Wall clock time and date at job start Tue Mar 31 2020 20:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30705 * 122.11092 * 2 1 4 4 C 1.30557 * 115.91059 * 180.02562 * 3 2 1 5 5 C 1.47252 * 125.53990 * 179.97438 * 4 3 2 6 6 O 1.21619 * 120.00438 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99845 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00005 * 180.02562 * 7 5 4 9 9 C 1.53936 * 113.83039 * 106.32600 * 8 7 5 10 10 N 1.47963 * 86.18081 * 90.64735 * 9 8 7 11 11 C 1.46905 * 110.99442 * 137.58205 * 10 9 8 12 12 C 1.50701 * 109.47159 * 70.64116 * 11 10 9 13 13 O 1.21289 * 119.99845 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99976 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00115 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00206 * 0.02562 * 15 14 12 17 17 C 1.38953 * 120.00229 * 180.02562 * 15 14 12 18 18 N 1.31416 * 119.99997 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00278 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47504 * 89.99018 * 19 17 15 21 21 H 1.48499 * 109.47077 * 209.99863 * 19 17 15 22 22 H 1.48505 * 109.46739 * 329.99461 * 19 17 15 23 23 C 1.47962 * 90.76258 * 24.69072 * 10 9 8 24 24 S 1.76097 * 108.91324 * 0.25995 * 4 3 2 25 25 C 1.34232 * 122.10969 * 180.02562 * 2 1 3 26 26 C 1.50701 * 125.45590 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47020 * 89.97970 * 1 2 3 28 28 H 1.09001 * 109.47113 * 209.97851 * 1 2 3 29 29 H 1.08998 * 109.47559 * 329.98244 * 1 2 3 30 30 H 0.97002 * 120.00027 * 359.97438 * 7 5 4 31 31 H 1.09002 * 112.93917 * 334.66429 * 8 7 5 32 32 H 1.09003 * 113.75649 * 204.96870 * 9 8 7 33 33 H 1.09007 * 113.75829 * 336.32990 * 9 8 7 34 34 H 1.08998 * 109.46445 * 190.64141 * 11 10 9 35 35 H 1.09000 * 109.47062 * 310.63837 * 11 10 9 36 36 H 0.97005 * 119.99820 * 0.02562 * 14 12 11 37 37 H 0.96991 * 120.00444 * 180.02562 * 18 17 15 38 38 H 1.08991 * 113.75516 * 220.99362 * 23 10 9 39 39 H 1.08998 * 113.86153 * 89.63735 * 23 10 9 40 40 H 1.09000 * 109.47255 * 89.99569 * 26 25 2 41 41 H 1.08999 * 109.47513 * 210.00212 * 26 25 2 42 42 H 1.09000 * 109.47082 * 330.00059 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2017 1.1071 0.0000 4 6 3.4996 0.9661 -0.0005 5 6 4.4800 2.0648 -0.0012 6 8 4.0990 3.2198 -0.0017 7 7 5.7996 1.7906 -0.0012 8 6 6.7749 2.8837 -0.0012 9 6 7.4844 3.0843 1.3501 10 7 8.5048 2.1408 0.8422 11 6 9.8596 2.6024 1.1733 12 6 10.0901 2.4610 2.6559 13 8 9.2120 2.0196 3.3667 14 7 11.2719 2.8249 3.1918 15 6 11.4818 2.6958 4.5404 16 1 10.7003 2.3020 5.1733 17 6 12.7001 3.0715 5.0931 18 7 13.6513 3.5503 4.3229 19 14 12.9864 2.8949 6.9305 20 1 13.5529 1.5523 7.2165 21 1 13.9371 3.9407 7.3861 22 1 11.6965 3.0513 7.6497 23 6 8.1546 2.4829 -0.5541 24 16 3.8872 -0.7517 -0.0086 25 6 2.2204 -1.1370 -0.0005 26 6 1.6453 -2.5299 -0.0017 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 6.1035 0.8694 -0.0003 31 1 6.3808 3.8047 -0.4308 32 1 7.8593 4.0963 1.5032 33 1 6.9209 2.7047 2.2025 34 1 10.5904 2.0009 0.6329 35 1 9.9671 3.6486 0.8871 36 1 11.9740 3.1783 2.6233 37 1 14.5018 3.8122 4.7086 38 1 8.1266 1.6228 -1.2230 39 1 8.7248 3.3186 -0.9596 40 1 1.5070 -2.8651 -1.0296 41 1 2.3290 -3.2058 0.5120 42 1 0.6838 -2.5265 0.5118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665231538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:04 Heat of formation + Delta-G solvation = 13.796223 kcal Electronic energy + Delta-G solvation = -25699.003028 eV Core-core repulsion = 21807.329930 eV Total energy + Delta-G solvation = -3891.673098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77852 -40.22677 -38.85062 -37.63298 -34.21387 -33.82971 -33.60549 -31.29086 -30.32212 -29.82999 -27.01035 -26.06882 -25.59896 -24.99627 -23.49807 -21.54479 -20.08758 -19.24674 -19.09068 -18.71268 -17.90946 -17.38960 -16.35914 -16.15631 -15.83213 -15.38977 -15.22967 -14.77386 -14.61425 -14.50008 -14.13111 -13.75797 -13.56920 -13.47212 -13.38697 -13.36140 -13.11189 -12.76331 -12.51588 -12.40053 -12.01858 -11.60200 -11.55869 -11.50547 -11.24728 -11.06789 -10.82459 -10.63884 -10.40340 -10.22775 -9.90700 -9.79055 -9.52068 -9.31187 -8.95557 -8.71984 -8.25921 -7.97779 -6.43091 -3.83858 -0.09271 0.81304 1.24332 2.01311 2.54221 2.96059 3.16915 3.25704 3.31631 3.86168 3.93587 4.04132 4.18153 4.38409 4.41648 4.51734 4.59444 4.83770 4.93360 4.97007 5.01967 5.20473 5.23486 5.33064 5.34594 5.38357 5.44317 5.46659 5.57312 5.61016 5.68761 5.81980 5.86087 6.08311 6.22650 6.36512 6.55827 7.03676 7.12026 7.37064 7.53944 7.87088 8.04166 8.59706 9.16631 9.52513 10.04115 10.74623 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.002076 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.093736 B =13487.023827 C =14115.772776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.047 3.953 3 N -0.393 5.393 4 C -0.005 4.005 5 C 0.599 3.401 6 O -0.501 6.501 7 N -0.692 5.692 8 C 0.114 3.886 9 C 0.011 3.989 10 N -0.454 5.454 11 C 0.009 3.991 12 C 0.443 3.557 13 O -0.579 6.579 14 N -0.564 5.564 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.008 4.008 24 S 0.186 5.814 25 C -0.230 4.230 26 C -0.079 4.079 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.406 0.594 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.287 -9.483 -14.689 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 N -0.109 5.109 4 C -0.281 4.281 5 C 0.380 3.620 6 O -0.374 6.374 7 N -0.344 5.344 8 C 0.008 3.992 9 C -0.119 4.119 10 N -0.177 5.177 11 C -0.123 4.123 12 C 0.228 3.772 13 O -0.463 6.463 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.137 4.137 24 S 0.442 5.558 25 C -0.353 4.353 26 C -0.137 4.137 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.241 0.759 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.175 -9.552 -13.934 25.555 hybrid contribution 0.263 0.526 0.414 0.719 sum -18.912 -9.026 -13.520 24.938 Atomic orbital electron populations 1.20411 0.86785 1.03583 1.03071 1.20239 0.98893 0.85662 1.04213 1.66476 1.03467 1.30451 1.10509 1.27222 0.94207 0.95355 1.11341 1.16642 0.81357 0.86625 0.77347 1.90856 1.79098 1.19501 1.47974 1.45303 1.04086 1.10475 1.74533 1.22482 0.87990 0.90624 0.98074 1.24296 0.93441 0.96414 0.97778 1.68456 1.02272 1.43708 1.03268 1.22466 0.92995 0.99473 0.97331 1.19676 0.84181 0.84872 0.88481 1.90527 1.43976 1.49820 1.61957 1.41868 1.12911 1.56347 1.08957 1.19688 0.99887 1.39979 0.83242 0.87960 1.25265 0.95333 0.96959 1.00422 1.69607 1.05388 1.43268 1.36054 0.85858 0.78356 0.77906 0.82176 1.20392 1.20924 1.19433 1.24414 0.93934 1.01450 0.93930 1.83913 1.04389 1.03005 1.64472 1.25457 0.97715 1.01939 1.10207 1.20341 1.01434 0.88611 1.03349 0.90523 0.90529 0.90340 0.75868 0.87292 0.90294 0.88341 0.89042 0.92543 0.77498 0.91871 0.88827 0.89676 0.90004 0.90631 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.01 36.00 0.36 -0.20 16 2 C 0.05 0.49 6.68 -84.49 -0.56 -0.07 16 3 N -0.39 -5.35 10.57 -7.69 -0.08 -5.43 16 4 C -0.01 -0.07 7.46 -14.43 -0.11 -0.17 16 5 C 0.60 8.48 7.81 -12.60 -0.10 8.38 16 6 O -0.50 -8.80 16.69 5.26 0.09 -8.71 16 7 N -0.69 -8.34 5.37 -56.07 -0.30 -8.64 16 8 C 0.11 1.40 4.40 -69.62 -0.31 1.09 16 9 C 0.01 0.16 6.56 -2.76 -0.02 0.15 16 10 N -0.45 -7.01 5.95 -239.87 -1.43 -8.43 16 11 C 0.01 0.16 5.31 -4.97 -0.03 0.13 16 12 C 0.44 10.29 7.59 -10.99 -0.08 10.21 16 13 O -0.58 -15.52 15.12 5.55 0.08 -15.44 16 14 N -0.56 -14.17 5.29 -10.97 -0.06 -14.23 16 15 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 16 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 17 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 18 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 19 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.01 -0.08 7.71 -2.76 -0.02 -0.10 16 24 S 0.19 1.69 22.28 -107.50 -2.39 -0.70 16 25 C -0.23 -1.97 6.36 -35.72 -0.23 -2.19 16 26 C -0.08 -0.39 10.04 36.01 0.36 -0.02 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.37 6.60 -51.93 -0.34 0.02 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.41 4.25 7.88 -40.82 -0.32 3.93 16 31 H 0.11 1.31 7.50 -51.93 -0.39 0.92 16 32 H 0.08 1.20 7.78 -51.93 -0.40 0.79 16 33 H 0.10 1.78 8.09 -51.93 -0.42 1.36 16 34 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16 36 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.79 7.80 -51.93 -0.40 0.39 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.31 6.65 -51.93 -0.35 -0.03 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -35.13 372.53 -9.15 -44.27 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.40 Total: 10.12 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -0.97 Total: 9.23 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -1.14 Total: -60.44 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: 0.17 Total: -24.15 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.39 Total: -0.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.13 -9.15 -44.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665231538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.071 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds