Wall clock time and date at job start Tue Mar 31 2020 20:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.52330 * 2 1 4 4 O 1.20829 * 119.99780 * 240.08293 * 3 2 1 5 5 O 1.34224 * 119.99864 * 60.08438 * 3 2 1 6 6 C 1.53073 * 109.38920 * 239.83353 * 2 1 3 7 7 C 1.53040 * 109.65933 * 301.27556 * 6 2 1 8 8 C 1.53186 * 109.31251 * 298.69931 * 7 6 2 9 9 N 1.46927 * 108.77752 * 54.63458 * 8 7 6 10 10 C 1.34781 * 120.63385 * 126.40874 * 9 8 7 11 11 O 1.21584 * 119.99653 * 174.90170 * 10 9 8 12 12 N 1.34770 * 119.99709 * 354.90997 * 10 9 8 13 13 C 1.46497 * 119.99944 * 185.24258 * 12 10 9 14 14 H 1.09004 * 109.47033 * 324.99385 * 13 12 10 15 15 C 1.50706 * 109.47330 * 205.00053 * 13 12 10 16 16 H 1.07998 * 119.99631 * 274.87888 * 15 13 12 17 17 C 1.37876 * 120.00115 * 94.87980 * 15 13 12 18 18 N 1.31514 * 119.99596 * 184.82580 * 17 15 13 19 19 Si 1.86799 * 120.00287 * 4.82087 * 17 15 13 20 20 H 1.48495 * 109.47082 * 94.79738 * 19 17 15 21 21 H 1.48494 * 109.47313 * 214.80061 * 19 17 15 22 22 H 1.48508 * 109.46927 * 334.79852 * 19 17 15 23 23 C 1.53003 * 109.47489 * 84.99440 * 13 12 10 24 24 F 1.39900 * 109.46661 * 54.98295 * 23 13 12 25 25 F 1.39899 * 109.47062 * 174.98103 * 23 13 12 26 26 F 1.39898 * 109.46924 * 294.98572 * 23 13 12 27 27 C 1.46934 * 118.73787 * 306.39299 * 9 8 7 28 28 H 1.09004 * 109.47110 * 299.91507 * 1 2 3 29 29 H 1.09000 * 109.47897 * 59.91844 * 1 2 3 30 30 H 1.09003 * 109.47346 * 179.97438 * 1 2 3 31 31 H 0.96700 * 117.00048 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.35152 * 181.24993 * 6 2 1 33 33 H 1.09004 * 109.44152 * 61.35777 * 6 2 1 34 34 H 1.08996 * 109.50257 * 178.74461 * 7 6 2 35 35 H 1.09003 * 109.52238 * 58.67055 * 7 6 2 36 36 H 1.08993 * 109.58767 * 294.84837 * 8 7 6 37 37 H 1.09004 * 109.58911 * 174.42027 * 8 7 6 38 38 H 0.97000 * 120.00348 * 5.23891 * 12 10 9 39 39 H 0.97002 * 119.99576 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.58774 * 173.39318 * 27 9 8 41 41 H 1.08999 * 109.58372 * 293.67591 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7274 1.8154 -0.9070 5 8 1.7115 2.2467 1.0076 6 6 2.0381 -0.7256 -1.2484 7 6 1.5033 -2.1594 -1.2640 8 6 2.0171 -2.9053 -0.0287 9 7 1.6544 -2.1391 1.1713 10 6 0.9798 -2.7233 2.1814 11 8 0.7665 -2.1062 3.2070 12 7 0.5420 -3.9916 2.0544 13 6 -0.2890 -4.5880 3.1032 14 1 0.0297 -4.2138 4.0761 15 6 -0.1417 -6.0875 3.0690 16 1 -0.7515 -6.6747 2.3985 17 6 0.7715 -6.7094 3.8937 18 7 0.9681 -8.0062 3.7972 19 14 1.7297 -5.7103 5.1479 20 1 1.0350 -5.7648 6.4592 21 1 3.0970 -6.2722 5.2882 22 1 1.8186 -4.2993 4.6931 23 6 -1.7538 -4.2139 2.8678 24 9 -2.1298 -4.5929 1.5747 25 9 -2.5598 -4.8755 3.8006 26 9 -1.9111 -2.8314 3.0129 27 6 2.0413 -0.7238 1.2495 28 1 -0.3633 0.5125 0.8908 29 1 -0.3635 0.5151 -0.8892 30 1 -0.3634 -1.0277 -0.0005 31 1 2.0576 3.1485 0.9635 32 1 3.1279 -0.7447 -1.2365 33 1 1.6938 -0.1998 -2.1390 34 1 1.8483 -2.6667 -2.1649 35 1 0.4135 -2.1418 -1.2513 36 1 3.1012 -3.0034 -0.0857 37 1 1.5606 -3.8941 0.0174 38 1 0.7770 -4.5095 1.2687 39 1 1.6108 -8.4438 4.3772 40 1 1.6008 -0.2731 2.1388 41 1 3.1273 -0.6441 1.2993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604493110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:13 Heat of formation + Delta-G solvation = -296.192977 kcal Electronic energy + Delta-G solvation = -32054.058631 eV Core-core repulsion = 27132.041030 eV Total energy + Delta-G solvation = -4922.017601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.83461 -48.34336 -48.32539 -42.11756 -41.01859 -38.85212 -37.16928 -36.58415 -35.01193 -34.23808 -32.77113 -30.84404 -28.14133 -26.86619 -26.47357 -25.51482 -23.36047 -23.02126 -21.34762 -20.44154 -19.65806 -19.28251 -19.07372 -18.98185 -18.51019 -18.40056 -17.51442 -17.34615 -16.76377 -16.24161 -16.15083 -15.72125 -15.40656 -15.24764 -15.06600 -14.99785 -14.79768 -14.77068 -14.67674 -14.53072 -14.48033 -14.45591 -14.12928 -13.82539 -13.61809 -13.28222 -13.03122 -12.83730 -12.60414 -12.54183 -12.34607 -12.06039 -11.99669 -11.92669 -11.77401 -11.57185 -11.50065 -11.14069 -10.96365 -10.19409 -9.54099 -8.54087 -6.72117 1.04025 1.25635 1.34545 1.47288 1.55619 1.94906 2.05962 2.19012 2.28915 2.70938 3.04856 3.36618 3.39634 3.43153 3.61670 3.68510 3.76470 3.97978 4.06888 4.27849 4.38555 4.46117 4.51486 4.61486 4.65996 4.73316 4.80003 4.88041 4.97193 5.01804 5.08697 5.13852 5.40116 5.50928 5.53793 5.54993 5.82121 6.02546 6.45619 6.94830 7.01552 7.04663 7.59150 8.57931 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.004190 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.048017 B = 6681.137970 C = 7091.478977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C 0.502 3.498 4 O -0.536 6.536 5 O -0.510 6.510 6 C -0.093 4.093 7 C -0.128 4.128 8 C 0.098 3.902 9 N -0.624 5.624 10 C 0.696 3.304 11 O -0.624 6.624 12 N -0.724 5.724 13 C 0.224 3.776 14 H 0.080 0.920 15 C -0.534 4.534 16 H 0.068 0.932 17 C 0.067 3.933 18 N -0.896 5.896 19 Si 0.915 3.085 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.255 1.255 23 C 0.438 3.562 24 F -0.187 7.187 25 F -0.186 7.186 26 F -0.193 7.193 27 C 0.145 3.855 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.428 0.572 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.407 0.593 39 H 0.280 0.720 40 H 0.084 0.916 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 14.544 -10.090 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 C 0.344 3.656 4 O -0.425 6.425 5 O -0.323 6.323 6 C -0.130 4.130 7 C -0.165 4.165 8 C -0.024 4.024 9 N -0.361 5.361 10 C 0.398 3.602 11 O -0.505 6.505 12 N -0.382 5.382 13 C 0.118 3.882 14 H 0.097 0.903 15 C -0.571 4.571 16 H 0.086 0.914 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.738 3.262 20 H -0.190 1.190 21 H -0.196 1.196 22 H -0.179 1.179 23 C 0.382 3.618 24 F -0.168 7.168 25 F -0.168 7.168 26 F -0.175 7.175 27 C 0.021 3.979 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.290 0.710 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.247 0.753 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.251 14.523 -9.518 17.666 hybrid contribution 0.362 0.541 0.404 0.766 sum 3.613 15.064 -9.113 17.973 Atomic orbital electron populations 1.21803 0.91074 1.03373 1.02884 1.20915 0.98700 0.87800 0.99128 1.23152 0.75779 0.88323 0.78348 1.90703 1.36884 1.77631 1.37309 1.84558 1.71831 1.28780 1.47131 1.21448 1.01550 0.95230 0.94795 1.21977 1.01739 0.94679 0.98150 1.21999 1.01703 0.95122 0.83547 1.47226 1.59388 1.11045 1.18431 1.16307 0.78369 0.82026 0.83469 1.90850 1.64636 1.65080 1.29893 1.46385 1.54190 1.12164 1.25481 1.19685 0.81990 0.95082 0.91434 0.90283 1.20667 1.23886 0.87421 1.25169 0.91390 1.25487 0.95841 0.95394 0.97223 1.69925 1.34291 1.10380 1.38447 0.86182 0.79171 0.80319 0.80491 1.19021 1.19650 1.17942 1.21670 0.93194 0.73359 0.73543 1.93069 1.93186 1.91171 1.39392 1.93096 1.76207 1.81159 1.66319 1.93142 1.96747 1.32133 1.95486 1.21317 0.99801 0.79828 0.96929 0.92340 0.90576 0.91483 0.70954 0.90424 0.90005 0.87211 0.91139 0.89288 0.89653 0.75349 0.91034 0.89717 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 7.92 71.98 0.57 -2.28 16 2 C -0.06 -1.29 0.71 -52.84 -0.04 -1.33 16 3 C 0.50 10.22 6.93 71.24 0.49 10.72 16 4 O -0.54 -13.00 16.75 21.96 0.37 -12.63 16 5 O -0.51 -8.50 13.26 -51.36 -0.68 -9.18 16 6 C -0.09 -1.56 4.00 30.63 0.12 -1.44 16 7 C -0.13 -2.00 5.74 30.67 0.18 -1.82 16 8 C 0.10 2.00 6.43 86.36 0.56 2.56 16 9 N -0.62 -17.52 2.42 -836.91 -2.03 -19.54 16 10 C 0.70 26.40 7.87 179.06 1.41 27.81 16 11 O -0.62 -28.31 14.60 -3.98 -0.06 -28.37 16 12 N -0.72 -28.18 4.82 -461.41 -2.22 -30.40 16 13 C 0.22 10.14 1.70 44.25 0.08 10.22 16 14 H 0.08 3.87 4.44 -2.39 -0.01 3.86 16 15 C -0.53 -26.84 8.52 25.60 0.22 -26.62 16 16 H 0.07 3.73 8.00 -2.91 -0.02 3.70 16 17 C 0.07 3.47 5.47 84.65 0.46 3.93 16 18 N -0.90 -48.66 13.96 21.45 0.30 -48.36 16 19 Si 0.91 41.13 27.31 68.60 1.87 43.00 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.26 -11.88 6.37 99.48 0.63 -11.25 16 23 C 0.44 19.12 2.83 71.98 0.20 19.32 16 24 F -0.19 -7.69 16.93 44.97 0.76 -6.93 16 25 F -0.19 -8.35 16.89 44.97 0.76 -7.59 16 26 F -0.19 -8.34 16.05 44.97 0.72 -7.62 16 27 C 0.15 3.62 5.02 86.36 0.43 4.06 16 28 H 0.06 1.39 8.12 -2.38 -0.02 1.37 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.60 5.98 -2.39 -0.01 1.59 16 31 H 0.43 3.11 9.10 -74.06 -0.67 2.44 16 32 H 0.08 1.29 8.13 -2.39 -0.02 1.27 16 33 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.23 6.35 -2.39 -0.02 1.21 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.80 5.57 -2.38 -0.01 1.79 16 38 H 0.41 14.00 6.05 -92.71 -0.56 13.44 16 39 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.08 2.53 7.04 -2.39 -0.02 2.51 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -66.59 344.44 4.29 -62.30 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.19 Total: 20.22 kcal Atomic # 6 Polarization: 40.43 SS G_CDS: 4.68 Total: 45.11 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -3.95 Total: -98.31 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.37 Total: -50.18 kcal Atomic # 9 Polarization: -24.39 SS G_CDS: 2.24 Total: -22.14 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.87 Total: 43.00 kcal Total: -66.59 4.29 -62.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604493110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.888 kcal (2) G-P(sol) polarization free energy of solvation -66.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -300.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -296.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds