Wall clock time and date at job start Tue Mar 31 2020 20:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.52249 * 2 1 4 4 O 1.20832 * 119.99916 * 240.07924 * 3 2 1 5 5 O 1.34224 * 120.00258 * 60.07665 * 3 2 1 6 6 C 1.53040 * 109.49901 * 239.91900 * 2 1 3 7 7 C 1.53034 * 109.53952 * 301.41027 * 6 2 1 8 8 C 1.53625 * 109.24544 * 298.51504 * 7 6 2 9 9 N 1.46927 * 108.54170 * 54.84985 * 8 7 6 10 10 C 1.34778 * 120.62895 * 126.37665 * 9 8 7 11 11 O 1.21588 * 120.00189 * 184.93974 * 10 9 8 12 12 N 1.34776 * 119.99978 * 4.93407 * 10 9 8 13 13 C 1.46498 * 120.00102 * 174.96190 * 12 10 9 14 14 H 1.09000 * 109.47166 * 35.00434 * 13 12 10 15 15 C 1.50700 * 109.47159 * 155.00300 * 13 12 10 16 16 H 1.08003 * 120.00091 * 359.97438 * 15 13 12 17 17 C 1.37879 * 120.00237 * 180.02562 * 15 13 12 18 18 N 1.31512 * 119.99617 * 0.02562 * 17 15 13 19 19 Si 1.86792 * 120.00344 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47114 * 60.00044 * 19 17 15 21 21 H 1.48501 * 109.47563 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47382 * 300.00158 * 19 17 15 23 23 C 1.52994 * 109.47210 * 275.00038 * 13 12 10 24 24 F 1.39909 * 109.47001 * 60.00291 * 23 13 12 25 25 F 1.39894 * 109.47489 * 299.99906 * 23 13 12 26 26 F 1.39900 * 109.47049 * 179.97438 * 23 13 12 27 27 C 1.46925 * 118.74236 * 306.09735 * 9 8 7 28 28 H 1.08995 * 109.47579 * 299.91646 * 1 2 3 29 29 H 1.09004 * 109.47164 * 59.92270 * 1 2 3 30 30 H 1.09001 * 109.46733 * 179.91886 * 1 2 3 31 31 H 0.96701 * 117.00072 * 179.97438 * 5 3 2 32 32 H 1.08998 * 109.46129 * 61.43430 * 6 2 1 33 33 H 1.09007 * 109.45684 * 181.40499 * 6 2 1 34 34 H 1.09004 * 109.49708 * 58.58754 * 7 6 2 35 35 H 1.08997 * 109.50127 * 178.64928 * 7 6 2 36 36 H 1.09006 * 109.73476 * 295.11807 * 8 7 6 37 37 H 1.08992 * 109.66961 * 174.54947 * 8 7 6 38 38 H 0.97007 * 120.00251 * 354.96619 * 12 10 9 39 39 H 0.97006 * 120.00174 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.59067 * 173.64783 * 27 9 8 41 41 H 1.09003 * 109.58899 * 293.93334 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7274 1.8154 -0.9070 5 8 1.7114 2.2468 1.0074 6 6 2.0408 -0.7231 -1.2483 7 6 1.5031 -2.1557 -1.2660 8 6 2.0190 -2.9055 -0.0283 9 7 1.6516 -2.1381 1.1696 10 6 0.9749 -2.7220 2.1784 11 8 0.5982 -2.0561 3.1234 12 7 0.7156 -4.0440 2.1395 13 6 0.0784 -4.6994 3.2843 14 1 -0.6346 -4.0151 3.7442 15 6 -0.6432 -5.9372 2.8169 16 1 -0.6289 -6.2082 1.7715 17 6 -1.3224 -6.7230 3.7236 18 7 -1.3410 -6.3921 4.9963 19 14 -2.2174 -8.2568 3.1442 20 1 -1.2465 -9.1895 2.5177 21 1 -2.8632 -8.9213 4.3046 22 1 -3.2536 -7.8793 2.1495 23 6 1.1462 -5.0880 4.3088 24 9 1.8160 -3.9389 4.7428 25 9 2.0611 -5.9663 3.7186 26 9 0.5376 -5.7133 5.4023 27 6 2.0413 -0.7237 1.2496 28 1 -0.3634 0.5125 0.8907 29 1 -0.3634 0.5150 -0.8893 30 1 -0.3633 -1.0277 -0.0015 31 1 2.0582 3.1484 0.9637 32 1 1.6988 -0.1958 -2.1389 33 1 3.1306 -0.7445 -1.2351 34 1 0.4133 -2.1355 -1.2541 35 1 1.8477 -2.6626 -2.1673 36 1 3.1034 -3.0022 -0.0819 37 1 1.5637 -3.8947 0.0176 38 1 0.9509 -4.5616 1.3535 39 1 -1.8192 -6.9447 5.6342 40 1 1.6007 -0.2730 2.1389 41 1 3.1274 -0.6462 1.3006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604493111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:17 Heat of formation + Delta-G solvation = -273.511238 kcal Electronic energy + Delta-G solvation = -31789.345540 eV Core-core repulsion = 26868.311494 eV Total energy + Delta-G solvation = -4921.034047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.38803 -48.02453 -47.69861 -42.10541 -40.99776 -38.80659 -37.15658 -36.49846 -35.02827 -34.10578 -32.73324 -30.27884 -28.11673 -26.61794 -26.40725 -25.50012 -23.46340 -23.09461 -21.31608 -20.23438 -19.43882 -18.98630 -18.86979 -18.75592 -18.59244 -17.82748 -17.41414 -17.09022 -16.74031 -16.41315 -16.06654 -15.73073 -15.17652 -15.10121 -14.93806 -14.80753 -14.65701 -14.46487 -14.42048 -14.27488 -14.17769 -13.98714 -13.86686 -13.72614 -13.27265 -13.02864 -12.81000 -12.73519 -12.59040 -12.58583 -12.33667 -12.22471 -11.99717 -11.95429 -11.56841 -11.55742 -11.47254 -11.09207 -10.64692 -10.15386 -9.52607 -8.17905 -6.48701 1.05660 1.48703 1.51850 1.57208 1.62463 2.04827 2.16238 2.39296 2.57885 2.96736 2.99268 3.43444 3.64215 3.74557 3.81553 3.90299 3.98405 4.07540 4.19274 4.30445 4.46802 4.48860 4.62058 4.67049 4.74618 4.80422 4.88357 4.93303 5.03718 5.10349 5.15616 5.42197 5.45617 5.48545 5.55852 5.59987 5.68424 5.99136 6.56002 6.95917 7.05222 7.21663 7.62530 8.74712 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.003504 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.565423 B = 7989.552212 C = 8502.872370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C 0.501 3.499 4 O -0.536 6.536 5 O -0.510 6.510 6 C -0.094 4.094 7 C -0.127 4.127 8 C 0.098 3.902 9 N -0.621 5.621 10 C 0.701 3.299 11 O -0.624 6.624 12 N -0.719 5.719 13 C 0.270 3.730 14 H 0.047 0.953 15 C -0.560 4.560 16 H 0.093 0.907 17 C 0.016 3.984 18 N -0.875 5.875 19 Si 0.983 3.017 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.262 1.262 23 C 0.412 3.588 24 F -0.221 7.221 25 F -0.203 7.203 26 F -0.151 7.151 27 C 0.145 3.855 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.428 0.572 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.408 0.592 39 H 0.268 0.732 40 H 0.082 0.918 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 9.134 -13.839 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 C 0.343 3.657 4 O -0.425 6.425 5 O -0.324 6.324 6 C -0.131 4.131 7 C -0.165 4.165 8 C -0.024 4.024 9 N -0.358 5.358 10 C 0.403 3.597 11 O -0.505 6.505 12 N -0.375 5.375 13 C 0.162 3.838 14 H 0.065 0.935 15 C -0.596 4.596 16 H 0.111 0.889 17 C -0.189 4.189 18 N -0.509 5.509 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.187 1.187 23 C 0.356 3.644 24 F -0.203 7.203 25 F -0.185 7.185 26 F -0.132 7.132 27 C 0.021 3.979 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.290 0.710 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.247 0.753 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.506 9.262 -13.147 16.999 hybrid contribution 0.164 -0.231 0.335 0.439 sum 5.670 9.031 -12.812 16.669 Atomic orbital electron populations 1.21799 0.91003 1.03474 1.02815 1.20918 0.98767 0.87704 0.99073 1.23200 0.75787 0.88384 0.78326 1.90701 1.36892 1.77647 1.37301 1.84566 1.71792 1.28802 1.47208 1.21458 1.01542 0.95387 0.94727 1.22056 1.01784 0.94541 0.98073 1.22114 1.01693 0.95108 0.83437 1.47133 1.58939 1.11139 1.18632 1.16077 0.78672 0.82244 0.82728 1.90878 1.58951 1.63788 1.36849 1.45154 1.65269 1.06860 1.20224 1.19180 0.87159 0.94875 0.82584 0.93521 1.21169 1.33935 1.08039 0.96491 0.88923 1.25982 0.96644 1.01711 0.94605 1.70530 1.38148 1.39501 1.02711 0.85223 0.78588 0.77777 0.77807 1.18983 1.21215 1.18661 1.23384 0.82789 0.73658 0.84584 1.93057 1.83455 1.52305 1.91452 1.92980 1.70021 1.71039 1.84434 1.93374 1.80937 1.82205 1.56720 1.21326 0.99671 0.79864 0.97051 0.92479 0.90539 0.91290 0.70977 0.89951 0.90427 0.90978 0.87061 0.89288 0.89448 0.75263 0.92212 0.89951 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 7.92 71.98 0.57 -2.27 16 2 C -0.06 -1.28 0.71 -52.85 -0.04 -1.32 16 3 C 0.50 10.35 6.93 71.24 0.49 10.85 16 4 O -0.54 -13.06 16.74 21.95 0.37 -12.69 16 5 O -0.51 -8.84 13.26 -51.36 -0.68 -9.52 16 6 C -0.09 -1.53 4.00 30.62 0.12 -1.41 16 7 C -0.13 -1.84 5.75 30.82 0.18 -1.66 16 8 C 0.10 1.90 6.42 86.51 0.56 2.45 16 9 N -0.62 -17.50 2.40 -836.06 -2.01 -19.51 16 10 C 0.70 27.54 7.74 179.05 1.39 28.93 16 11 O -0.62 -30.20 14.58 -3.99 -0.06 -30.25 16 12 N -0.72 -28.70 4.89 -461.42 -2.26 -30.96 16 13 C 0.27 13.42 2.22 44.24 0.10 13.52 16 14 H 0.05 2.71 7.51 -2.39 -0.02 2.69 16 15 C -0.56 -27.65 8.46 25.60 0.22 -27.43 16 16 H 0.09 4.16 7.74 -2.91 -0.02 4.13 16 17 C 0.02 0.81 5.20 84.66 0.44 1.25 16 18 N -0.87 -48.11 9.51 21.45 0.20 -47.91 16 19 Si 0.98 39.69 29.54 68.60 2.03 41.72 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 C 0.41 21.30 2.81 71.98 0.20 21.50 16 24 F -0.22 -11.45 15.88 44.97 0.71 -10.73 16 25 F -0.20 -9.83 16.94 44.97 0.76 -9.06 16 26 F -0.15 -8.51 12.92 44.97 0.58 -7.93 16 27 C 0.14 3.69 5.05 86.36 0.44 4.13 16 28 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.62 5.97 -2.39 -0.01 1.60 16 31 H 0.43 3.36 9.10 -74.06 -0.67 2.68 16 32 H 0.08 1.28 8.07 -2.39 -0.02 1.26 16 33 H 0.08 1.25 8.13 -2.38 -0.02 1.23 16 34 H 0.07 1.16 6.33 -2.39 -0.02 1.14 16 35 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.09 1.66 5.64 -2.39 -0.01 1.65 16 38 H 0.41 13.53 6.03 -92.70 -0.56 12.98 16 39 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 40 H 0.08 2.57 6.99 -2.39 -0.02 2.55 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.31 341.70 4.19 -66.12 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.12 Total: 22.19 kcal Atomic # 6 Polarization: 43.88 SS G_CDS: 4.66 Total: 48.54 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -4.07 Total: -98.37 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -0.37 Total: -52.47 kcal Atomic # 9 Polarization: -29.78 SS G_CDS: 2.06 Total: -27.73 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -70.31 4.19 -66.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604493111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.390 kcal (2) G-P(sol) polarization free energy of solvation -70.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds