Wall clock time and date at job start Tue Mar 31 2020 20:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 110.35300 * 2 1 4 4 C 1.34783 * 119.99843 * 57.85386 * 3 2 1 5 5 O 1.21622 * 119.99945 * 0.02562 * 4 3 2 6 6 C 1.47255 * 119.99780 * 180.02562 * 4 3 2 7 7 N 1.30555 * 125.54225 * 180.02562 * 6 4 3 8 8 C 1.30703 * 115.91223 * 179.97438 * 7 6 4 9 9 C 1.34235 * 115.77719 * 0.02562 * 8 7 6 10 10 S 1.71072 * 109.09510 * 359.72762 * 9 8 7 11 11 C 1.54601 * 110.30588 * 122.13649 * 2 1 3 12 12 C 1.54938 * 102.91726 * 140.87380 * 11 2 1 13 13 N 1.48528 * 103.23097 * 322.58954 * 12 11 2 14 14 C 1.46903 * 111.00089 * 159.72013 * 13 12 11 15 15 C 1.50694 * 109.47066 * 52.60302 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99735 * 179.72439 * 17 15 14 19 19 H 1.07998 * 120.00618 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99464 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47319 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00520 * 22 20 18 25 25 H 1.48501 * 109.47099 * 240.00173 * 22 20 18 26 26 C 1.47897 * 105.82095 * 39.20531 * 13 12 11 27 27 H 1.08997 * 109.46915 * 182.14109 * 1 2 3 28 28 H 1.09000 * 109.47580 * 302.14594 * 1 2 3 29 29 H 1.09007 * 109.46744 * 62.14711 * 1 2 3 30 30 H 0.96995 * 120.00307 * 237.85531 * 3 2 1 31 31 H 1.07994 * 122.11319 * 180.02562 * 8 7 6 32 32 H 1.08000 * 125.45125 * 180.02562 * 9 8 7 33 33 H 1.08993 * 110.73005 * 259.23243 * 11 2 1 34 34 H 1.09000 * 110.72025 * 22.34691 * 11 2 1 35 35 H 1.09006 * 110.66744 * 204.15056 * 12 11 2 36 36 H 1.09004 * 110.66538 * 81.02669 * 12 11 2 37 37 H 1.08998 * 109.46809 * 292.60403 * 14 13 12 38 38 H 1.09002 * 109.47056 * 172.60144 * 14 13 12 39 39 H 0.97000 * 119.99339 * 0.02562 * 17 15 14 40 40 H 0.97000 * 119.99610 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.91818 * 94.02307 * 26 13 12 42 42 H 1.09000 * 109.92045 * 215.12021 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3736 0.0000 4 6 1.6916 2.2214 0.9883 5 8 0.9550 1.8460 1.8804 6 6 2.2033 3.6022 0.9880 7 7 1.9377 4.5102 1.8877 8 6 2.4948 5.6779 1.7025 9 6 3.2670 5.7896 0.6102 10 16 3.2789 4.2950 -0.2220 11 6 2.0665 -0.7713 1.2278 12 6 3.2854 -1.5347 0.6517 13 7 2.8313 -1.9236 -0.7080 14 6 3.9752 -2.2262 -1.5786 15 6 4.8664 -3.2369 -0.9039 16 8 4.5774 -3.6628 0.1945 17 7 5.9853 -3.6668 -1.5204 18 6 6.7989 -4.5820 -0.9041 19 1 6.5433 -4.9588 0.0752 20 6 7.9521 -5.0255 -1.5400 21 7 8.2629 -4.5674 -2.7317 22 14 9.0605 -6.2731 -0.7006 23 1 8.4925 -6.6270 0.6251 24 1 9.1566 -7.4939 -1.5405 25 1 10.4139 -5.6896 -0.5188 26 6 2.0646 -0.7684 -1.2227 27 1 -0.3633 -1.0269 0.0384 28 1 -0.3634 0.5468 0.8701 29 1 -0.3633 0.4802 -0.9087 30 1 2.6272 1.6729 -0.7112 31 1 2.3435 6.5009 2.3851 32 1 3.7998 6.6791 0.3079 33 1 2.3790 -0.0806 2.0109 34 1 1.3160 -1.4660 1.6049 35 1 3.5046 -2.4182 1.2514 36 1 4.1563 -0.8817 0.5943 37 1 4.5395 -1.3130 -1.7676 38 1 3.6150 -2.6330 -2.5236 39 1 6.2169 -3.3253 -2.3982 40 1 9.0681 -4.8768 -3.1754 41 1 2.7163 -0.1226 -1.8112 42 1 1.2348 -1.1175 -1.8374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671679560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:17 Heat of formation + Delta-G solvation = -27.648268 kcal Electronic energy + Delta-G solvation = -26661.076344 eV Core-core repulsion = 22767.606078 eV Total energy + Delta-G solvation = -3893.470266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79594 -40.79507 -40.13492 -38.87074 -36.15785 -35.49869 -33.38507 -33.01863 -31.42038 -30.68431 -28.89718 -27.51061 -26.83727 -25.38536 -23.66094 -22.65116 -21.15155 -20.85720 -20.72725 -19.89962 -19.76180 -18.10018 -17.69543 -17.20966 -16.83544 -16.58104 -16.46671 -16.23468 -15.98476 -15.74075 -15.40795 -15.03519 -14.81274 -14.74878 -14.39709 -14.20407 -14.04227 -13.64799 -13.44438 -13.21788 -12.98677 -12.93174 -12.61843 -12.44825 -12.39095 -12.33055 -12.11439 -12.00189 -11.97841 -11.46966 -11.39246 -10.77564 -10.72240 -10.39020 -10.13775 -9.99347 -9.94073 -9.34426 -8.46319 -5.94004 -0.84783 0.08836 0.56549 1.27130 1.36314 1.42216 1.55635 1.64752 2.05950 2.10098 2.29146 2.86221 3.19356 3.21949 3.38837 3.49336 3.71599 3.84637 3.90269 4.24009 4.26152 4.28952 4.32671 4.32955 4.48452 4.50334 4.61490 4.71493 4.81523 4.88248 4.96381 4.99483 5.08487 5.25162 5.31875 5.37805 5.43322 5.82598 5.93426 6.09773 6.18776 6.58685 6.62197 6.93756 7.14706 7.57387 8.13940 8.71275 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.002474 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.088018 B =11314.876162 C =12252.351760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.172 3.828 3 N -0.698 5.698 4 C 0.595 3.405 5 O -0.535 6.535 6 C -0.052 4.052 7 N -0.438 5.438 8 C 0.006 3.994 9 C -0.242 4.242 10 S 0.244 5.756 11 C -0.118 4.118 12 C 0.044 3.956 13 N -0.506 5.506 14 C 0.047 3.953 15 C 0.438 3.562 16 O -0.615 6.615 17 N -0.572 5.572 18 C -0.329 4.329 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.989 3.011 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.038 3.962 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.409 0.591 31 H 0.202 0.798 32 H 0.224 0.776 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.075 0.925 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.038 22.591 -2.968 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.086 3.914 3 N -0.353 5.353 4 C 0.378 3.622 5 O -0.411 6.411 6 C -0.326 4.326 7 N -0.156 5.156 8 C -0.151 4.151 9 C -0.383 4.383 10 S 0.497 5.503 11 C -0.158 4.158 12 C -0.083 4.083 13 N -0.231 5.231 14 C -0.084 4.084 15 C 0.225 3.775 16 O -0.502 6.502 17 N -0.209 5.209 18 C -0.459 4.459 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.813 3.187 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.090 4.090 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.247 0.753 31 H 0.219 0.781 32 H 0.241 0.759 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.793 20.943 -2.211 23.664 hybrid contribution 1.569 1.079 0.487 1.966 sum -9.223 22.022 -1.724 23.937 Atomic orbital electron populations 1.22132 0.91955 1.03541 1.03245 1.21186 0.95425 0.79334 0.95437 1.45928 1.50990 1.11686 1.26666 1.16948 0.80339 0.82731 0.82182 1.90805 1.36565 1.76768 1.36976 1.27327 1.07041 0.99227 0.99003 1.66598 1.21498 1.01558 1.25923 1.22269 0.98024 0.95088 0.99672 1.27358 1.05771 1.05213 0.99925 1.83658 1.39536 1.02747 1.24329 1.22836 0.97600 0.98261 0.97059 1.23241 0.95273 0.98664 0.91164 1.64645 1.20390 1.36126 1.01923 1.22055 0.91346 0.97648 0.97381 1.20785 0.83141 0.86429 0.87126 1.90460 1.74519 1.62178 1.23003 1.41907 1.20709 1.38975 1.19353 1.19655 1.03624 1.19881 1.02752 0.90486 1.25975 0.98640 1.00075 0.96454 1.69664 1.27167 1.44868 1.14326 0.84925 0.77796 0.77877 0.78082 1.20004 1.19625 1.19636 1.23353 0.99618 0.90803 0.95180 0.90358 0.92225 0.90438 0.75309 0.78149 0.75935 0.91933 0.90130 0.90336 0.95343 0.90685 0.86481 0.76910 0.91324 0.90644 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.15 71.98 0.59 -2.54 16 2 C 0.17 3.83 0.94 4.48 0.00 3.83 16 3 N -0.70 -13.83 5.15 -422.31 -2.17 -16.01 16 4 C 0.60 15.06 7.00 86.61 0.61 15.66 16 5 O -0.53 -17.71 13.95 -4.10 -0.06 -17.77 16 6 C -0.05 -1.14 7.46 87.25 0.65 -0.48 16 7 N -0.44 -10.43 10.59 -190.32 -2.02 -12.44 16 8 C 0.01 0.08 11.24 83.95 0.94 1.03 16 9 C -0.24 -2.25 11.09 66.91 0.74 -1.51 16 10 S 0.24 2.81 22.31 -56.49 -1.26 1.55 16 11 C -0.12 -3.46 5.85 31.80 0.19 -3.27 16 12 C 0.04 1.52 5.30 86.65 0.46 1.97 16 13 N -0.51 -15.44 5.26 -887.59 -4.67 -20.11 16 14 C 0.05 1.50 5.52 85.55 0.47 1.97 16 15 C 0.44 20.12 7.49 87.65 0.66 20.77 16 16 O -0.62 -33.09 13.09 -3.08 -0.04 -33.13 16 17 N -0.57 -28.50 5.29 -306.97 -1.62 -30.12 16 18 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 21 N -0.92 -48.61 13.05 21.66 0.28 -48.33 16 22 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 C 0.04 0.78 6.15 86.45 0.53 1.31 16 27 H 0.08 1.56 8.11 -2.39 -0.02 1.54 16 28 H 0.06 1.53 6.03 -2.39 -0.01 1.52 16 29 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.41 5.71 7.23 -92.71 -0.67 5.04 16 31 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.22 0.28 8.06 -2.91 -0.02 0.25 16 33 H 0.06 1.99 6.81 -2.39 -0.02 1.97 16 34 H 0.08 2.41 7.84 -2.39 -0.02 2.39 16 35 H 0.08 3.39 5.97 -2.38 -0.01 3.38 16 36 H 0.03 0.98 8.02 -2.39 -0.02 0.96 16 37 H 0.08 2.03 7.81 -2.39 -0.02 2.01 16 38 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 40 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 41 H 0.08 1.17 6.89 -2.39 -0.02 1.15 16 42 H 0.12 1.96 7.69 -2.39 -0.02 1.94 16 Total: -1.00 -76.49 359.11 -2.72 -79.21 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.31 Total: 31.53 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 7.12 Total: 21.00 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -10.20 Total: -127.02 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -0.10 Total: -50.90 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.26 Total: 1.55 kcal Total: -76.49 -2.72 -79.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671679560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.561 kcal (2) G-P(sol) polarization free energy of solvation -76.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds