Wall clock time and date at job start Tue Mar 31 2020 20:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 110.27395 * 2 1 4 4 C 1.34777 * 120.00370 * 300.70641 * 3 2 1 5 5 O 1.21617 * 119.99681 * 359.97438 * 4 3 2 6 6 C 1.47255 * 120.00136 * 180.02562 * 4 3 2 7 7 N 1.30564 * 125.54070 * 179.97438 * 6 4 3 8 8 C 1.30698 * 115.90824 * 179.73290 * 7 6 4 9 9 C 1.34238 * 115.78210 * 0.02562 * 8 7 6 10 10 S 1.71066 * 109.09194 * 0.02562 * 9 8 7 11 11 C 1.54598 * 110.30333 * 237.91295 * 2 1 3 12 12 C 1.55203 * 102.79920 * 219.04938 * 11 2 1 13 13 N 1.48529 * 103.23629 * 37.43207 * 12 11 2 14 14 C 1.46901 * 111.00261 * 200.25473 * 13 12 11 15 15 C 1.50707 * 109.47202 * 287.40372 * 14 13 12 16 16 O 1.21283 * 119.99721 * 359.97438 * 15 14 13 17 17 N 1.34769 * 119.99967 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00155 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99885 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00216 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00001 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00027 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47095 * 90.00213 * 22 20 18 24 24 H 1.48504 * 109.47174 * 210.00195 * 22 20 18 25 25 H 1.48507 * 109.47237 * 330.00333 * 22 20 18 26 26 C 1.47897 * 105.82326 * 320.77348 * 13 12 11 27 27 H 1.08999 * 109.47583 * 59.29602 * 1 2 3 28 28 H 1.09000 * 109.47335 * 179.29874 * 1 2 3 29 29 H 1.09002 * 109.46946 * 299.29704 * 1 2 3 30 30 H 0.97005 * 120.00395 * 120.70365 * 3 2 1 31 31 H 1.07992 * 122.10968 * 179.97438 * 8 7 6 32 32 H 1.08001 * 125.45562 * 179.97438 * 9 8 7 33 33 H 1.08993 * 110.72634 * 337.38216 * 11 2 1 34 34 H 1.08997 * 110.72172 * 100.67178 * 11 2 1 35 35 H 1.08999 * 110.67845 * 278.99115 * 12 11 2 36 36 H 1.08988 * 110.78584 * 155.93493 * 12 11 2 37 37 H 1.09000 * 109.46918 * 47.39934 * 14 13 12 38 38 H 1.08998 * 109.47468 * 167.39830 * 14 13 12 39 39 H 0.97001 * 120.00180 * 359.97438 * 17 15 14 40 40 H 0.96998 * 120.00309 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.91715 * 265.97245 * 26 13 12 42 42 H 1.09005 * 109.91671 * 144.68541 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.7121 2.2129 -1.0035 5 8 0.9973 1.8287 -1.9093 6 6 2.2228 3.5940 -1.0038 7 7 1.9774 4.4938 -1.9175 8 6 2.5246 5.6653 -1.7268 9 6 3.2679 5.7887 -0.6159 10 16 3.2591 4.3025 0.2312 11 6 2.0665 -0.7702 -1.2284 12 6 3.2881 -1.5327 -0.6496 13 7 2.8333 -1.9216 0.7098 14 6 3.9768 -2.2225 1.5815 15 6 4.5877 -3.5382 1.1727 16 8 4.1165 -4.1638 0.2467 17 7 5.6575 -4.0195 1.8361 18 6 6.2129 -5.2166 1.4646 19 1 5.7933 -5.7737 0.6400 20 6 7.3162 -5.7126 2.1483 21 7 7.8270 -5.0345 3.1513 22 14 8.0733 -7.3433 1.6416 23 1 9.1249 -7.1048 0.6206 24 1 8.6764 -7.9994 2.8295 25 1 7.0205 -8.2221 1.0718 26 6 2.0645 -0.7673 1.2235 27 1 -0.3634 0.5247 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3633 0.5029 0.8962 30 1 2.6081 1.6806 0.7223 31 1 2.3880 6.4823 -2.4198 32 1 3.7889 6.6828 -0.3068 33 1 1.3178 -1.4680 -1.6033 34 1 2.3773 -0.0788 -2.0116 35 1 4.1580 -0.8784 -0.5917 36 1 3.5117 -2.4158 -1.2479 37 1 4.7216 -1.4320 1.4896 38 1 3.6387 -2.2846 2.6159 39 1 6.0345 -3.5189 2.5765 40 1 8.5974 -5.3805 3.6284 41 1 2.7148 -0.1205 1.8124 42 1 1.2327 -1.1175 1.8347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671679561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:21 Heat of formation + Delta-G solvation = -30.912360 kcal Electronic energy + Delta-G solvation = -26518.102483 eV Core-core repulsion = 22624.490675 eV Total energy + Delta-G solvation = -3893.611808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77877 -40.73841 -40.06895 -38.91923 -36.09625 -35.55852 -33.34690 -33.00568 -31.40964 -30.70970 -28.90432 -27.50551 -26.82998 -25.41090 -23.66648 -22.65426 -21.09476 -20.83350 -20.73924 -19.88263 -19.77214 -18.09827 -17.74270 -17.21780 -16.75216 -16.57753 -16.44983 -16.11437 -16.05111 -15.73921 -15.40359 -15.01950 -14.82806 -14.69703 -14.38293 -14.17120 -14.14001 -13.64400 -13.41643 -13.23875 -12.95763 -12.92442 -12.60679 -12.46290 -12.39738 -12.38477 -12.11384 -12.01836 -11.94677 -11.46278 -11.40094 -10.76327 -10.71630 -10.36251 -10.28061 -9.97654 -9.94460 -9.32630 -8.44579 -5.92320 -0.83636 0.10075 0.57552 1.28087 1.38620 1.42444 1.54694 1.64790 2.09970 2.11125 2.30114 2.82258 3.21616 3.23688 3.42524 3.47911 3.67387 3.85667 3.89398 4.21582 4.26983 4.28164 4.30669 4.33846 4.44502 4.51276 4.57766 4.70433 4.80504 4.84526 4.93649 5.00224 5.06688 5.11027 5.30767 5.36576 5.43473 5.82976 5.93708 6.09789 6.19388 6.59973 6.64357 6.94828 7.16593 7.60651 8.17490 8.72914 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002306 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.317428 B =12139.211645 C =12980.188157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.173 3.827 3 N -0.698 5.698 4 C 0.596 3.404 5 O -0.535 6.535 6 C -0.053 4.053 7 N -0.439 5.439 8 C 0.005 3.995 9 C -0.243 4.243 10 S 0.248 5.752 11 C -0.115 4.115 12 C 0.044 3.956 13 N -0.509 5.509 14 C 0.048 3.952 15 C 0.441 3.559 16 O -0.617 6.617 17 N -0.576 5.576 18 C -0.330 4.330 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.989 3.011 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.275 1.275 26 C 0.040 3.960 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.411 0.589 31 H 0.201 0.799 32 H 0.224 0.776 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.080 0.920 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.188 25.162 1.183 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.088 3.912 3 N -0.352 5.352 4 C 0.379 3.621 5 O -0.411 6.411 6 C -0.326 4.326 7 N -0.156 5.156 8 C -0.151 4.151 9 C -0.383 4.383 10 S 0.501 5.499 11 C -0.154 4.154 12 C -0.084 4.084 13 N -0.234 5.234 14 C -0.083 4.083 15 C 0.229 3.771 16 O -0.503 6.503 17 N -0.214 5.214 18 C -0.460 4.460 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.813 3.187 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.200 1.200 26 C -0.088 4.088 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.248 0.752 31 H 0.217 0.783 32 H 0.240 0.760 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.231 0.769 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.070 23.385 0.539 25.088 hybrid contribution 1.425 0.913 -0.446 1.750 sum -7.645 24.298 0.093 25.472 Atomic orbital electron populations 1.22126 0.92164 1.03414 1.03196 1.21141 0.95315 0.79410 0.95377 1.45910 1.52355 1.11734 1.25200 1.16940 0.80118 0.82737 0.82355 1.90813 1.37325 1.76327 1.36675 1.27326 1.07577 0.99277 0.98450 1.66601 1.20710 1.01720 1.26609 1.22255 0.98339 0.94932 0.99550 1.27360 1.05916 1.05404 0.99663 1.83627 1.41000 1.02665 1.22627 1.22815 0.97302 0.98207 0.97106 1.23195 0.96322 0.98157 0.90719 1.64440 1.20763 1.36289 1.01860 1.21977 0.93177 0.94061 0.99078 1.20822 0.82118 0.89328 0.84866 1.90495 1.64282 1.62564 1.32914 1.41913 1.27355 1.20438 1.31659 1.19613 1.11723 0.98513 1.16110 0.90595 1.25967 0.96844 1.02670 0.95724 1.69657 1.24678 1.40385 1.21426 0.84985 0.78173 0.77550 0.77986 1.19767 1.19491 1.19970 1.23297 0.99431 0.90789 0.95274 0.92266 0.90583 0.90450 0.75176 0.78254 0.75981 0.90335 0.91313 0.93750 0.92156 0.90689 0.86396 0.76944 0.91359 0.90232 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.14 71.98 0.59 -2.51 16 2 C 0.17 3.70 0.94 4.48 0.00 3.70 16 3 N -0.70 -12.76 5.15 -422.35 -2.17 -14.93 16 4 C 0.60 14.26 7.00 86.61 0.61 14.87 16 5 O -0.54 -17.12 13.94 -4.08 -0.06 -17.17 16 6 C -0.05 -1.08 7.46 87.25 0.65 -0.42 16 7 N -0.44 -10.00 10.59 -190.32 -2.02 -12.01 16 8 C 0.01 0.08 11.24 83.95 0.94 1.02 16 9 C -0.24 -2.01 11.09 66.91 0.74 -1.27 16 10 S 0.25 2.51 22.31 -56.49 -1.26 1.25 16 11 C -0.12 -3.19 5.85 31.89 0.19 -3.01 16 12 C 0.04 1.40 5.94 86.74 0.52 1.91 16 13 N -0.51 -15.47 4.91 -887.04 -4.35 -19.82 16 14 C 0.05 1.55 5.19 85.56 0.44 1.99 16 15 C 0.44 20.58 7.61 87.66 0.67 21.25 16 16 O -0.62 -34.12 14.64 -3.04 -0.04 -34.16 16 17 N -0.58 -28.98 5.29 -306.99 -1.62 -30.61 16 18 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 19 H 0.08 4.62 7.16 -2.91 -0.02 4.59 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 21 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 22 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C 0.04 0.80 6.12 86.45 0.53 1.33 16 27 H 0.06 1.49 6.17 -2.39 -0.01 1.47 16 28 H 0.08 1.55 8.13 -2.39 -0.02 1.53 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.41 4.99 7.23 -92.70 -0.67 4.32 16 31 H 0.20 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.22 0.08 8.06 -2.91 -0.02 0.05 16 33 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 34 H 0.07 2.04 6.68 -2.39 -0.02 2.02 16 35 H 0.04 1.32 7.81 -2.39 -0.02 1.30 16 36 H 0.06 2.41 7.10 -2.39 -0.02 2.40 16 37 H 0.08 2.05 7.83 -2.39 -0.02 2.03 16 38 H 0.12 3.15 8.08 -2.39 -0.02 3.13 16 39 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 40 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 41 H 0.08 1.14 7.09 -2.39 -0.02 1.12 16 42 H 0.11 1.96 7.68 -2.38 -0.02 1.94 16 Total: -1.00 -78.38 361.80 -2.38 -80.76 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -0.32 Total: 29.64 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 7.16 Total: 20.84 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -9.88 Total: -126.10 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.10 Total: -51.34 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.26 Total: 1.25 kcal Total: -78.38 -2.38 -80.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671679561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.849 kcal (2) G-P(sol) polarization free energy of solvation -78.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds