 0.95396 0.84221 1.47252 1.60925 1.10266 1.18626 1.16300 0.78120 0.82540 0.83016 1.90877 1.63101 1.64405 1.28036 1.46926 1.54197 1.11490 1.25770 1.20006 0.81256 0.96399 0.91192 0.88820 1.20743 1.24395 0.86438 1.25706 0.88929 1.24992 0.95051 0.94869 0.95998 1.69866 1.32955 1.09222 1.37096 0.86978 0.79812 0.82249 0.82249 1.19220 1.20539 1.16802 1.21813 0.93585 0.73280 0.73312 1.93059 1.93294 1.91224 1.39963 1.93105 1.76125 1.81047 1.66098 1.93136 1.96794 1.32387 1.95471 1.21250 0.99108 0.80844 0.96655 0.91039 0.92299 0.90227 0.73313 0.90842 0.90777 0.89961 0.90575 0.91257 0.89387 0.76638 0.91470 0.87513 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 7.92 37.15 0.29 -1.28 16 2 C -0.07 -0.75 0.71 -155.52 -0.11 -0.86 16 3 C 0.49 5.54 6.93 36.01 0.25 5.79 16 4 O -0.52 -6.84 16.75 -18.75 -0.31 -7.16 16 5 O -0.51 -4.70 13.26 -39.24 -0.52 -5.22 16 6 C -0.10 -0.96 4.00 -26.67 -0.11 -1.07 16 7 C -0.14 -1.27 5.74 -26.61 -0.15 -1.43 16 8 C 0.11 1.22 6.43 -3.71 -0.02 1.19 16 9 N -0.63 -9.33 2.42 -178.50 -0.43 -9.76 16 10 C 0.70 13.47 7.87 -86.92 -0.68 12.78 16 11 O -0.59 -13.32 14.60 5.29 0.08 -13.25 16 12 N -0.73 -14.35 4.82 -59.81 -0.29 -14.63 16 13 C 0.22 4.89 1.70 -69.08 -0.12 4.77 16 14 H 0.09 2.29 4.44 -51.93 -0.23 2.06 16 15 C -0.54 -13.38 8.52 -34.44 -0.29 -13.67 16 16 H 0.09 2.50 8.00 -52.49 -0.42 2.08 16 17 C 0.10 2.60 5.47 -17.82 -0.10 2.50 16 18 N -0.86 -23.21 13.96 55.43 0.77 -22.44 16 19 Si 0.86 19.89 27.31 -169.99 -4.64 15.25 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.24 -5.80 6.37 56.52 0.36 -5.44 16 23 C 0.44 9.57 2.83 37.16 0.11 9.67 16 24 F -0.19 -4.05 16.93 2.25 0.04 -4.01 16 25 F -0.18 -4.10 16.89 2.25 0.04 -4.06 16 26 F -0.20 -4.27 16.05 2.25 0.04 -4.23 16 27 C 0.15 1.92 5.02 -3.71 -0.02 1.91 16 28 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.00 5.98 -51.93 -0.31 0.69 16 31 H 0.41 1.91 9.10 45.56 0.41 2.32 16 32 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.76 6.35 -51.93 -0.33 0.43 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.02 5.57 -51.93 -0.29 0.73 16 38 H 0.40 6.98 6.05 -40.82 -0.25 6.73 16 39 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.11 1.62 7.04 -51.93 -0.37 1.25 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -31.28 344.44 -4.91 -36.19 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.91 Total: 7.82 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: -0.96 Total: 20.32 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.05 Total: -46.83 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.76 Total: -25.63 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 0.11 Total: -12.31 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.64 Total: 15.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.28 -4.91 -36.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604493110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.015 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds