Wall clock time and date at job start Tue Mar 31 2020 20:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29422 * 124.80280 * 2 1 4 4 C 1.30949 * 117.36212 * 179.72997 * 3 2 1 5 5 C 1.35664 * 114.18980 * 0.52633 * 4 3 2 6 6 C 1.46680 * 126.13041 * 179.78510 * 5 4 3 7 7 O 1.21683 * 120.00091 * 359.71355 * 6 5 4 8 8 N 1.34777 * 119.99703 * 179.71026 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72441 * 8 6 5 10 10 H 1.09004 * 110.27594 * 33.18831 * 9 8 6 11 11 C 1.54597 * 110.31136 * 270.99566 * 9 8 6 12 12 C 1.54942 * 102.92338 * 219.13014 * 11 9 8 13 13 N 1.48531 * 103.22581 * 37.41052 * 12 11 9 14 14 C 1.46901 * 110.99664 * 200.28327 * 13 12 11 15 15 C 1.50705 * 109.46966 * 287.39464 * 14 13 12 16 16 O 1.21290 * 120.00077 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99532 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99570 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00037 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00089 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99750 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47053 * 90.00141 * 22 20 18 24 24 H 1.48501 * 109.46853 * 210.00246 * 22 20 18 25 25 H 1.48499 * 109.47043 * 329.99969 * 22 20 18 26 26 C 1.47899 * 105.81979 * 320.79327 * 13 12 11 27 27 S 1.70953 * 124.80052 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47163 * 269.97608 * 1 2 3 29 29 H 1.08998 * 109.47147 * 29.97451 * 1 2 3 30 30 H 1.09000 * 109.47597 * 149.97931 * 1 2 3 31 31 H 1.07996 * 122.90654 * 180.34258 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.09011 * 110.72164 * 337.48340 * 11 9 8 34 34 H 1.08994 * 110.73050 * 100.76604 * 11 9 8 35 35 H 1.09000 * 110.66507 * 278.97443 * 12 11 9 36 36 H 1.09003 * 110.66802 * 155.84801 * 12 11 9 37 37 H 1.09001 * 109.47322 * 47.39516 * 14 13 12 38 38 H 1.09003 * 109.47125 * 167.40175 * 14 13 12 39 39 H 0.96996 * 120.00321 * 0.02562 * 17 15 14 40 40 H 0.97000 * 119.99607 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.91977 * 265.97287 * 26 13 12 42 42 H 1.09007 * 110.08136 * 144.77755 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8931 0.0055 5 6 3.9351 -0.4059 -0.0009 6 6 5.3188 -0.8926 -0.0014 7 8 6.2425 -0.1004 -0.0011 8 7 5.5672 -2.2173 -0.0023 9 6 6.9491 -2.7034 -0.0089 10 1 7.5922 -2.0214 0.5474 11 6 7.4566 -2.8582 -1.4610 12 6 8.2901 -4.1629 -1.3996 13 7 7.5115 -5.0201 -0.4695 14 6 8.3513 -6.0875 0.0904 15 6 8.6288 -7.1184 -0.9733 16 8 8.1723 -6.9775 -2.0882 17 7 9.3842 -8.1969 -0.6857 18 6 9.6371 -9.1345 -1.6535 19 1 9.2306 -9.0090 -2.6462 20 6 10.4163 -10.2461 -1.3571 21 7 10.9113 -10.3984 -0.1494 22 14 10.7614 -11.5232 -2.6760 23 1 12.0016 -11.1579 -3.4063 24 1 10.9342 -12.8550 -2.0422 25 1 9.6226 -11.5720 -3.6278 26 6 7.0211 -4.1181 0.5951 27 16 2.4827 -1.4038 -0.0006 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 4.2433 1.7162 0.0114 32 1 4.8309 -2.8489 -0.0028 33 1 6.6206 -2.9668 -2.1522 34 1 8.0839 -2.0126 -1.7427 35 1 9.2846 -3.9655 -0.9996 36 1 8.3552 -4.6245 -2.3849 37 1 9.2927 -5.6635 0.4399 38 1 7.8323 -6.5579 0.9255 39 1 9.7490 -8.3097 0.2060 40 1 11.4550 -11.1746 0.0575 41 1 7.7127 -4.1275 1.4376 42 1 6.0306 -4.4319 0.9247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665525865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:38 Heat of formation + Delta-G solvation = -15.014891 kcal Electronic energy + Delta-G solvation = -25662.305887 eV Core-core repulsion = 21769.383445 eV Total energy + Delta-G solvation = -3892.922442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.61820 -39.81881 -38.75663 -37.49937 -34.61747 -33.82917 -32.80430 -31.43064 -30.96021 -29.37357 -28.31950 -26.54016 -24.81274 -24.18761 -22.53068 -21.29622 -20.79163 -19.94526 -19.22141 -18.86133 -17.88640 -17.21475 -16.66470 -16.00204 -15.74793 -15.51762 -15.27619 -14.87374 -14.60775 -14.52556 -14.38496 -13.94036 -13.79306 -13.78320 -13.15856 -13.06710 -12.92416 -12.61854 -12.39672 -12.07599 -11.97232 -11.78537 -11.55963 -11.49020 -11.14360 -10.93234 -10.80168 -10.52932 -10.39738 -10.22244 -10.12407 -9.96574 -9.50456 -9.42777 -9.26824 -8.51635 -8.04100 -7.95312 -6.42072 -3.82792 -0.19695 0.70199 1.11424 2.04791 2.75416 2.85328 3.17357 3.26043 3.31847 3.61041 3.89823 3.98398 4.23345 4.36874 4.46439 4.55533 4.73396 4.84804 4.87908 4.93279 4.96478 5.15439 5.25055 5.31456 5.31972 5.35007 5.59877 5.63326 5.65839 5.75730 5.79054 5.92280 6.07527 6.26170 6.27552 6.37493 7.02295 7.08857 7.14484 7.20708 7.54840 7.80147 8.05819 8.61572 9.18003 9.54218 10.06158 10.75732 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026564 B = 0.001872 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.819659 B =14956.087855 C =15472.148188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.060 3.940 3 N -0.481 5.481 4 C 0.123 3.877 5 C -0.295 4.295 6 C 0.598 3.402 7 O -0.526 6.526 8 N -0.712 5.712 9 C 0.137 3.863 10 H 0.099 0.901 11 C -0.133 4.133 12 C 0.041 3.959 13 N -0.490 5.490 14 C 0.036 3.964 15 C 0.445 3.555 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.027 3.973 27 S 0.170 5.830 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.189 0.811 32 H 0.401 0.599 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.057 0.943 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.278 18.905 5.194 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.215 4.215 3 N -0.196 5.196 4 C -0.035 4.035 5 C -0.419 4.419 6 C 0.383 3.617 7 O -0.404 6.404 8 N -0.363 5.363 9 C 0.032 3.968 10 H 0.117 0.883 11 C -0.172 4.172 12 C -0.086 4.086 13 N -0.214 5.214 14 C -0.096 4.096 15 C 0.230 3.770 16 O -0.460 6.460 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.102 4.102 27 S 0.426 5.574 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.206 0.794 32 H 0.236 0.764 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.737 18.524 4.259 25.997 hybrid contribution 1.442 -0.056 0.500 1.527 sum -16.294 18.468 4.758 25.084 Atomic orbital electron populations 1.20564 0.84561 1.04812 1.04413 1.27539 1.02355 0.91064 1.00538 1.66250 1.04807 1.31186 1.17352 1.22202 0.90735 0.95544 0.95014 1.25778 0.97977 0.97924 1.20261 1.16698 0.85968 0.82643 0.76407 1.90848 1.44248 1.55179 1.50087 1.46023 1.09263 1.06136 1.74903 1.21933 0.81964 0.95241 0.97687 0.88272 1.22950 1.00580 0.97844 0.95797 1.23289 0.94242 0.91444 0.99671 1.64496 1.35243 1.08869 1.12804 1.22086 0.96171 0.93742 0.97600 1.19673 0.83895 0.84083 0.89301 1.90508 1.54582 1.77819 1.23140 1.41858 1.45094 1.19512 1.13782 1.19691 1.29156 0.99756 0.94148 0.87931 1.25258 0.96852 0.98612 0.97274 1.69612 1.34953 1.30361 1.19456 0.85859 0.78918 0.79336 0.80190 1.20449 1.20945 1.19423 1.23153 1.01827 0.90712 0.94467 1.84020 0.96455 1.11236 1.65655 0.88972 0.88773 0.89564 0.79440 0.76399 0.90226 0.90508 0.93894 0.87987 0.92997 0.89299 0.77528 0.91903 0.92507 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.46 36.01 0.38 0.06 16 2 C 0.06 0.44 7.38 -13.29 -0.10 0.34 16 3 N -0.48 -4.66 10.51 -11.50 -0.12 -4.78 16 4 C 0.12 1.22 11.09 -18.85 -0.21 1.01 16 5 C -0.30 -2.93 6.49 -37.10 -0.24 -3.17 16 6 C 0.60 7.02 7.79 -12.85 -0.10 6.92 16 7 O -0.53 -7.76 16.52 5.20 0.09 -7.68 16 8 N -0.71 -7.40 5.05 -53.80 -0.27 -7.68 16 9 C 0.14 1.57 3.34 -66.57 -0.22 1.35 16 10 H 0.10 1.17 7.56 -51.93 -0.39 0.78 16 11 C -0.13 -1.69 6.78 -24.87 -0.17 -1.86 16 12 C 0.04 0.63 5.93 -1.90 -0.01 0.62 16 13 N -0.49 -7.75 4.91 -231.88 -1.14 -8.88 16 14 C 0.04 0.61 5.19 -4.97 -0.03 0.59 16 15 C 0.45 10.32 7.61 -10.98 -0.08 10.24 16 16 O -0.58 -15.34 14.64 5.55 0.08 -15.26 16 17 N -0.57 -14.15 5.29 -10.96 -0.06 -14.21 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 22 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.03 0.32 6.43 -2.76 -0.02 0.30 16 27 S 0.17 1.21 22.31 -107.50 -2.40 -1.19 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.19 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.40 3.51 7.54 -40.82 -0.31 3.21 16 33 H 0.08 1.05 8.06 -51.92 -0.42 0.63 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 36 H 0.10 1.86 7.10 -51.93 -0.37 1.49 16 37 H 0.05 0.81 7.83 -51.93 -0.41 0.41 16 38 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 39 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.06 0.61 7.77 -51.93 -0.40 0.21 16 42 H 0.08 0.88 7.65 -51.93 -0.40 0.49 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -33.70 370.21 -9.05 -42.75 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.47 Total: 10.58 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -1.04 Total: 8.50 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.86 Total: -59.21 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.17 Total: -22.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.40 Total: -1.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.70 -9.05 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665525865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.735 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds