Wall clock time and date at job start Tue Mar 31 2020 20:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 110.27395 * 2 1 4 4 C 1.34777 * 120.00370 * 300.70641 * 3 2 1 5 5 O 1.21617 * 119.99681 * 359.97438 * 4 3 2 6 6 C 1.47255 * 120.00136 * 180.02562 * 4 3 2 7 7 N 1.30564 * 125.54070 * 179.97438 * 6 4 3 8 8 C 1.30698 * 115.90824 * 179.73290 * 7 6 4 9 9 C 1.34238 * 115.78210 * 0.02562 * 8 7 6 10 10 S 1.71066 * 109.09194 * 0.02562 * 9 8 7 11 11 C 1.54598 * 110.30333 * 237.91295 * 2 1 3 12 12 C 1.55203 * 102.79920 * 219.04938 * 11 2 1 13 13 N 1.48529 * 103.23629 * 37.43207 * 12 11 2 14 14 C 1.46901 * 111.00261 * 200.25473 * 13 12 11 15 15 C 1.50707 * 109.47202 * 287.40372 * 14 13 12 16 16 O 1.21283 * 119.99721 * 359.97438 * 15 14 13 17 17 N 1.34769 * 119.99967 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00155 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99885 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00216 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00001 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00027 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47095 * 90.00213 * 22 20 18 24 24 H 1.48504 * 109.47174 * 210.00195 * 22 20 18 25 25 H 1.48507 * 109.47237 * 330.00333 * 22 20 18 26 26 C 1.47897 * 105.82326 * 320.77348 * 13 12 11 27 27 H 1.08999 * 109.47583 * 59.29602 * 1 2 3 28 28 H 1.09000 * 109.47335 * 179.29874 * 1 2 3 29 29 H 1.09002 * 109.46946 * 299.29704 * 1 2 3 30 30 H 0.97005 * 120.00395 * 120.70365 * 3 2 1 31 31 H 1.07992 * 122.10968 * 179.97438 * 8 7 6 32 32 H 1.08001 * 125.45562 * 179.97438 * 9 8 7 33 33 H 1.08993 * 110.72634 * 337.38216 * 11 2 1 34 34 H 1.08997 * 110.72172 * 100.67178 * 11 2 1 35 35 H 1.08999 * 110.67845 * 278.99115 * 12 11 2 36 36 H 1.08988 * 110.78584 * 155.93493 * 12 11 2 37 37 H 1.09000 * 109.46918 * 47.39934 * 14 13 12 38 38 H 1.08998 * 109.47468 * 167.39830 * 14 13 12 39 39 H 0.97001 * 120.00180 * 359.97438 * 17 15 14 40 40 H 0.96998 * 120.00309 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.91715 * 265.97245 * 26 13 12 42 42 H 1.09005 * 109.91671 * 144.68541 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.7121 2.2129 -1.0035 5 8 0.9973 1.8287 -1.9093 6 6 2.2228 3.5940 -1.0038 7 7 1.9774 4.4938 -1.9175 8 6 2.5246 5.6653 -1.7268 9 6 3.2679 5.7887 -0.6159 10 16 3.2591 4.3025 0.2312 11 6 2.0665 -0.7702 -1.2284 12 6 3.2881 -1.5327 -0.6496 13 7 2.8333 -1.9216 0.7098 14 6 3.9768 -2.2225 1.5815 15 6 4.5877 -3.5382 1.1727 16 8 4.1165 -4.1638 0.2467 17 7 5.6575 -4.0195 1.8361 18 6 6.2129 -5.2166 1.4646 19 1 5.7933 -5.7737 0.6400 20 6 7.3162 -5.7126 2.1483 21 7 7.8270 -5.0345 3.1513 22 14 8.0733 -7.3433 1.6416 23 1 9.1249 -7.1048 0.6206 24 1 8.6764 -7.9994 2.8295 25 1 7.0205 -8.2221 1.0718 26 6 2.0645 -0.7673 1.2235 27 1 -0.3634 0.5247 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3633 0.5029 0.8962 30 1 2.6081 1.6806 0.7223 31 1 2.3880 6.4823 -2.4198 32 1 3.7889 6.6828 -0.3068 33 1 1.3178 -1.4680 -1.6033 34 1 2.3773 -0.0788 -2.0116 35 1 4.1580 -0.8784 -0.5917 36 1 3.5117 -2.4158 -1.2479 37 1 4.7216 -1.4320 1.4896 38 1 3.6387 -2.2846 2.6159 39 1 6.0345 -3.5189 2.5765 40 1 8.5974 -5.3805 3.6284 41 1 2.7148 -0.1205 1.8124 42 1 1.2327 -1.1175 1.8347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671679561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:23 Heat of formation + Delta-G solvation = -2.849213 kcal Electronic energy + Delta-G solvation = -26516.885573 eV Core-core repulsion = 22624.490675 eV Total energy + Delta-G solvation = -3892.394898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87990 -39.93744 -38.66271 -37.54467 -34.76663 -33.82014 -32.15459 -31.22714 -30.67552 -29.65622 -27.57800 -26.79618 -25.33794 -23.96148 -22.85273 -21.48677 -20.13245 -19.93280 -19.25644 -19.05181 -17.88883 -17.24999 -16.34920 -16.08169 -15.82741 -15.75440 -15.04249 -14.84557 -14.58472 -14.41987 -14.21698 -13.93662 -13.85691 -13.55980 -13.37368 -13.11769 -12.58632 -12.43469 -12.17353 -12.07508 -11.81287 -11.50099 -11.36548 -11.27394 -11.04957 -10.95132 -10.78959 -10.58370 -10.39052 -10.21601 -10.19338 -9.95771 -9.52180 -9.48529 -9.31618 -8.51507 -8.03177 -7.94547 -6.41640 -3.82168 -0.22279 0.68266 1.11140 1.95558 2.44093 2.86458 3.17954 3.26629 3.32723 3.89527 3.92440 4.05344 4.27352 4.31503 4.52188 4.60407 4.66643 4.80462 4.84391 5.10977 5.22278 5.27298 5.39196 5.43480 5.50863 5.54877 5.67272 5.75740 5.78399 5.87973 5.94128 6.15018 6.17354 6.26951 6.32690 6.41425 6.89728 7.09039 7.14527 7.22743 7.55575 7.75857 8.06603 8.62290 9.18824 9.54824 10.06965 10.76281 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002306 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.317428 B =12139.211645 C =12980.188157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.166 3.834 3 N -0.711 5.711 4 C 0.596 3.404 5 O -0.489 6.489 6 C -0.004 4.004 7 N -0.399 5.399 8 C 0.028 3.972 9 C -0.261 4.261 10 S 0.180 5.820 11 C -0.122 4.122 12 C 0.039 3.961 13 N -0.486 5.486 14 C 0.036 3.964 15 C 0.446 3.554 16 O -0.575 6.575 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.035 3.965 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.396 0.604 31 H 0.182 0.818 32 H 0.186 0.814 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.101 0.899 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.048 0.952 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.026 22.903 -1.089 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.081 3.919 3 N -0.365 5.365 4 C 0.377 3.623 5 O -0.362 6.362 6 C -0.281 4.281 7 N -0.115 5.115 8 C -0.129 4.129 9 C -0.402 4.402 10 S 0.434 5.566 11 C -0.161 4.161 12 C -0.088 4.088 13 N -0.210 5.210 14 C -0.096 4.096 15 C 0.231 3.769 16 O -0.458 6.458 17 N -0.203 5.203 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.093 4.093 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.232 0.768 31 H 0.198 0.802 32 H 0.203 0.797 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.922 21.102 -1.783 23.387 hybrid contribution 1.657 1.493 0.249 2.244 sum -8.265 22.595 -1.535 24.108 Atomic orbital electron populations 1.22187 0.92730 1.03431 1.03093 1.21296 0.94949 0.78970 0.96675 1.46108 1.52563 1.12610 1.25186 1.16643 0.80869 0.81886 0.82866 1.90846 1.35207 1.75154 1.35010 1.27668 1.04608 0.99736 0.96041 1.66636 1.19407 1.00330 1.25144 1.21907 0.97580 0.95319 0.98069 1.26816 1.07872 1.04447 1.01092 1.83931 1.43901 1.03455 1.25324 1.22942 0.98347 0.98538 0.96247 1.23381 0.95164 0.99663 0.90605 1.64546 1.20960 1.33473 1.02046 1.22095 0.92313 0.97402 0.97791 1.19664 0.83263 0.87740 0.86263 1.90516 1.63342 1.60726 1.31236 1.41854 1.26565 1.20827 1.31088 1.19692 1.10324 0.96925 1.15707 0.87926 1.25247 0.97041 0.99745 0.95957 1.69607 1.24440 1.39287 1.21175 0.85868 0.79189 0.81441 0.77864 1.20458 1.20949 1.19388 1.23238 0.99041 0.91813 0.95252 0.90330 0.90569 0.92563 0.76839 0.80155 0.79656 0.89318 0.90349 0.94446 0.88039 0.93240 0.89251 0.77568 0.91923 0.93369 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.14 37.16 0.30 -1.37 16 2 C 0.17 1.87 0.94 -130.47 -0.12 1.75 16 3 N -0.71 -7.04 5.15 -47.47 -0.24 -7.28 16 4 C 0.60 7.16 7.00 -12.60 -0.09 7.07 16 5 O -0.49 -7.48 13.94 5.26 0.07 -7.41 16 6 C 0.00 -0.04 7.46 -14.43 -0.11 -0.15 16 7 N -0.40 -4.60 10.59 -11.51 -0.12 -4.72 16 8 C 0.03 0.22 11.24 -19.44 -0.22 0.00 16 9 C -0.26 -1.54 11.09 29.32 0.33 -1.21 16 10 S 0.18 1.19 22.31 -107.50 -2.40 -1.20 16 11 C -0.12 -1.64 5.85 -24.73 -0.14 -1.79 16 12 C 0.04 0.62 5.94 -1.76 -0.01 0.61 16 13 N -0.49 -7.69 4.91 -231.72 -1.14 -8.83 16 14 C 0.04 0.61 5.19 -4.97 -0.03 0.58 16 15 C 0.45 10.31 7.61 -10.99 -0.08 10.23 16 16 O -0.57 -15.36 14.64 5.55 0.08 -15.27 16 17 N -0.57 -14.12 5.29 -10.96 -0.06 -14.18 16 18 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 22 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 26 C 0.04 0.41 6.12 -2.76 -0.02 0.39 16 27 H 0.08 0.97 6.17 -51.93 -0.32 0.65 16 28 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.40 2.99 7.23 -40.82 -0.30 2.69 16 31 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.19 0.51 8.06 -52.49 -0.42 0.08 16 33 H 0.09 1.22 7.86 -51.93 -0.41 0.81 16 34 H 0.08 1.10 6.68 -51.93 -0.35 0.76 16 35 H 0.04 0.56 7.81 -51.93 -0.41 0.16 16 36 H 0.10 1.90 7.10 -51.94 -0.37 1.54 16 37 H 0.05 0.75 7.83 -51.93 -0.41 0.35 16 38 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 39 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.05 0.46 7.09 -51.93 -0.37 0.09 16 42 H 0.10 1.02 7.68 -51.93 -0.40 0.62 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -34.13 361.80 -8.34 -42.48 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -5.26 Total: 10.42 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.43 Total: 8.23 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.84 Total: -58.64 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.15 Total: -22.69 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.40 Total: -1.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.13 -8.34 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671679561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.627 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds