Wall clock time and date at job start Tue Mar 31 2020 20:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 110.35300 * 2 1 4 4 C 1.34783 * 119.99843 * 57.85386 * 3 2 1 5 5 O 1.21622 * 119.99945 * 0.02562 * 4 3 2 6 6 C 1.47255 * 119.99780 * 180.02562 * 4 3 2 7 7 N 1.30555 * 125.54225 * 180.02562 * 6 4 3 8 8 C 1.30703 * 115.91223 * 179.97438 * 7 6 4 9 9 C 1.34235 * 115.77719 * 0.02562 * 8 7 6 10 10 S 1.71072 * 109.09510 * 359.72762 * 9 8 7 11 11 C 1.54601 * 110.30588 * 122.13649 * 2 1 3 12 12 C 1.54938 * 102.91726 * 140.87380 * 11 2 1 13 13 N 1.48528 * 103.23097 * 322.58954 * 12 11 2 14 14 C 1.46903 * 111.00089 * 159.72013 * 13 12 11 15 15 C 1.50694 * 109.47066 * 52.60302 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99735 * 179.72439 * 17 15 14 19 19 H 1.07998 * 120.00618 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99464 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47319 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00520 * 22 20 18 25 25 H 1.48501 * 109.47099 * 240.00173 * 22 20 18 26 26 C 1.47897 * 105.82095 * 39.20531 * 13 12 11 27 27 H 1.08997 * 109.46915 * 182.14109 * 1 2 3 28 28 H 1.09000 * 109.47580 * 302.14594 * 1 2 3 29 29 H 1.09007 * 109.46744 * 62.14711 * 1 2 3 30 30 H 0.96995 * 120.00307 * 237.85531 * 3 2 1 31 31 H 1.07994 * 122.11319 * 180.02562 * 8 7 6 32 32 H 1.08000 * 125.45125 * 180.02562 * 9 8 7 33 33 H 1.08993 * 110.73005 * 259.23243 * 11 2 1 34 34 H 1.09000 * 110.72025 * 22.34691 * 11 2 1 35 35 H 1.09006 * 110.66744 * 204.15056 * 12 11 2 36 36 H 1.09004 * 110.66538 * 81.02669 * 12 11 2 37 37 H 1.08998 * 109.46809 * 292.60403 * 14 13 12 38 38 H 1.09002 * 109.47056 * 172.60144 * 14 13 12 39 39 H 0.97000 * 119.99339 * 0.02562 * 17 15 14 40 40 H 0.97000 * 119.99610 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.91818 * 94.02307 * 26 13 12 42 42 H 1.09000 * 109.92045 * 215.12021 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3736 0.0000 4 6 1.6916 2.2214 0.9883 5 8 0.9550 1.8460 1.8804 6 6 2.2033 3.6022 0.9880 7 7 1.9377 4.5102 1.8877 8 6 2.4948 5.6779 1.7025 9 6 3.2670 5.7896 0.6102 10 16 3.2789 4.2950 -0.2220 11 6 2.0665 -0.7713 1.2278 12 6 3.2854 -1.5347 0.6517 13 7 2.8313 -1.9236 -0.7080 14 6 3.9752 -2.2262 -1.5786 15 6 4.8664 -3.2369 -0.9039 16 8 4.5774 -3.6628 0.1945 17 7 5.9853 -3.6668 -1.5204 18 6 6.7989 -4.5820 -0.9041 19 1 6.5433 -4.9588 0.0752 20 6 7.9521 -5.0255 -1.5400 21 7 8.2629 -4.5674 -2.7317 22 14 9.0605 -6.2731 -0.7006 23 1 8.4925 -6.6270 0.6251 24 1 9.1566 -7.4939 -1.5405 25 1 10.4139 -5.6896 -0.5188 26 6 2.0646 -0.7684 -1.2227 27 1 -0.3633 -1.0269 0.0384 28 1 -0.3634 0.5468 0.8701 29 1 -0.3633 0.4802 -0.9087 30 1 2.6272 1.6729 -0.7112 31 1 2.3435 6.5009 2.3851 32 1 3.7998 6.6791 0.3079 33 1 2.3790 -0.0806 2.0109 34 1 1.3160 -1.4660 1.6049 35 1 3.5046 -2.4182 1.2514 36 1 4.1563 -0.8817 0.5943 37 1 4.5395 -1.3130 -1.7676 38 1 3.6150 -2.6330 -2.5236 39 1 6.2169 -3.3253 -2.3982 40 1 9.0681 -4.8768 -3.1754 41 1 2.7163 -0.1226 -1.8112 42 1 1.2348 -1.1175 -1.8374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671679560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:18 Heat of formation + Delta-G solvation = -0.195169 kcal Electronic energy + Delta-G solvation = -26659.885888 eV Core-core repulsion = 22767.606078 eV Total energy + Delta-G solvation = -3892.279810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.84435 -39.91799 -38.74784 -37.50518 -34.73574 -33.84600 -32.12202 -31.30155 -30.64582 -29.57746 -27.55681 -26.76117 -25.32862 -23.94311 -22.79711 -21.43296 -20.10210 -19.89762 -19.29239 -19.03438 -17.90791 -17.21658 -16.33870 -15.97135 -15.78344 -15.74107 -15.21245 -14.78990 -14.55335 -14.38411 -14.19513 -13.93277 -13.83173 -13.51817 -13.40229 -13.10429 -12.56055 -12.40567 -12.12758 -12.04330 -11.82336 -11.57391 -11.32506 -11.21127 -11.00823 -10.84383 -10.81438 -10.54294 -10.35706 -10.25999 -10.16019 -9.91479 -9.55061 -9.46302 -9.27087 -8.42683 -8.06277 -7.94718 -6.45672 -3.86335 -0.18901 0.71678 1.14545 1.98894 2.48131 2.90060 3.13871 3.25069 3.32227 3.84862 3.95703 4.07100 4.28481 4.36003 4.55954 4.63362 4.72169 4.86551 4.87831 5.05627 5.21152 5.31439 5.47333 5.52226 5.53987 5.58768 5.66785 5.78285 5.85853 5.93489 6.05008 6.19117 6.20722 6.26352 6.38797 6.67177 6.93629 7.16027 7.19919 7.27206 7.52299 7.79780 8.02385 8.57429 9.14416 9.49519 10.01065 10.72049 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.002474 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.088018 B =11314.876162 C =12252.351760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 N -0.710 5.710 4 C 0.596 3.404 5 O -0.490 6.490 6 C -0.004 4.004 7 N -0.399 5.399 8 C 0.028 3.972 9 C -0.262 4.262 10 S 0.181 5.819 11 C -0.126 4.126 12 C 0.037 3.963 13 N -0.490 5.490 14 C 0.036 3.964 15 C 0.441 3.559 16 O -0.579 6.579 17 N -0.561 5.561 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.034 3.966 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.396 0.604 31 H 0.181 0.819 32 H 0.186 0.814 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.035 0.965 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.047 0.953 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.572 20.535 -0.609 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.081 3.919 3 N -0.364 5.364 4 C 0.377 3.623 5 O -0.363 6.363 6 C -0.280 4.280 7 N -0.115 5.115 8 C -0.129 4.129 9 C -0.403 4.403 10 S 0.434 5.566 11 C -0.164 4.164 12 C -0.090 4.090 13 N -0.215 5.215 14 C -0.096 4.096 15 C 0.227 3.773 16 O -0.463 6.463 17 N -0.198 5.198 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.094 4.094 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.231 0.769 31 H 0.198 0.802 32 H 0.203 0.797 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.333 18.874 0.199 22.016 hybrid contribution 1.714 1.596 -0.239 2.354 sum -9.619 20.470 -0.039 22.617 Atomic orbital electron populations 1.22195 0.92800 1.03404 1.03073 1.21306 0.94853 0.78994 0.96793 1.46097 1.51156 1.12463 1.26679 1.16644 0.81062 0.81856 0.82701 1.90838 1.34478 1.75606 1.35342 1.27669 1.04072 0.99691 0.96569 1.66632 1.20186 1.00182 1.24544 1.21905 0.97308 0.95459 0.98216 1.26813 1.07665 1.04336 1.01443 1.83946 1.42394 1.03370 1.26889 1.22971 0.98721 0.98564 0.96188 1.23539 0.94429 1.00462 0.90546 1.64688 1.20752 1.33524 1.02508 1.22127 0.91745 0.98429 0.97305 1.19679 0.83463 0.86524 0.87636 1.90451 1.73794 1.60901 1.21200 1.41854 1.20088 1.38765 1.19071 1.19753 1.01989 1.17995 1.03026 0.87802 1.25267 0.97994 0.98773 0.95895 1.69616 1.26641 1.44271 1.13737 0.85805 0.79416 0.79781 0.79390 1.19177 1.20704 1.20777 1.23266 0.99095 0.91856 0.95231 0.90671 0.90193 0.92655 0.76870 0.80162 0.79666 0.90611 0.89549 0.86064 0.94710 0.93396 0.89044 0.77473 0.91897 0.93437 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.15 37.16 0.30 -1.41 16 2 C 0.17 1.95 0.94 -130.46 -0.12 1.82 16 3 N -0.71 -7.49 5.15 -47.46 -0.24 -7.74 16 4 C 0.60 7.51 7.00 -12.59 -0.09 7.42 16 5 O -0.49 -7.74 13.95 5.26 0.07 -7.67 16 6 C 0.00 -0.04 7.46 -14.43 -0.11 -0.15 16 7 N -0.40 -4.79 10.59 -11.51 -0.12 -4.91 16 8 C 0.03 0.23 11.24 -19.44 -0.22 0.01 16 9 C -0.26 -1.66 11.09 29.32 0.33 -1.33 16 10 S 0.18 1.30 22.31 -107.50 -2.40 -1.10 16 11 C -0.13 -1.78 5.85 -24.87 -0.15 -1.93 16 12 C 0.04 0.62 5.30 -1.90 -0.01 0.61 16 13 N -0.49 -7.81 5.26 -231.90 -1.22 -9.03 16 14 C 0.04 0.60 5.52 -4.98 -0.03 0.58 16 15 C 0.44 10.06 7.49 -10.98 -0.08 9.97 16 16 O -0.58 -14.98 13.09 5.54 0.07 -14.91 16 17 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 18 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 22 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.03 0.40 6.15 -2.76 -0.02 0.39 16 27 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 28 H 0.08 1.02 6.03 -51.93 -0.31 0.70 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.40 3.27 7.23 -40.82 -0.30 2.98 16 31 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.19 0.59 8.06 -52.49 -0.42 0.16 16 33 H 0.08 1.13 6.81 -51.93 -0.35 0.78 16 34 H 0.09 1.23 7.84 -51.93 -0.41 0.82 16 35 H 0.12 2.45 5.97 -51.93 -0.31 2.14 16 36 H 0.03 0.59 8.02 -51.93 -0.42 0.17 16 37 H 0.05 0.73 7.81 -51.93 -0.41 0.32 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 40 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 41 H 0.05 0.48 6.89 -51.93 -0.36 0.12 16 42 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -33.20 359.11 -8.42 -41.62 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.20 Total: 11.63 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.43 Total: 8.19 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.92 Total: -58.92 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.15 Total: -22.58 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.40 Total: -1.10 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.20 -8.42 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671679560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.429 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds