Wall clock time and date at job start Tue Mar 31 2020 20:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31891 * 118.95267 * 2 1 4 4 C 1.32131 * 120.96496 * 179.97438 * 3 2 1 5 5 C 1.39963 * 118.92516 * 359.97438 * 4 3 2 6 6 C 1.47835 * 120.93906 * 179.72470 * 5 4 3 7 7 O 1.21551 * 120.00193 * 173.91804 * 6 5 4 8 8 N 1.34778 * 119.99762 * 353.92315 * 6 5 4 9 9 C 1.46498 * 119.99599 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47029 * 179.97438 * 9 8 6 11 11 N 1.46500 * 109.47029 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99529 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00538 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.99616 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47084 * 180.02562 * 14 12 11 16 16 C 1.76193 * 100.00040 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00098 * 359.97438 * 16 15 14 18 18 C 1.38805 * 120.00008 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99916 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99877 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47218 * 60.00188 * 20 18 16 22 22 H 1.48494 * 109.46921 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47379 * 300.00069 * 20 18 16 24 24 C 1.39927 * 118.12328 * 359.97438 * 5 4 3 25 25 C 1.50695 * 120.53952 * 179.97438 * 24 5 4 26 26 N 1.31853 * 118.95235 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46588 * 90.00399 * 1 2 3 28 28 H 1.08992 * 109.47163 * 209.99985 * 1 2 3 29 29 H 1.08997 * 109.47369 * 330.00719 * 1 2 3 30 30 H 1.08001 * 120.53339 * 179.97438 * 4 3 2 31 31 H 0.96996 * 120.00121 * 359.97438 * 8 6 5 32 32 H 1.09001 * 109.47412 * 299.99408 * 9 8 6 33 33 H 1.09001 * 109.47460 * 59.99812 * 9 8 6 34 34 H 1.09001 * 109.46729 * 300.00058 * 10 9 8 35 35 H 1.09001 * 109.46964 * 59.99739 * 10 9 8 36 36 H 0.96995 * 120.00184 * 0.02562 * 11 10 9 37 37 H 1.08994 * 109.47210 * 300.00651 * 14 12 11 38 38 H 1.09001 * 109.47162 * 60.00490 * 14 12 11 39 39 H 0.97004 * 120.00379 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47500 * 83.66678 * 25 24 5 41 41 H 1.09002 * 109.47200 * 203.66952 * 25 24 5 42 42 H 1.09002 * 109.47269 * 323.66791 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1541 0.0000 4 6 3.4660 1.2005 0.0005 5 6 4.1855 0.0000 0.0016 6 6 5.6639 -0.0001 -0.0039 7 8 6.2720 -1.0465 0.1087 8 7 6.3373 1.1602 -0.1336 9 6 7.8022 1.1601 -0.1385 10 6 8.3117 2.5940 -0.2983 11 7 9.7767 2.5940 -0.3026 12 6 10.4501 3.7542 -0.4332 13 8 9.8434 4.7981 -0.5468 14 6 11.9572 3.7542 -0.4382 15 16 12.5599 5.4504 -0.6272 16 6 14.2979 5.1622 -0.6019 17 1 14.6770 4.1568 -0.4922 18 6 15.1798 6.2273 -0.7219 19 7 14.7178 7.4525 -0.8550 20 14 17.0225 5.9217 -0.6944 21 1 17.3919 5.0219 -1.8165 22 1 17.7406 7.2133 -0.8393 23 1 17.3999 5.2868 0.5939 24 6 3.4661 -1.2002 0.0027 25 6 4.1857 -2.5243 0.0033 26 7 2.1453 -1.1537 0.0005 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 3.9817 2.1494 0.0001 31 1 5.8520 1.9951 -0.2237 32 1 8.1687 0.7467 0.8011 33 1 8.1629 0.5522 -0.9682 34 1 7.9452 3.0071 -1.2381 35 1 7.9511 3.2023 0.5311 36 1 10.2620 1.7591 -0.2122 37 1 12.3236 3.3413 0.5016 38 1 12.3178 3.1456 -1.2675 39 1 15.3341 8.1969 -0.9393 40 1 4.4591 -2.7888 1.0247 41 1 3.5320 -3.2932 -0.4086 42 1 5.0864 -2.4486 -0.6060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686444367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:42 Heat of formation + Delta-G solvation = -28.069213 kcal Electronic energy + Delta-G solvation = -24690.748645 eV Core-core repulsion = 20797.260125 eV Total energy + Delta-G solvation = -3893.488519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.90750 -39.97585 -39.21732 -36.29720 -34.99351 -34.34674 -33.78431 -32.45715 -30.63449 -29.71462 -29.20414 -27.67722 -25.51210 -24.58661 -23.51469 -22.55718 -21.49922 -20.43264 -18.57461 -18.40261 -17.78665 -16.61437 -16.48500 -16.46204 -16.06936 -15.92526 -15.54965 -15.11890 -14.82756 -14.70468 -14.29178 -14.13275 -13.91749 -13.64073 -13.54960 -13.23805 -12.94278 -12.90502 -12.71981 -12.59571 -12.46592 -12.17619 -12.10194 -11.74463 -11.10993 -11.07690 -11.05718 -10.79869 -10.28888 -10.05348 -9.86209 -9.85518 -9.60740 -9.54851 -9.11257 -9.05081 -8.28828 -6.54094 -6.24399 -3.95616 -0.14276 0.46513 2.27058 2.32100 2.98000 3.05027 3.16855 3.21947 3.25806 3.26865 3.30909 3.43112 3.68499 3.76948 4.09049 4.17734 4.23447 4.41101 4.55583 4.71055 4.82137 4.98337 5.05003 5.07710 5.10236 5.10924 5.23163 5.26688 5.37429 5.49269 5.52525 5.57964 5.67747 5.80785 5.83351 5.91505 6.08703 6.34907 6.41786 6.82945 7.45992 7.53547 7.56870 7.58172 8.32155 8.47701 9.20921 10.82955 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.035684 B = 0.001506 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.469410 B =18585.449646 C =19329.298714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.343 3.657 3 N -0.526 5.526 4 C 0.193 3.807 5 C -0.258 4.258 6 C 0.574 3.426 7 O -0.522 6.522 8 N -0.720 5.720 9 C 0.110 3.890 10 C 0.110 3.890 11 N -0.737 5.737 12 C 0.535 3.465 13 O -0.515 6.515 14 C -0.154 4.154 15 S -0.060 6.060 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.242 3.758 25 C -0.113 4.113 26 N -0.525 5.525 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.173 0.827 31 H 0.403 0.597 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.402 0.598 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.697 -18.592 1.963 31.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 N -0.241 5.241 4 C 0.026 3.974 5 C -0.266 4.266 6 C 0.359 3.641 7 O -0.399 6.399 8 N -0.373 5.373 9 C -0.014 4.014 10 C -0.015 4.015 11 N -0.393 5.393 12 C 0.321 3.679 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.686 4.686 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C 0.096 3.904 25 C -0.170 4.170 26 N -0.241 5.241 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.190 0.810 31 H 0.238 0.762 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.236 0.764 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.227 -17.391 1.830 32.359 hybrid contribution 2.816 -1.194 0.162 3.063 sum -24.411 -18.585 1.992 30.745 Atomic orbital electron populations 1.20681 0.85101 1.04684 1.04387 1.23595 0.98605 0.83255 0.86743 1.68329 1.09577 1.30118 1.16091 1.23499 0.89813 0.97588 0.86547 1.21505 0.95661 0.96582 1.12846 1.17665 0.85936 0.83810 0.76639 1.90771 1.69453 1.30645 1.49067 1.45657 1.07438 1.09347 1.74832 1.21520 0.79078 0.97151 1.03645 1.21322 0.81869 0.95170 1.03178 1.45794 1.05700 1.10192 1.77578 1.20337 0.89715 0.82841 0.75032 1.90711 1.69907 1.31148 1.47123 1.23532 0.93072 1.08650 1.05170 1.85393 1.04112 0.98245 1.95550 1.22828 0.91003 0.96272 1.58460 0.90918 1.24988 0.99647 0.94408 0.94454 1.70001 1.35515 0.98659 1.46097 0.86219 0.82739 0.77712 0.78808 1.19925 1.20794 1.19919 1.22030 0.88787 0.95700 0.83917 1.21119 1.00558 0.90446 1.04875 1.68307 1.09120 1.30111 1.16518 0.88999 0.89187 0.89105 0.80984 0.76203 0.90192 0.90212 0.90834 0.90830 0.76428 0.89039 0.89037 0.92092 0.88936 0.90417 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 10.31 36.01 0.37 -0.05 16 2 C 0.34 2.82 7.64 -157.06 -1.20 1.62 16 3 N -0.53 -4.44 10.32 -10.39 -0.11 -4.55 16 4 C 0.19 1.35 10.80 -16.78 -0.18 1.17 16 5 C -0.26 -2.10 5.91 -104.69 -0.62 -2.71 16 6 C 0.57 4.91 7.72 -12.33 -0.10 4.81 16 7 O -0.52 -5.75 13.53 5.32 0.07 -5.68 16 8 N -0.72 -4.71 5.51 -61.25 -0.34 -5.05 16 9 C 0.11 0.79 5.79 -4.04 -0.02 0.77 16 10 C 0.11 1.01 5.79 -4.04 -0.02 0.99 16 11 N -0.74 -8.56 5.56 -60.29 -0.33 -8.89 16 12 C 0.53 9.28 7.85 -10.98 -0.09 9.19 16 13 O -0.52 -11.03 15.86 5.56 0.09 -10.94 16 14 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 16 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 17 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 20 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.24 2.16 6.86 -81.82 -0.56 1.60 16 25 C -0.11 -0.86 8.99 36.00 0.32 -0.53 16 26 N -0.53 -4.81 10.26 -6.67 -0.07 -4.88 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.17 0.63 6.58 -52.49 -0.35 0.28 16 31 H 0.40 1.71 6.65 -40.82 -0.27 1.44 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.40 3.52 8.47 -40.82 -0.35 3.17 16 37 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 38 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.90 5.95 -51.93 -0.31 0.60 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -37.06 377.84 -8.64 -45.70 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.47 Total: 0.04 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.67 Total: 1.35 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.11 Total: -48.47 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.16 Total: -16.62 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.06 -8.64 -45.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686444367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.629 kcal (2) G-P(sol) polarization free energy of solvation -37.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds