Wall clock time and date at job start Tue Mar 31 2020 20:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.49897 * 2 1 4 4 O 1.20828 * 120.00117 * 120.06350 * 3 2 1 5 5 O 1.34236 * 120.00115 * 300.06840 * 3 2 1 6 6 C 1.53042 * 109.50060 * 120.06523 * 2 1 3 7 7 C 1.53037 * 109.53439 * 58.58793 * 6 2 1 8 8 C 1.53186 * 109.31624 * 61.36514 * 7 6 2 9 9 N 1.46929 * 108.77594 * 305.36315 * 8 7 6 10 10 C 1.34776 * 120.63208 * 233.58474 * 9 8 7 11 11 O 1.21588 * 119.99773 * 185.06199 * 10 9 8 12 12 N 1.34775 * 120.00073 * 5.06575 * 10 9 8 13 13 C 1.46498 * 119.99997 * 174.88026 * 12 10 9 14 14 H 1.08997 * 109.47057 * 325.26996 * 13 12 10 15 15 C 1.50700 * 109.46976 * 205.27218 * 13 12 10 16 16 H 1.07996 * 120.00468 * 275.01193 * 15 13 12 17 17 C 1.37877 * 119.99904 * 95.01013 * 15 13 12 18 18 N 1.31519 * 120.00278 * 174.92649 * 17 15 13 19 19 Si 1.86801 * 120.00077 * 354.92285 * 17 15 13 20 20 H 1.48503 * 109.46695 * 94.92306 * 19 17 15 21 21 H 1.48498 * 109.47351 * 214.92186 * 19 17 15 22 22 H 1.48496 * 109.47337 * 334.92439 * 19 17 15 23 23 C 1.52998 * 109.47527 * 85.27284 * 13 12 10 24 24 F 1.39906 * 109.46952 * 64.84815 * 23 13 12 25 25 F 1.39895 * 109.47120 * 184.85204 * 23 13 12 26 26 F 1.39904 * 109.47113 * 304.85358 * 23 13 12 27 27 C 1.46923 * 118.73763 * 53.85866 * 9 8 7 28 28 H 1.09002 * 109.46529 * 299.93176 * 1 2 3 29 29 H 1.08993 * 109.47172 * 59.92921 * 1 2 3 30 30 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 31 31 H 0.96696 * 116.99788 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.46087 * 298.56677 * 6 2 1 33 33 H 1.09002 * 109.46038 * 178.60495 * 6 2 1 34 34 H 1.09000 * 109.50078 * 301.41414 * 7 6 2 35 35 H 1.09007 * 109.49699 * 181.31482 * 7 6 2 36 36 H 1.09008 * 109.59231 * 185.57665 * 8 7 6 37 37 H 1.09000 * 109.59042 * 65.14865 * 8 7 6 38 38 H 0.97007 * 120.00091 * 355.15081 * 12 10 9 39 39 H 0.96992 * 120.00713 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58589 * 65.92871 * 27 9 8 41 41 H 1.08995 * 109.58862 * 186.35262 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4206 0.0000 4 8 2.7288 1.8151 0.9056 5 8 1.7080 2.2477 -1.0061 6 6 2.0409 -0.7227 1.2485 7 6 1.5031 -2.1554 1.2665 8 6 2.0140 -2.9039 0.0315 9 7 1.6515 -2.1384 -1.1691 10 6 0.9747 -2.7226 -2.1776 11 8 0.7609 -2.1061 -3.2036 12 7 0.5349 -3.9900 -2.0489 13 6 -0.2962 -4.5870 -3.0973 14 1 -0.9419 -3.8221 -3.5286 15 6 -1.1431 -5.6831 -2.5037 16 1 -0.7408 -6.6798 -2.3989 17 6 -2.4318 -5.4134 -2.0942 18 7 -3.2046 -6.3890 -1.6692 19 14 -3.0801 -3.6622 -2.1428 20 1 -3.8141 -3.4414 -3.4147 21 1 -3.9984 -3.4422 -0.9967 22 1 -1.9432 -2.7108 -2.0559 23 6 0.6020 -5.1713 -4.1893 24 9 1.3517 -6.2277 -3.6608 25 9 -0.1899 -5.6424 -5.2420 26 9 1.4657 -4.1782 -4.6637 27 6 2.0461 -0.7256 -1.2519 28 1 -0.3632 0.5128 0.8906 29 1 -0.3633 0.5149 -0.8893 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0539 3.1496 -0.9620 32 1 1.6988 -0.1953 2.1389 33 1 3.1306 -0.7441 1.2354 34 1 0.4133 -2.1352 1.2546 35 1 1.8482 -2.6623 2.1677 36 1 1.5554 -3.8919 -0.0128 37 1 3.0980 -3.0042 0.0874 38 1 0.7653 -4.5057 -1.2602 39 1 -4.1110 -6.1993 -1.3808 40 1 3.1326 -0.6518 -1.2984 41 1 1.6088 -0.2757 -2.1431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604493112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:23 Heat of formation + Delta-G solvation = -275.452456 kcal Electronic energy + Delta-G solvation = -32006.121697 eV Core-core repulsion = 27085.003472 eV Total energy + Delta-G solvation = -4921.118224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.00750 -46.51704 -46.50438 -41.11334 -39.77483 -37.66817 -36.30342 -34.85561 -33.72677 -32.48605 -31.79676 -29.13715 -27.15649 -25.40588 -24.95933 -24.50913 -22.33856 -21.38192 -19.95765 -19.02022 -18.43651 -18.10871 -17.55166 -17.48323 -16.82055 -16.57640 -16.42071 -16.07883 -15.55318 -14.94669 -14.74068 -14.59366 -14.07128 -13.84754 -13.64142 -13.47587 -13.42100 -13.13503 -13.04848 -12.94593 -12.87010 -12.70555 -12.64323 -12.57872 -12.37105 -11.93549 -11.78189 -11.74483 -11.44588 -11.19229 -11.09718 -11.07501 -10.72191 -10.70004 -10.52535 -10.15491 -9.80286 -9.64130 -9.04491 -8.63074 -8.22645 -6.56790 -4.72117 1.95350 2.69335 2.99700 3.11731 3.18048 3.27698 3.58820 3.97068 4.07288 4.20482 4.33115 4.55144 4.61670 4.83968 4.87488 4.94246 5.10628 5.22710 5.24697 5.28898 5.38953 5.46849 5.57636 5.60277 5.65345 5.72267 5.73687 5.78359 5.95295 6.00834 6.24047 6.25984 6.27859 6.62147 6.87378 7.17239 7.31065 7.68170 7.87571 8.50118 8.53135 8.99175 9.10776 10.51278 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.004448 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.042490 B = 6293.668630 C = 6959.718324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C 0.494 3.506 4 O -0.516 6.516 5 O -0.509 6.509 6 C -0.097 4.097 7 C -0.137 4.137 8 C 0.108 3.892 9 N -0.632 5.632 10 C 0.699 3.301 11 O -0.587 6.587 12 N -0.728 5.728 13 C 0.221 3.779 14 H 0.088 0.912 15 C -0.536 4.536 16 H 0.094 0.906 17 C 0.100 3.900 18 N -0.858 5.858 19 Si 0.868 3.132 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.250 1.250 23 C 0.437 3.563 24 F -0.192 7.192 25 F -0.186 7.186 26 F -0.193 7.193 27 C 0.147 3.853 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.408 0.592 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.395 0.605 39 H 0.275 0.725 40 H 0.066 0.934 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.494 10.955 5.946 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C 0.336 3.664 4 O -0.404 6.404 5 O -0.320 6.320 6 C -0.134 4.134 7 C -0.176 4.176 8 C -0.016 4.016 9 N -0.371 5.371 10 C 0.401 3.599 11 O -0.464 6.464 12 N -0.385 5.385 13 C 0.118 3.882 14 H 0.106 0.894 15 C -0.574 4.574 16 H 0.112 0.888 17 C -0.110 4.110 18 N -0.490 5.490 19 Si 0.693 3.307 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.174 1.174 23 C 0.381 3.619 24 F -0.174 7.174 25 F -0.167 7.167 26 F -0.175 7.175 27 C 0.022 3.978 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.233 0.767 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.167 10.998 5.445 14.742 hybrid contribution 0.112 1.117 0.376 1.183 sum 8.280 12.115 5.821 15.786 Atomic orbital electron populations 1.21873 0.90929 1.04258 1.02679 1.21052 0.98855 0.87518 0.99546 1.23327 0.76356 0.88307 0.78448 1.90702 1.35913 1.77249 1.36505 1.84597 1.71955 1.27337 1.48101 1.21447 1.01276 0.95268 0.95439 1.22023 1.02251 0.95002 0.98290 1.21679 1.00208 0.95448 0.84264 1.47246 1.60599 1.10526 1.18732 1.16282 0.77991 0.82767 0.82859 1.90879 1.62900 1.64582 1.28075 1.46982 1.54945 1.11878 1.24702 1.19918 0.87317 0.95929 0.85079 0.89422 1.20785 0.97034 0.95555 1.43994 0.88754 1.25007 0.95930 0.97607 0.92479 1.69864 1.08249 1.32196 1.38740 0.86923 0.80149 0.84806 0.78837 1.19388 1.20574 1.17366 1.21730 0.79986 0.76013 0.84127 1.93066 1.78370 1.59479 1.86448 1.93094 1.74325 1.89205 1.60095 1.93149 1.72570 1.61771 1.89995 1.21347 0.98991 0.80839 0.96586 0.92222 0.91076 0.90183 0.73333 0.90771 0.90814 0.90507 0.89937 0.89391 0.91315 0.76701 0.91463 0.91628 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.92 37.16 0.29 -1.40 16 2 C -0.07 -0.78 0.71 -155.31 -0.11 -0.89 16 3 C 0.49 5.64 6.93 36.01 0.25 5.89 16 4 O -0.52 -6.92 16.74 -18.75 -0.31 -7.23 16 5 O -0.51 -4.80 13.26 -39.27 -0.52 -5.32 16 6 C -0.10 -0.98 4.00 -26.69 -0.11 -1.09 16 7 C -0.14 -1.34 5.74 -26.62 -0.15 -1.49 16 8 C 0.11 1.22 6.43 -3.71 -0.02 1.20 16 9 N -0.63 -9.36 2.40 -178.23 -0.43 -9.78 16 10 C 0.70 13.45 7.81 -86.92 -0.68 12.77 16 11 O -0.59 -13.25 14.19 5.29 0.08 -13.17 16 12 N -0.73 -14.29 4.94 -59.82 -0.30 -14.58 16 13 C 0.22 5.02 1.49 -69.08 -0.10 4.91 16 14 H 0.09 2.12 5.10 -51.93 -0.27 1.86 16 15 C -0.54 -13.31 8.67 -34.44 -0.30 -13.61 16 16 H 0.09 2.54 7.69 -52.49 -0.40 2.13 16 17 C 0.10 2.54 5.47 -17.82 -0.10 2.44 16 18 N -0.86 -23.03 13.96 55.43 0.77 -22.25 16 19 Si 0.87 19.51 27.07 -169.99 -4.60 14.91 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.25 -5.62 6.77 56.52 0.38 -5.23 16 23 C 0.44 9.77 2.83 37.16 0.11 9.87 16 24 F -0.19 -4.15 16.64 2.25 0.04 -4.11 16 25 F -0.19 -4.23 17.14 2.25 0.04 -4.19 16 26 F -0.19 -4.32 15.38 2.25 0.03 -4.28 16 27 C 0.15 1.94 5.07 -3.49 -0.02 1.93 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 30 H 0.08 1.09 5.97 -51.93 -0.31 0.78 16 31 H 0.41 1.97 9.10 45.56 0.41 2.39 16 32 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.08 0.83 6.33 -51.93 -0.33 0.50 16 35 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.09 1.01 5.56 -51.92 -0.29 0.72 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.39 6.89 6.05 -40.82 -0.25 6.64 16 39 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.11 1.62 7.03 -51.93 -0.37 1.26 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -31.19 343.80 -4.86 -36.05 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.90 Total: 8.26 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: -0.94 Total: 20.53 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.05 Total: -46.62 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.76 Total: -25.73 kcal Atomic # 9 Polarization: -12.69 SS G_CDS: 0.11 Total: -12.58 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.60 Total: 14.91 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.19 -4.86 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604493112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.406 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds