Wall clock time and date at job start Tue Mar 31 2020 20:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35006 * 127.27244 * 2 1 4 4 C 1.39479 * 111.68480 * 179.97438 * 3 2 1 5 5 C 1.47696 * 122.10664 * 179.97438 * 4 3 2 6 6 O 1.21574 * 119.99461 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00105 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99614 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.46908 * 180.02562 * 8 7 5 10 10 C 1.30998 * 120.00172 * 127.15413 * 9 8 7 11 11 C 1.50706 * 119.99851 * 7.56082 * 10 9 8 12 12 N 1.46898 * 109.46940 * 127.00736 * 11 10 9 13 13 C 1.46903 * 110.99702 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47189 * 179.97438 * 13 12 11 15 15 O 1.21299 * 120.00065 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00303 * 180.02562 * 14 13 12 17 17 C 1.37103 * 120.00147 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99651 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00104 * 179.97438 * 17 16 14 20 20 N 1.31400 * 120.00367 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99692 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47127 * 89.99966 * 21 19 17 23 23 H 1.48503 * 109.46765 * 209.99862 * 21 19 17 24 24 H 1.48498 * 109.47187 * 329.99847 * 21 19 17 25 25 N 1.30609 * 115.79210 * 0.24626 * 4 3 2 26 26 S 1.56143 * 109.79913 * 359.61332 * 25 4 3 27 27 H 1.09001 * 109.47345 * 90.00377 * 1 2 3 28 28 H 1.09003 * 109.47162 * 209.99868 * 1 2 3 29 29 H 1.08996 * 109.47234 * 330.00238 * 1 2 3 30 30 H 1.07998 * 124.15635 * 359.97438 * 3 2 1 31 31 H 0.96999 * 119.99946 * 0.02562 * 7 5 4 32 32 H 1.08993 * 109.47453 * 59.99994 * 8 7 5 33 33 H 1.09000 * 109.47088 * 299.99931 * 8 7 5 34 34 H 1.08002 * 119.99826 * 307.15542 * 9 8 7 35 35 H 1.08003 * 120.00422 * 187.55799 * 10 9 8 36 36 H 1.09005 * 109.46806 * 247.00121 * 11 10 9 37 37 H 1.08992 * 109.47230 * 7.00354 * 11 10 9 38 38 H 1.00898 * 111.00541 * 56.04761 * 12 11 10 39 39 H 1.08997 * 109.47502 * 299.99466 * 13 12 11 40 40 H 1.08998 * 109.47030 * 59.99795 * 13 12 11 41 41 H 0.96994 * 120.00101 * 0.02562 * 16 14 13 42 42 H 0.97001 * 120.00858 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0743 0.0000 4 6 3.6681 0.6995 0.0006 5 6 4.7604 1.6937 0.0001 6 8 4.5012 2.8814 -0.0012 7 7 6.0444 1.2840 0.0013 8 6 7.1278 2.2702 0.0014 9 6 8.4557 1.5576 0.0021 10 6 9.3572 1.8513 -0.9018 11 6 9.1381 3.0149 -1.8342 12 7 10.3025 3.9090 -1.7834 13 6 10.1242 5.0571 -2.6824 14 6 11.3354 5.9501 -2.6031 15 8 12.2569 5.6586 -1.8701 16 7 11.3949 7.0727 -3.3465 17 6 12.4972 7.8849 -3.2747 18 1 13.3179 7.6249 -2.6226 19 6 12.5587 9.0420 -4.0415 20 7 13.6153 9.8202 -3.9731 21 14 11.1393 9.4913 -5.1699 22 1 10.1647 10.3315 -4.4287 23 1 11.6565 10.2473 -6.3388 24 1 10.4686 8.2522 -5.6390 25 7 3.8995 -0.5859 -0.0040 26 16 2.5473 -1.3667 0.0008 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.9807 2.0981 -0.0004 31 1 6.2512 0.3363 0.0020 32 1 7.0500 2.8953 0.8909 33 1 7.0512 2.8942 -0.8890 34 1 8.6641 0.8047 0.7478 35 1 10.2575 1.2597 -0.9789 36 1 9.0076 2.6457 -2.8515 37 1 8.2462 3.5620 -1.5291 38 1 11.1519 3.4093 -1.9998 39 1 10.0008 4.7018 -3.7055 40 1 9.2390 5.6185 -2.3835 41 1 10.6580 7.3061 -3.9324 42 1 13.6585 10.6277 -4.5087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668798823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:07 Heat of formation + Delta-G solvation = -29.378158 kcal Electronic energy + Delta-G solvation = -24595.319243 eV Core-core repulsion = 20701.773964 eV Total energy + Delta-G solvation = -3893.545280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54346 -40.33861 -39.56073 -38.07728 -36.35159 -35.83950 -34.43421 -33.81385 -33.61672 -29.63992 -29.19006 -28.05244 -26.50691 -25.40699 -24.40705 -22.05480 -21.36064 -21.23623 -20.48379 -19.87701 -19.23822 -18.31512 -17.72817 -17.33607 -16.99315 -16.86776 -16.63552 -16.22596 -15.88597 -15.51015 -15.32551 -15.17242 -14.95776 -14.61795 -14.46664 -14.27742 -14.02721 -13.97831 -13.79394 -13.50934 -13.47135 -13.28060 -13.01704 -12.76516 -12.42349 -12.36145 -11.98718 -11.89593 -11.72878 -11.53084 -11.23882 -10.50988 -10.49017 -10.46661 -10.26357 -10.10501 -9.74503 -9.29341 -8.42492 -6.03595 -0.50200 0.42293 0.65625 0.74947 0.99560 1.29476 1.35117 1.43591 1.93198 2.08356 2.20301 2.22026 2.77171 3.13639 3.50912 3.56986 3.69098 3.82077 4.00792 4.11659 4.17423 4.23898 4.28265 4.38383 4.44610 4.49576 4.63381 4.69317 4.72515 4.76709 4.89761 4.92290 5.16320 5.21500 5.30515 5.50353 5.54999 5.75276 5.88210 6.00381 6.35283 6.37619 6.58180 6.86237 6.99230 7.37823 7.93998 8.75083 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020130 B = 0.001596 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.612716 B =17543.618448 C =18592.860803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.238 4.238 3 C -0.165 4.165 4 C 0.033 3.967 5 C 0.584 3.416 6 O -0.566 6.566 7 N -0.696 5.696 8 C 0.139 3.861 9 C -0.167 4.167 10 C -0.122 4.122 11 C 0.072 3.928 12 N -0.682 5.682 13 C 0.060 3.940 14 C 0.448 3.552 15 O -0.614 6.614 16 N -0.590 5.590 17 C -0.331 4.331 18 H 0.056 0.944 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.232 1.232 25 N -0.549 5.549 26 S 0.533 5.467 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.417 0.583 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.347 0.653 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.390 0.610 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.577 -28.041 4.638 43.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.368 4.368 3 C -0.196 4.196 4 C -0.139 4.139 5 C 0.366 3.634 6 O -0.445 6.445 7 N -0.347 5.347 8 C 0.016 3.984 9 C -0.186 4.186 10 C -0.141 4.141 11 C -0.056 4.056 12 N -0.315 5.315 13 C -0.072 4.072 14 C 0.236 3.764 15 O -0.498 6.498 16 N -0.232 5.232 17 C -0.460 4.460 18 H 0.074 0.926 19 C -0.212 4.212 20 N -0.574 5.574 21 Si 0.784 3.216 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.155 1.155 25 N -0.386 5.386 26 S 0.688 5.312 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.183 0.817 31 H 0.254 0.746 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.166 0.834 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.225 0.775 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -31.455 -28.852 5.616 43.052 hybrid contribution 0.149 2.107 -1.294 2.477 sum -31.307 -26.746 4.322 41.402 Atomic orbital electron populations 1.20429 0.83633 1.05105 1.04586 1.26533 1.04980 0.99445 1.05892 1.21318 0.90230 1.02702 1.05395 1.20847 0.94808 0.89272 1.08992 1.17610 0.82669 0.86799 0.76312 1.90804 1.84119 1.17700 1.51872 1.45752 1.04341 1.11618 1.73030 1.20541 0.84174 0.90825 1.02819 1.22723 0.94146 1.02661 0.99114 1.22855 0.99972 0.96100 0.95204 1.21318 0.93685 0.92158 0.98421 1.60085 1.05610 1.10110 1.55661 1.21649 0.95718 0.92713 0.97135 1.20944 0.90044 0.83124 0.82270 1.90543 1.41819 1.74585 1.42874 1.42029 1.18438 1.21928 1.40793 1.19027 0.97427 1.03903 1.25674 0.92610 1.26103 1.00808 0.94959 0.99348 1.69794 1.30884 1.14682 1.41993 0.85373 0.77881 0.80243 0.78075 1.18266 1.19838 1.15493 1.71982 1.31999 1.10347 1.24295 1.80240 0.85576 1.10463 1.54872 0.88737 0.88493 0.89679 0.81656 0.74554 0.91296 0.90431 0.84338 0.85331 0.92838 0.89585 0.83386 0.90298 0.87082 0.77463 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.46 71.24 0.75 0.55 16 2 C -0.24 -2.20 6.58 24.94 0.16 -2.04 16 3 C -0.16 -2.59 9.93 21.83 0.22 -2.37 16 4 C 0.03 0.64 6.66 42.13 0.28 0.92 16 5 C 0.58 13.70 7.81 86.74 0.68 14.37 16 6 O -0.57 -17.11 16.66 -3.95 -0.07 -17.18 16 7 N -0.70 -13.31 5.54 -469.86 -2.60 -15.91 16 8 C 0.14 2.76 5.76 85.63 0.49 3.25 16 9 C -0.17 -2.81 9.63 25.65 0.25 -2.56 16 10 C -0.12 -2.28 9.77 25.65 0.25 -2.03 16 11 C 0.07 1.57 5.77 85.56 0.49 2.06 16 12 N -0.68 -20.59 6.11 -521.99 -3.19 -23.78 16 13 C 0.06 1.91 6.17 85.56 0.53 2.43 16 14 C 0.45 20.80 7.82 87.66 0.69 21.48 16 15 O -0.61 -34.80 15.78 -3.09 -0.05 -34.85 16 16 N -0.59 -28.53 5.09 -306.98 -1.56 -30.10 16 17 C -0.33 -19.79 10.16 84.04 0.85 -18.94 16 18 H 0.06 3.96 7.39 -2.91 -0.02 3.93 16 19 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 20 N -0.93 -56.95 13.96 21.66 0.30 -56.64 16 21 Si 0.96 39.53 27.74 68.60 1.90 41.43 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.23 -8.01 6.52 99.48 0.65 -7.36 16 25 N -0.55 -8.64 10.71 -75.30 -0.81 -9.45 16 26 S 0.53 4.47 23.20 -56.49 -1.31 3.16 16 27 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.10 -0.13 8.14 -2.39 -0.02 -0.14 16 29 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.17 2.67 7.99 -2.91 -0.02 2.65 16 31 H 0.42 6.46 7.93 -92.71 -0.73 5.72 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.67 5.30 -2.39 -0.01 1.66 16 34 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.09 1.89 5.29 -2.39 -0.01 1.88 16 38 H 0.35 10.87 8.42 -89.70 -0.76 10.12 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.39 15.63 5.76 -92.71 -0.53 15.10 16 42 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -83.89 377.04 -2.27 -86.16 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: -0.99 Total: 40.32 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 6.10 Total: 16.84 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -7.86 Total: -135.89 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.11 Total: -52.03 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.90 Total: 41.43 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.31 Total: 3.16 kcal Total: -83.89 -2.27 -86.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668798823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.779 kcal (2) G-P(sol) polarization free energy of solvation -83.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds