Wall clock time and date at job start Tue Mar 31 2020 20:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29422 * 124.80280 * 2 1 4 4 C 1.30949 * 117.36212 * 179.72997 * 3 2 1 5 5 C 1.35664 * 114.18980 * 0.52633 * 4 3 2 6 6 C 1.46680 * 126.13041 * 179.78510 * 5 4 3 7 7 O 1.21683 * 120.00091 * 359.71355 * 6 5 4 8 8 N 1.34777 * 119.99703 * 179.71026 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72441 * 8 6 5 10 10 H 1.09004 * 110.27594 * 33.18831 * 9 8 6 11 11 C 1.54597 * 110.31136 * 270.99566 * 9 8 6 12 12 C 1.54942 * 102.92338 * 219.13014 * 11 9 8 13 13 N 1.48531 * 103.22581 * 37.41052 * 12 11 9 14 14 C 1.46901 * 110.99664 * 200.28327 * 13 12 11 15 15 C 1.50705 * 109.46966 * 287.39464 * 14 13 12 16 16 O 1.21290 * 120.00077 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99532 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99570 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00037 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00089 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99750 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47053 * 90.00141 * 22 20 18 24 24 H 1.48501 * 109.46853 * 210.00246 * 22 20 18 25 25 H 1.48499 * 109.47043 * 329.99969 * 22 20 18 26 26 C 1.47899 * 105.81979 * 320.79327 * 13 12 11 27 27 S 1.70953 * 124.80052 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47163 * 269.97608 * 1 2 3 29 29 H 1.08998 * 109.47147 * 29.97451 * 1 2 3 30 30 H 1.09000 * 109.47597 * 149.97931 * 1 2 3 31 31 H 1.07996 * 122.90654 * 180.34258 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.09011 * 110.72164 * 337.48340 * 11 9 8 34 34 H 1.08994 * 110.73050 * 100.76604 * 11 9 8 35 35 H 1.09000 * 110.66507 * 278.97443 * 12 11 9 36 36 H 1.09003 * 110.66802 * 155.84801 * 12 11 9 37 37 H 1.09001 * 109.47322 * 47.39516 * 14 13 12 38 38 H 1.09003 * 109.47125 * 167.40175 * 14 13 12 39 39 H 0.96996 * 120.00321 * 0.02562 * 17 15 14 40 40 H 0.97000 * 119.99607 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.91977 * 265.97287 * 26 13 12 42 42 H 1.09007 * 110.08136 * 144.77755 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8931 0.0055 5 6 3.9351 -0.4059 -0.0009 6 6 5.3188 -0.8926 -0.0014 7 8 6.2425 -0.1004 -0.0011 8 7 5.5672 -2.2173 -0.0023 9 6 6.9491 -2.7034 -0.0089 10 1 7.5922 -2.0214 0.5474 11 6 7.4566 -2.8582 -1.4610 12 6 8.2901 -4.1629 -1.3996 13 7 7.5115 -5.0201 -0.4695 14 6 8.3513 -6.0875 0.0904 15 6 8.6288 -7.1184 -0.9733 16 8 8.1723 -6.9775 -2.0882 17 7 9.3842 -8.1969 -0.6857 18 6 9.6371 -9.1345 -1.6535 19 1 9.2306 -9.0090 -2.6462 20 6 10.4163 -10.2461 -1.3571 21 7 10.9113 -10.3984 -0.1494 22 14 10.7614 -11.5232 -2.6760 23 1 12.0016 -11.1579 -3.4063 24 1 10.9342 -12.8550 -2.0422 25 1 9.6226 -11.5720 -3.6278 26 6 7.0211 -4.1181 0.5951 27 16 2.4827 -1.4038 -0.0006 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 4.2433 1.7162 0.0114 32 1 4.8309 -2.8489 -0.0028 33 1 6.6206 -2.9668 -2.1522 34 1 8.0839 -2.0126 -1.7427 35 1 9.2846 -3.9655 -0.9996 36 1 8.3552 -4.6245 -2.3849 37 1 9.2927 -5.6635 0.4399 38 1 7.8323 -6.5579 0.9255 39 1 9.7490 -8.3097 0.2060 40 1 11.4550 -11.1746 0.0575 41 1 7.7127 -4.1275 1.4376 42 1 6.0306 -4.4319 0.9247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665525865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:37 Heat of formation + Delta-G solvation = -41.661860 kcal Electronic energy + Delta-G solvation = -25663.461386 eV Core-core repulsion = 21769.383445 eV Total energy + Delta-G solvation = -3894.077941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.46443 -40.74533 -40.11109 -38.95395 -36.02129 -35.47211 -33.43257 -33.24701 -32.22893 -30.17099 -29.29061 -28.01333 -26.05045 -25.32999 -23.35106 -22.53363 -21.75932 -20.99645 -20.70000 -19.87171 -19.53894 -18.03056 -17.83392 -17.41260 -16.81736 -16.57606 -16.40658 -16.13936 -15.95802 -15.62170 -15.51272 -15.32124 -15.00094 -14.54365 -14.47696 -14.09141 -13.69711 -13.48695 -13.37535 -13.32559 -13.23716 -12.99877 -12.84082 -12.71272 -12.61237 -12.39899 -12.21487 -12.11452 -11.91270 -11.46926 -11.42326 -10.80530 -10.65524 -10.38454 -10.19679 -9.98696 -9.92918 -9.34256 -8.45105 -5.93280 -0.85841 0.09650 0.48065 1.31760 1.38522 1.42235 1.54711 1.89320 2.03307 2.08429 2.29543 2.79751 3.08128 3.21757 3.34336 3.49397 3.71322 3.72543 3.96125 4.08133 4.18514 4.25150 4.25751 4.37391 4.43752 4.54359 4.60656 4.66702 4.67185 4.70661 4.85615 4.92112 5.00725 5.09433 5.15925 5.33167 5.42507 5.82470 5.90091 6.07964 6.26506 6.53379 6.62945 6.93983 7.15292 7.59263 8.15456 8.72297 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026564 B = 0.001872 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.819659 B =14956.087855 C =15472.148188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.062 3.938 3 N -0.509 5.509 4 C 0.120 3.880 5 C -0.324 4.324 6 C 0.600 3.400 7 O -0.563 6.563 8 N -0.703 5.703 9 C 0.144 3.856 10 H 0.100 0.900 11 C -0.124 4.124 12 C 0.042 3.958 13 N -0.510 5.510 14 C 0.048 3.952 15 C 0.442 3.558 16 O -0.616 6.616 17 N -0.576 5.576 18 C -0.331 4.331 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.273 1.273 26 C 0.032 3.968 27 S 0.217 5.783 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.186 0.814 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.077 0.923 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.736 18.731 6.341 27.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.212 4.212 3 N -0.224 5.224 4 C -0.039 4.039 5 C -0.448 4.448 6 C 0.386 3.614 7 O -0.443 6.443 8 N -0.354 5.354 9 C 0.039 3.961 10 H 0.118 0.882 11 C -0.163 4.163 12 C -0.086 4.086 13 N -0.235 5.235 14 C -0.083 4.083 15 C 0.230 3.770 16 O -0.502 6.502 17 N -0.214 5.214 18 C -0.460 4.460 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.096 4.096 27 S 0.474 5.526 28 H 0.128 0.872 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.203 0.797 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.220 18.334 5.434 27.112 hybrid contribution 1.778 0.038 0.131 1.784 sum -17.442 18.372 5.565 25.937 Atomic orbital electron populations 1.20804 0.81962 1.06026 1.05836 1.28238 1.03890 0.90804 0.98222 1.66315 1.04717 1.32353 1.19034 1.22279 0.91184 0.95752 0.94680 1.25641 0.98273 0.98722 1.22158 1.16898 0.86381 0.82555 0.75535 1.90822 1.45582 1.56037 1.51888 1.45910 1.09172 1.06006 1.74357 1.21790 0.82513 0.95292 0.96498 0.88152 1.22847 1.00049 0.96590 0.96805 1.23157 0.95212 0.92241 0.97962 1.64414 1.35003 1.09652 1.14422 1.21957 0.97936 0.92708 0.95736 1.20770 0.81988 0.84192 0.90088 1.90485 1.55629 1.78661 1.25384 1.41927 1.45942 1.19955 1.13528 1.19636 1.30752 1.01562 0.94077 0.90406 1.26010 0.96096 0.99861 0.99373 1.69670 1.34960 1.30999 1.20548 0.84949 0.78562 0.77272 0.77691 1.19789 1.19564 1.19822 1.23202 1.03025 0.89651 0.93675 1.83793 0.94287 1.09858 1.64683 0.87242 0.88450 0.87434 0.79739 0.75306 0.90884 0.90052 0.93242 0.91747 0.90900 0.86745 0.77022 0.91379 0.90508 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.46 71.24 0.75 0.33 16 2 C 0.06 0.80 7.38 88.46 0.65 1.45 16 3 N -0.51 -9.40 10.51 -190.30 -2.00 -11.40 16 4 C 0.12 2.36 11.09 84.23 0.93 3.30 16 5 C -0.32 -6.18 6.49 23.88 0.15 -6.03 16 6 C 0.60 13.70 7.79 86.45 0.67 14.37 16 7 O -0.56 -16.64 16.52 -4.29 -0.07 -16.71 16 8 N -0.70 -13.58 5.05 -442.34 -2.23 -15.82 16 9 C 0.14 3.08 3.34 45.87 0.15 3.23 16 10 H 0.10 2.21 7.56 -2.39 -0.02 2.19 16 11 C -0.12 -3.10 6.78 31.80 0.22 -2.88 16 12 C 0.04 1.30 5.93 86.65 0.51 1.81 16 13 N -0.51 -15.45 4.91 -887.54 -4.35 -19.81 16 14 C 0.05 1.58 5.19 85.56 0.44 2.02 16 15 C 0.44 20.67 7.61 87.66 0.67 21.33 16 16 O -0.62 -33.68 14.64 -3.06 -0.04 -33.72 16 17 N -0.58 -29.16 5.29 -306.97 -1.62 -30.79 16 18 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 19 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 20 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 21 N -0.92 -49.37 13.05 21.66 0.28 -49.08 16 22 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.03 0.68 6.43 86.45 0.56 1.23 16 27 S 0.22 2.64 22.31 -56.49 -1.26 1.38 16 28 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.08 8.14 -2.39 -0.02 0.07 16 31 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.41 6.34 7.54 -92.71 -0.70 5.64 16 33 H 0.07 1.92 8.06 -2.38 -0.02 1.90 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.43 7.81 -2.39 -0.02 1.41 16 36 H 0.06 2.46 7.10 -2.39 -0.02 2.44 16 37 H 0.07 2.12 7.83 -2.39 -0.02 2.10 16 38 H 0.11 3.20 8.08 -2.39 -0.02 3.18 16 39 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 40 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.08 1.37 7.77 -2.39 -0.02 1.35 16 42 H 0.10 1.79 7.65 -2.38 -0.02 1.77 16 Total: -1.00 -74.49 370.21 -2.64 -77.13 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.35 Total: 31.90 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 6.99 Total: 22.06 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -9.93 Total: -126.90 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -0.12 Total: -50.44 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.26 Total: 1.38 kcal Total: -74.49 -2.64 -77.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665525865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.464 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds