Wall clock time and date at job start Tue Mar 31 2020 20:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.52249 * 2 1 4 4 O 1.20832 * 119.99916 * 240.07924 * 3 2 1 5 5 O 1.34224 * 120.00258 * 60.07665 * 3 2 1 6 6 C 1.53040 * 109.49901 * 239.91900 * 2 1 3 7 7 C 1.53034 * 109.53952 * 301.41027 * 6 2 1 8 8 C 1.53625 * 109.24544 * 298.51504 * 7 6 2 9 9 N 1.46927 * 108.54170 * 54.84985 * 8 7 6 10 10 C 1.34778 * 120.62895 * 126.37665 * 9 8 7 11 11 O 1.21588 * 120.00189 * 184.93974 * 10 9 8 12 12 N 1.34776 * 119.99978 * 4.93407 * 10 9 8 13 13 C 1.46498 * 120.00102 * 174.96190 * 12 10 9 14 14 H 1.09000 * 109.47166 * 35.00434 * 13 12 10 15 15 C 1.50700 * 109.47159 * 155.00300 * 13 12 10 16 16 H 1.08003 * 120.00091 * 359.97438 * 15 13 12 17 17 C 1.37879 * 120.00237 * 180.02562 * 15 13 12 18 18 N 1.31512 * 119.99617 * 0.02562 * 17 15 13 19 19 Si 1.86792 * 120.00344 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47114 * 60.00044 * 19 17 15 21 21 H 1.48501 * 109.47563 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47382 * 300.00158 * 19 17 15 23 23 C 1.52994 * 109.47210 * 275.00038 * 13 12 10 24 24 F 1.39909 * 109.47001 * 60.00291 * 23 13 12 25 25 F 1.39894 * 109.47489 * 299.99906 * 23 13 12 26 26 F 1.39900 * 109.47049 * 179.97438 * 23 13 12 27 27 C 1.46925 * 118.74236 * 306.09735 * 9 8 7 28 28 H 1.08995 * 109.47579 * 299.91646 * 1 2 3 29 29 H 1.09004 * 109.47164 * 59.92270 * 1 2 3 30 30 H 1.09001 * 109.46733 * 179.91886 * 1 2 3 31 31 H 0.96701 * 117.00072 * 179.97438 * 5 3 2 32 32 H 1.08998 * 109.46129 * 61.43430 * 6 2 1 33 33 H 1.09007 * 109.45684 * 181.40499 * 6 2 1 34 34 H 1.09004 * 109.49708 * 58.58754 * 7 6 2 35 35 H 1.08997 * 109.50127 * 178.64928 * 7 6 2 36 36 H 1.09006 * 109.73476 * 295.11807 * 8 7 6 37 37 H 1.08992 * 109.66961 * 174.54947 * 8 7 6 38 38 H 0.97007 * 120.00251 * 354.96619 * 12 10 9 39 39 H 0.97006 * 120.00174 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.59067 * 173.64783 * 27 9 8 41 41 H 1.09003 * 109.58899 * 293.93334 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7274 1.8154 -0.9070 5 8 1.7114 2.2468 1.0074 6 6 2.0408 -0.7231 -1.2483 7 6 1.5031 -2.1557 -1.2660 8 6 2.0190 -2.9055 -0.0283 9 7 1.6516 -2.1381 1.1696 10 6 0.9749 -2.7220 2.1784 11 8 0.5982 -2.0561 3.1234 12 7 0.7156 -4.0440 2.1395 13 6 0.0784 -4.6994 3.2843 14 1 -0.6346 -4.0151 3.7442 15 6 -0.6432 -5.9372 2.8169 16 1 -0.6289 -6.2082 1.7715 17 6 -1.3224 -6.7230 3.7236 18 7 -1.3410 -6.3921 4.9963 19 14 -2.2174 -8.2568 3.1442 20 1 -1.2465 -9.1895 2.5177 21 1 -2.8632 -8.9213 4.3046 22 1 -3.2536 -7.8793 2.1495 23 6 1.1462 -5.0880 4.3088 24 9 1.8160 -3.9389 4.7428 25 9 2.0611 -5.9663 3.7186 26 9 0.5376 -5.7133 5.4023 27 6 2.0413 -0.7237 1.2496 28 1 -0.3634 0.5125 0.8907 29 1 -0.3634 0.5150 -0.8893 30 1 -0.3633 -1.0277 -0.0015 31 1 2.0582 3.1484 0.9637 32 1 1.6988 -0.1958 -2.1389 33 1 3.1306 -0.7445 -1.2351 34 1 0.4133 -2.1355 -1.2541 35 1 1.8477 -2.6626 -2.1673 36 1 3.1034 -3.0022 -0.0819 37 1 1.5637 -3.8947 0.0176 38 1 0.9509 -4.5616 1.3535 39 1 -1.8192 -6.9447 5.6342 40 1 1.6007 -0.2730 2.1389 41 1 3.1274 -0.6462 1.3006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604493111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:18 Heat of formation + Delta-G solvation = -252.062727 kcal Electronic energy + Delta-G solvation = -31788.415463 eV Core-core repulsion = 26868.311494 eV Total energy + Delta-G solvation = -4920.103970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.33713 -45.99290 -45.60305 -41.11777 -39.75646 -37.63727 -36.29182 -34.73449 -33.73418 -32.41490 -31.79925 -28.53293 -27.11965 -25.40673 -24.67039 -24.38790 -22.36281 -21.48678 -19.88981 -18.98893 -18.27332 -18.10198 -17.00920 -16.91065 -16.63731 -16.48538 -16.09775 -15.75236 -15.26198 -14.90854 -14.78416 -14.71563 -14.05848 -13.75214 -13.63055 -13.30116 -13.16111 -12.91382 -12.85166 -12.50612 -12.39789 -12.36890 -12.27043 -12.00117 -11.87438 -11.79749 -11.74608 -11.44544 -11.21583 -11.16382 -11.09210 -10.87864 -10.78863 -10.70108 -10.52593 -10.39175 -9.67566 -9.53417 -8.73635 -8.56517 -8.15035 -6.24120 -4.48194 1.96214 2.70797 3.05814 3.19005 3.24406 3.26058 3.66648 4.15534 4.26464 4.37901 4.55349 4.59508 4.66060 4.80952 4.92445 4.93280 5.10322 5.26084 5.40466 5.54798 5.59228 5.63408 5.69514 5.73272 5.75529 5.83800 5.88737 5.94766 5.98946 6.21262 6.23561 6.28711 6.58788 6.84243 7.17115 7.32341 7.57456 7.63674 7.69147 8.46783 8.55990 9.10191 9.21997 10.67510 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.003504 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.565423 B = 7989.552212 C = 8502.872370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C 0.494 3.506 4 O -0.517 6.517 5 O -0.508 6.508 6 C -0.098 4.098 7 C -0.136 4.136 8 C 0.108 3.892 9 N -0.632 5.632 10 C 0.705 3.295 11 O -0.579 6.579 12 N -0.725 5.725 13 C 0.261 3.739 14 H 0.087 0.913 15 C -0.552 4.552 16 H 0.076 0.924 17 C 0.066 3.934 18 N -0.839 5.839 19 Si 0.915 3.085 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.416 3.584 24 F -0.218 7.218 25 F -0.210 7.210 26 F -0.137 7.137 27 C 0.146 3.854 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.408 0.592 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.394 0.606 39 H 0.269 0.731 40 H 0.108 0.892 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.265 9.638 -11.179 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C 0.335 3.665 4 O -0.404 6.404 5 O -0.319 6.319 6 C -0.135 4.135 7 C -0.174 4.174 8 C -0.016 4.016 9 N -0.370 5.370 10 C 0.407 3.593 11 O -0.455 6.455 12 N -0.380 5.380 13 C 0.155 3.845 14 H 0.104 0.896 15 C -0.589 4.589 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.472 5.472 19 Si 0.741 3.259 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.198 1.198 23 C 0.359 3.641 24 F -0.200 7.200 25 F -0.192 7.192 26 F -0.118 7.118 27 C 0.022 3.978 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.230 0.770 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.950 9.734 -10.419 15.093 hybrid contribution 0.270 -0.499 -0.513 0.765 sum 5.220 9.235 -10.931 15.232 Atomic orbital electron populations 1.21854 0.90801 1.04163 1.02682 1.20955 0.98979 0.87517 0.99418 1.23320 0.76338 0.88317 0.78477 1.90704 1.35992 1.77229 1.36522 1.84597 1.71950 1.27410 1.47958 1.21450 1.01334 0.95214 0.95516 1.22087 1.02094 0.95051 0.98164 1.21759 1.00308 0.95202 0.84328 1.47142 1.60627 1.10437 1.18842 1.15922 0.78529 0.82678 0.82204 1.90910 1.57085 1.62931 1.34602 1.45439 1.65275 1.06426 1.20833 1.19620 0.87804 0.95402 0.81687 0.89551 1.20813 1.34233 1.08192 0.95677 0.90616 1.25066 0.95988 0.98640 0.94626 1.70389 1.37105 1.38258 1.01458 0.86278 0.79631 0.81630 0.78323 1.19856 1.20880 1.19802 1.23201 0.82481 0.73722 0.84680 1.93067 1.83406 1.52171 1.91375 1.92982 1.70294 1.71274 1.84646 1.93402 1.80598 1.81915 1.55910 1.21268 0.99051 0.80669 0.96817 0.90915 0.92375 0.90223 0.73301 0.90767 0.90826 0.90533 0.90059 0.91272 0.89643 0.77018 0.92047 0.87336 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 7.92 37.16 0.29 -1.23 16 2 C -0.07 -0.73 0.71 -155.54 -0.11 -0.84 16 3 C 0.49 5.48 6.93 36.01 0.25 5.73 16 4 O -0.52 -6.79 16.74 -18.75 -0.31 -7.10 16 5 O -0.51 -4.68 13.26 -39.24 -0.52 -5.20 16 6 C -0.10 -0.94 4.00 -26.69 -0.11 -1.04 16 7 C -0.14 -1.20 5.75 -26.39 -0.15 -1.36 16 8 C 0.11 1.17 6.42 -3.48 -0.02 1.15 16 9 N -0.63 -9.17 2.40 -178.23 -0.43 -9.59 16 10 C 0.71 13.71 7.74 -86.92 -0.67 13.04 16 11 O -0.58 -13.47 14.58 5.29 0.08 -13.40 16 12 N -0.73 -14.51 4.89 -59.82 -0.29 -14.80 16 13 C 0.26 6.38 2.22 -69.09 -0.15 6.23 16 14 H 0.09 2.38 7.51 -51.93 -0.39 1.99 16 15 C -0.55 -13.75 8.46 -34.44 -0.29 -14.04 16 16 H 0.08 1.76 7.74 -52.48 -0.41 1.36 16 17 C 0.07 1.68 5.20 -17.82 -0.09 1.59 16 18 N -0.84 -22.70 9.51 55.43 0.53 -22.17 16 19 Si 0.91 19.71 29.54 -169.99 -5.02 14.69 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C 0.42 10.57 2.81 37.15 0.10 10.67 16 24 F -0.22 -5.54 15.88 2.25 0.04 -5.50 16 25 F -0.21 -5.13 16.94 2.25 0.04 -5.09 16 26 F -0.14 -3.77 12.92 2.25 0.03 -3.74 16 27 C 0.15 1.91 5.05 -3.71 -0.02 1.89 16 28 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.96 5.97 -51.93 -0.31 0.65 16 31 H 0.41 1.90 9.10 45.56 0.41 2.32 16 32 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.08 0.72 6.33 -51.93 -0.33 0.39 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.92 5.64 -51.93 -0.29 0.63 16 38 H 0.39 6.77 6.03 -40.82 -0.25 6.52 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.11 1.65 6.99 -51.93 -0.36 1.28 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -32.13 341.70 -5.70 -37.83 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.01 Total: 7.14 kcal Atomic # 6 Polarization: 22.76 SS G_CDS: -0.97 Total: 21.79 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.19 Total: -46.56 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.76 Total: -25.70 kcal Atomic # 9 Polarization: -14.43 SS G_CDS: 0.10 Total: -14.33 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.13 -5.70 -37.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604493111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.233 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds