Wall clock time and date at job start Tue Mar 31 2020 20:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30705 * 122.11092 * 2 1 4 4 C 1.30557 * 115.91059 * 180.02562 * 3 2 1 5 5 C 1.47252 * 125.53990 * 179.97438 * 4 3 2 6 6 O 1.21619 * 120.00438 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99845 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00005 * 180.02562 * 7 5 4 9 9 C 1.53936 * 113.83039 * 106.32600 * 8 7 5 10 10 N 1.47963 * 86.18081 * 90.64735 * 9 8 7 11 11 C 1.46905 * 110.99442 * 137.58205 * 10 9 8 12 12 C 1.50701 * 109.47159 * 70.64116 * 11 10 9 13 13 O 1.21289 * 119.99845 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99976 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00115 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00206 * 0.02562 * 15 14 12 17 17 C 1.38953 * 120.00229 * 180.02562 * 15 14 12 18 18 N 1.31416 * 119.99997 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00278 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47504 * 89.99018 * 19 17 15 21 21 H 1.48499 * 109.47077 * 209.99863 * 19 17 15 22 22 H 1.48505 * 109.46739 * 329.99461 * 19 17 15 23 23 C 1.47962 * 90.76258 * 24.69072 * 10 9 8 24 24 S 1.76097 * 108.91324 * 0.25995 * 4 3 2 25 25 C 1.34232 * 122.10969 * 180.02562 * 2 1 3 26 26 C 1.50701 * 125.45590 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47020 * 89.97970 * 1 2 3 28 28 H 1.09001 * 109.47113 * 209.97851 * 1 2 3 29 29 H 1.08998 * 109.47559 * 329.98244 * 1 2 3 30 30 H 0.97002 * 120.00027 * 359.97438 * 7 5 4 31 31 H 1.09002 * 112.93917 * 334.66429 * 8 7 5 32 32 H 1.09003 * 113.75649 * 204.96870 * 9 8 7 33 33 H 1.09007 * 113.75829 * 336.32990 * 9 8 7 34 34 H 1.08998 * 109.46445 * 190.64141 * 11 10 9 35 35 H 1.09000 * 109.47062 * 310.63837 * 11 10 9 36 36 H 0.97005 * 119.99820 * 0.02562 * 14 12 11 37 37 H 0.96991 * 120.00444 * 180.02562 * 18 17 15 38 38 H 1.08991 * 113.75516 * 220.99362 * 23 10 9 39 39 H 1.08998 * 113.86153 * 89.63735 * 23 10 9 40 40 H 1.09000 * 109.47255 * 89.99569 * 26 25 2 41 41 H 1.08999 * 109.47513 * 210.00212 * 26 25 2 42 42 H 1.09000 * 109.47082 * 330.00059 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2017 1.1071 0.0000 4 6 3.4996 0.9661 -0.0005 5 6 4.4800 2.0648 -0.0012 6 8 4.0990 3.2198 -0.0017 7 7 5.7996 1.7906 -0.0012 8 6 6.7749 2.8837 -0.0012 9 6 7.4844 3.0843 1.3501 10 7 8.5048 2.1408 0.8422 11 6 9.8596 2.6024 1.1733 12 6 10.0901 2.4610 2.6559 13 8 9.2120 2.0196 3.3667 14 7 11.2719 2.8249 3.1918 15 6 11.4818 2.6958 4.5404 16 1 10.7003 2.3020 5.1733 17 6 12.7001 3.0715 5.0931 18 7 13.6513 3.5503 4.3229 19 14 12.9864 2.8949 6.9305 20 1 13.5529 1.5523 7.2165 21 1 13.9371 3.9407 7.3861 22 1 11.6965 3.0513 7.6497 23 6 8.1546 2.4829 -0.5541 24 16 3.8872 -0.7517 -0.0086 25 6 2.2204 -1.1370 -0.0005 26 6 1.6453 -2.5299 -0.0017 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 6.1035 0.8694 -0.0003 31 1 6.3808 3.8047 -0.4308 32 1 7.8593 4.0963 1.5032 33 1 6.9209 2.7047 2.2025 34 1 10.5904 2.0009 0.6329 35 1 9.9671 3.6486 0.8871 36 1 11.9740 3.1783 2.6233 37 1 14.5018 3.8122 4.7086 38 1 8.1266 1.6228 -1.2230 39 1 8.7248 3.3186 -0.9596 40 1 1.5070 -2.8651 -1.0296 41 1 2.3290 -3.2058 0.5120 42 1 0.6838 -2.5265 0.5118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665231538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:03 Heat of formation + Delta-G solvation = -15.866785 kcal Electronic energy + Delta-G solvation = -25700.289313 eV Core-core repulsion = 21807.329930 eV Total energy + Delta-G solvation = -3892.959382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82144 -41.16570 -40.14022 -39.26191 -35.97721 -35.18924 -34.30360 -33.28993 -31.32939 -30.70990 -28.03718 -27.17554 -26.98537 -25.92125 -24.89853 -22.49551 -21.34897 -20.82400 -19.96656 -19.88518 -19.51485 -18.30351 -17.82330 -17.39651 -16.82557 -16.70468 -16.46108 -16.40116 -15.78945 -15.70316 -15.44587 -14.97191 -14.88937 -14.52049 -14.14131 -14.02223 -13.84071 -13.76942 -13.62973 -13.46466 -13.30157 -13.02437 -12.86032 -12.69975 -12.46775 -12.37524 -12.18563 -12.15129 -11.95242 -11.70601 -11.50291 -10.80357 -10.52429 -10.38683 -10.33542 -10.01405 -9.72971 -9.66861 -8.47317 -5.95595 -0.91023 0.03450 0.49293 1.14463 1.36673 1.40436 1.52853 1.59692 2.00349 2.05920 2.28059 2.80081 3.18908 3.21951 3.23360 3.52027 3.69948 3.75685 3.85433 3.97031 4.20328 4.29624 4.45684 4.48735 4.53951 4.55859 4.61182 4.64949 4.72615 4.73507 4.77937 4.83879 4.91246 5.03507 5.29735 5.33056 5.34245 5.40547 5.84090 6.04529 6.13382 6.55983 6.60198 6.85943 7.12815 7.56558 8.12776 8.70002 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.002076 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.093736 B =13487.023827 C =14115.772776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.020 3.980 3 N -0.427 5.427 4 C -0.054 4.054 5 C 0.599 3.401 6 O -0.548 6.548 7 N -0.682 5.682 8 C 0.122 3.878 9 C 0.002 3.998 10 N -0.475 5.475 11 C 0.022 3.978 12 C 0.439 3.561 13 O -0.620 6.620 14 N -0.574 5.574 15 C -0.332 4.332 16 H 0.076 0.924 17 C -0.013 4.013 18 N -0.919 5.919 19 Si 0.991 3.009 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.275 1.275 23 C 0.012 3.988 24 S 0.238 5.762 25 C -0.215 4.215 26 C -0.082 4.082 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.414 0.586 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.218 -11.384 -16.100 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 N -0.145 5.145 4 C -0.327 4.327 5 C 0.382 3.618 6 O -0.426 6.426 7 N -0.333 5.333 8 C 0.016 3.984 9 C -0.128 4.128 10 N -0.198 5.198 11 C -0.110 4.110 12 C 0.226 3.774 13 O -0.506 6.506 14 N -0.212 5.212 15 C -0.461 4.461 16 H 0.094 0.906 17 C -0.213 4.213 18 N -0.560 5.560 19 Si 0.815 3.185 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.200 1.200 23 C -0.117 4.117 24 S 0.494 5.506 25 C -0.338 4.338 26 C -0.141 4.141 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.251 0.749 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.066 -11.465 -15.379 27.045 hybrid contribution 0.160 0.978 0.835 1.296 sum -18.906 -10.487 -14.544 26.057 Atomic orbital electron populations 1.20518 0.84835 1.04275 1.04017 1.20726 1.00315 0.85474 1.05177 1.66464 1.04301 1.32745 1.10988 1.26922 0.94022 0.97096 1.14670 1.16941 0.82007 0.86568 0.76302 1.90808 1.79909 1.21441 1.50397 1.45241 1.03563 1.10920 1.73621 1.22421 0.88821 0.91107 0.96094 1.24244 0.94241 0.96191 0.98151 1.68445 1.01151 1.43987 1.06227 1.22387 0.94607 1.01676 0.92305 1.20844 0.82736 0.82618 0.91179 1.90502 1.45067 1.51110 1.63960 1.41939 1.13864 1.57141 1.08271 1.19610 1.00060 1.41842 0.84630 0.90618 1.26009 0.94662 0.96140 1.04485 1.69661 1.05657 1.43147 1.37549 0.84959 0.78034 0.78418 0.77114 1.19560 1.19494 1.20046 1.24518 0.91980 1.03463 0.91714 1.83635 1.04601 0.99515 1.62873 1.26064 0.97393 1.03286 1.07090 1.20590 1.02317 0.86173 1.04980 0.89419 0.87832 0.91640 0.74901 0.86884 0.90355 0.92099 0.86598 0.89952 0.76937 0.91311 0.86226 0.86912 0.88023 0.89527 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.01 71.23 0.71 -0.29 16 2 C 0.02 0.41 6.68 41.81 0.28 0.69 16 3 N -0.43 -11.98 10.57 -178.25 -1.88 -13.87 16 4 C -0.05 -1.41 7.46 87.25 0.65 -0.76 16 5 C 0.60 17.67 7.81 86.61 0.68 18.35 16 6 O -0.55 -20.44 16.69 -4.09 -0.07 -20.51 16 7 N -0.68 -16.46 5.37 -449.56 -2.41 -18.88 16 8 C 0.12 2.91 4.40 46.56 0.20 3.12 16 9 C 0.00 0.07 6.56 86.41 0.57 0.63 16 10 N -0.47 -14.03 5.95 -912.82 -5.43 -19.46 16 11 C 0.02 0.70 5.31 85.56 0.45 1.15 16 12 C 0.44 20.62 7.59 87.66 0.67 21.29 16 13 O -0.62 -34.38 15.12 -3.06 -0.05 -34.43 16 14 N -0.57 -29.28 5.29 -306.99 -1.62 -30.91 16 15 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 16 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 17 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 18 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 19 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 C 0.01 0.22 7.71 86.41 0.67 0.89 16 24 S 0.24 4.02 22.28 -56.49 -1.26 2.76 16 25 C -0.21 -3.24 6.36 24.77 0.16 -3.08 16 26 C -0.08 -0.51 10.04 71.24 0.72 0.20 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 0.72 6.60 -2.39 -0.02 0.70 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.41 8.39 7.88 -92.71 -0.73 7.66 16 31 H 0.11 2.68 7.50 -2.39 -0.02 2.66 16 32 H 0.08 2.43 7.78 -2.39 -0.02 2.41 16 33 H 0.06 2.35 8.09 -2.38 -0.02 2.34 16 34 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.08 2.25 7.69 -2.39 -0.02 2.24 16 36 H 0.40 19.05 7.90 -92.70 -0.73 18.32 16 37 H 0.28 13.98 8.31 -92.72 -0.77 13.21 16 38 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 1.61 7.80 -2.39 -0.02 1.59 16 40 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.10 0.34 6.65 -2.39 -0.02 0.33 16 Total: -1.00 -80.66 372.53 -3.76 -84.42 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.37 Total: 30.93 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 7.03 Total: 23.85 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -11.07 Total: -132.28 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -0.11 Total: -54.94 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.26 Total: 2.76 kcal Total: -80.66 -3.76 -84.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665231538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.555 kcal (2) G-P(sol) polarization free energy of solvation -80.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds