Wall clock time and date at job start Tue Mar 31 2020 20:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31927 * 120.17037 * 2 1 4 4 N 1.28278 * 122.32368 * 180.02562 * 3 2 1 5 5 C 1.31913 * 122.51866 * 0.02562 * 4 3 2 6 6 C 1.38505 * 119.96986 * 359.97438 * 5 4 3 7 7 C 1.39730 * 120.17359 * 179.72695 * 2 1 3 8 8 C 1.48134 * 121.14691 * 359.97438 * 7 2 1 9 9 O 1.21512 * 119.99951 * 306.74653 * 8 7 2 10 10 N 1.34773 * 120.00082 * 126.73670 * 8 7 2 11 11 C 1.46505 * 120.00146 * 4.17647 * 10 8 7 12 12 C 1.46500 * 120.00012 * 184.17140 * 10 8 7 13 13 C 1.53007 * 109.46839 * 90.00766 * 12 10 8 14 14 N 1.46500 * 109.46839 * 179.97438 * 13 12 10 15 15 C 1.34781 * 119.99702 * 179.97438 * 14 13 12 16 16 O 1.21277 * 119.99779 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99697 * 180.02562 * 15 14 13 18 18 S 1.80996 * 109.46994 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00096 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99933 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00079 * 179.97438 * 19 18 17 22 22 N 1.31630 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48489 * 109.47177 * 90.00349 * 23 21 19 25 25 H 1.48500 * 109.47235 * 210.00918 * 23 21 19 26 26 H 1.48501 * 109.46895 * 330.00357 * 23 21 19 27 27 H 1.08994 * 109.47261 * 85.33821 * 1 2 3 28 28 H 1.08998 * 109.47278 * 325.33042 * 1 2 3 29 29 H 1.09003 * 109.46510 * 205.33548 * 1 2 3 30 30 H 1.08007 * 120.01637 * 179.97438 * 5 4 3 31 31 H 1.07999 * 121.08940 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46971 * 84.56383 * 11 10 8 33 33 H 1.08990 * 109.47536 * 204.56786 * 11 10 8 34 34 H 1.09005 * 109.47034 * 324.57207 * 11 10 8 35 35 H 1.09004 * 109.47074 * 210.00003 * 12 10 8 36 36 H 1.08993 * 109.47208 * 330.00464 * 12 10 8 37 37 H 1.08997 * 109.47034 * 299.99534 * 13 12 10 38 38 H 1.08993 * 109.47467 * 59.99857 * 13 12 10 39 39 H 0.97005 * 120.00246 * 359.97438 * 14 13 12 40 40 H 1.09011 * 109.46584 * 299.99485 * 17 15 14 41 41 H 1.08993 * 109.47456 * 59.99644 * 17 15 14 42 42 H 0.96996 * 120.00293 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1406 0.0000 4 7 3.4519 1.1888 -0.0005 5 6 4.2023 0.1039 -0.0015 6 6 3.6091 -1.1477 -0.0016 7 6 2.2093 -1.2080 0.0058 8 6 1.4984 -2.5076 0.0125 9 8 0.6548 -2.7342 0.8572 10 7 1.7871 -3.4385 -0.9183 11 6 2.8668 -3.2025 -1.8801 12 6 1.0214 -4.6864 -0.9683 13 6 -0.1858 -4.5074 -1.8912 14 7 -0.9511 -5.7555 -1.9417 15 6 -2.0647 -5.8331 -2.6971 16 8 -2.4333 -4.8694 -3.3345 17 6 -2.8523 -7.1168 -2.7486 18 16 -4.2811 -6.9047 -3.8392 19 6 -4.9999 -8.5088 -3.7174 20 1 -4.5380 -9.2617 -3.0961 21 6 -6.1604 -8.8044 -4.4192 22 7 -6.7237 -7.8866 -5.1761 23 14 -6.9228 -10.5048 -4.2895 24 1 -7.8928 -10.5279 -3.1654 25 1 -7.6255 -10.8301 -5.5566 26 1 -5.8560 -11.5081 -4.0435 27 1 -0.3633 0.0835 -1.0242 28 1 -0.3634 0.8452 0.5846 29 1 -0.3632 -0.9289 0.4398 30 1 5.2788 0.1915 -0.0023 31 1 4.2061 -2.0478 -0.0028 32 1 3.8189 -3.4924 -1.4358 33 1 2.6895 -3.7945 -2.7779 34 1 2.8952 -2.1447 -2.1421 35 1 1.6553 -5.4866 -1.3505 36 1 0.6778 -4.9423 0.0339 37 1 -0.8197 -3.7073 -1.5091 38 1 0.1578 -4.2515 -2.8934 39 1 -0.6565 -6.5262 -1.4315 40 1 -2.2184 -7.9169 -3.1311 41 1 -3.1956 -7.3730 -1.7463 42 1 -7.5344 -8.0932 -5.6668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688308858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:47 Heat of formation + Delta-G solvation = -5.758208 kcal Electronic energy + Delta-G solvation = -25566.953342 eV Core-core repulsion = 21674.432301 eV Total energy + Delta-G solvation = -3892.521042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91242 -40.22887 -39.15049 -36.65300 -34.81102 -34.30049 -33.66923 -32.44782 -30.68509 -28.96994 -28.43540 -27.44661 -25.81655 -25.45033 -23.70426 -23.17625 -20.81638 -20.21878 -18.46631 -18.07347 -17.90475 -16.98079 -16.54142 -16.45662 -16.15238 -15.67871 -15.44757 -15.24338 -15.14002 -14.82019 -14.25038 -14.14018 -13.96550 -13.83353 -13.44393 -13.33184 -13.22376 -12.99434 -12.67389 -12.59130 -12.42251 -12.20169 -11.55218 -11.49632 -11.07961 -11.04505 -11.02568 -10.78689 -10.73886 -10.23973 -10.07276 -9.84734 -9.56782 -9.34239 -9.09518 -9.00004 -8.26428 -6.52567 -6.23527 -3.94464 -0.12796 0.30033 1.86341 2.16842 2.94485 3.02612 3.03842 3.21123 3.26887 3.30775 3.45269 3.55539 3.72312 3.77570 3.94562 4.17218 4.18421 4.43953 4.48651 4.54913 4.67732 4.77970 4.87973 4.96587 5.02823 5.05897 5.11665 5.13083 5.22213 5.39544 5.50392 5.53127 5.55665 5.64053 5.81275 5.85028 5.88343 6.10059 6.48294 6.56979 7.37926 7.57387 7.60043 8.13453 8.33258 8.53421 9.21766 10.83888 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030182 B = 0.001803 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.487057 B =15525.182444 C =15925.324731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.121 3.879 3 N -0.240 5.240 4 N -0.225 5.225 5 C 0.030 3.970 6 C -0.084 4.084 7 C -0.126 4.126 8 C 0.567 3.433 9 O -0.508 6.508 10 N -0.603 5.603 11 C 0.070 3.930 12 C 0.104 3.896 13 C 0.107 3.893 14 N -0.737 5.737 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.180 0.820 31 H 0.157 0.843 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.276 9.926 10.646 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.024 4.024 3 N -0.083 5.083 4 N -0.066 5.066 5 C -0.134 4.134 6 C -0.113 4.113 7 C -0.140 4.140 8 C 0.353 3.647 9 O -0.383 6.383 10 N -0.336 5.336 11 C -0.072 4.072 12 C -0.019 4.019 13 C -0.019 4.019 14 N -0.393 5.393 15 C 0.320 3.680 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.197 0.803 31 H 0.175 0.825 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.233 0.767 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 24.996 13.132 9.896 29.920 hybrid contribution 0.419 -4.153 0.957 4.282 sum 25.415 8.979 10.854 29.058 Atomic orbital electron populations 1.21020 0.86478 1.06004 1.04512 1.23085 0.99561 0.88481 0.91240 1.73123 1.01492 1.23803 1.09851 1.72907 0.99605 1.27814 1.06279 1.24318 1.02838 0.89138 0.97107 1.22678 0.93627 1.00641 0.94390 1.20989 0.94936 0.95375 1.02733 1.18010 0.82315 0.82895 0.81484 1.90842 1.32327 1.78490 1.36602 1.47604 1.35296 1.18341 1.32372 1.22053 0.89323 1.02919 0.92956 1.21713 0.92915 0.85034 1.02206 1.21546 0.92420 0.88114 0.99794 1.45828 1.27867 1.14693 1.50914 1.20327 0.79687 0.89988 0.78041 1.90710 1.67595 1.38240 1.42343 1.23528 1.03383 0.96982 1.06474 1.85417 1.21946 1.19059 1.56939 1.22862 1.13489 0.98081 1.33983 0.90892 1.24998 0.95919 0.98203 0.94489 1.70014 1.19456 1.33362 1.27418 0.86159 0.79136 0.82365 0.77785 1.20255 1.20745 1.19705 0.89160 0.89119 0.88272 0.80309 0.82523 0.91702 0.89625 0.91084 0.89104 0.88505 0.91205 0.91438 0.76704 0.89135 0.89086 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.93 36.01 0.36 -0.75 16 2 C 0.12 1.17 6.90 -81.99 -0.57 0.61 16 3 N -0.24 -2.62 11.42 33.81 0.39 -2.23 16 4 N -0.22 -2.16 11.48 30.53 0.35 -1.81 16 5 C 0.03 0.17 11.30 -17.42 -0.20 -0.03 16 6 C -0.08 -0.42 8.16 -38.78 -0.32 -0.74 16 7 C -0.13 -1.02 4.76 -104.57 -0.50 -1.51 16 8 C 0.57 5.16 6.67 -12.20 -0.08 5.08 16 9 O -0.51 -6.35 14.70 5.36 0.08 -6.27 16 10 N -0.60 -4.07 2.87 -182.58 -0.52 -4.60 16 11 C 0.07 0.25 9.18 59.85 0.55 0.80 16 12 C 0.10 0.74 5.53 -4.04 -0.02 0.71 16 13 C 0.11 1.15 6.00 -4.04 -0.02 1.12 16 14 N -0.74 -9.06 5.56 -60.29 -0.33 -9.40 16 15 C 0.53 9.63 7.85 -10.98 -0.09 9.55 16 16 O -0.52 -11.53 15.86 5.56 0.09 -11.44 16 17 C -0.15 -3.00 6.16 36.01 0.22 -2.77 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.02 13.22 55.49 0.73 -25.28 16 23 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.10 1.02 5.64 -51.93 -0.29 0.73 16 30 H 0.18 0.32 8.06 -52.48 -0.42 -0.10 16 31 H 0.16 0.27 6.86 -52.49 -0.36 -0.09 16 32 H 0.06 0.08 7.30 -51.93 -0.38 -0.29 16 33 H 0.09 0.25 8.03 -51.93 -0.42 -0.16 16 34 H 0.07 0.26 6.47 -51.93 -0.34 -0.07 16 35 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16 36 H 0.10 0.77 7.37 -51.93 -0.38 0.39 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.40 3.55 8.47 -40.82 -0.35 3.20 16 40 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -38.50 375.21 -6.70 -45.20 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.44 Total: -1.43 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -0.46 Total: -0.78 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.61 Total: -43.33 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.17 Total: -17.71 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.50 -6.70 -45.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688308858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.443 kcal (2) G-P(sol) polarization free energy of solvation -38.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds