Wall clock time and date at job start Tue Mar 31 2020 20:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31927 * 120.17037 * 2 1 4 4 N 1.28278 * 122.32368 * 180.02562 * 3 2 1 5 5 C 1.31913 * 122.51866 * 0.02562 * 4 3 2 6 6 C 1.38505 * 119.96986 * 359.97438 * 5 4 3 7 7 C 1.39730 * 120.17359 * 179.72695 * 2 1 3 8 8 C 1.48134 * 121.14691 * 359.97438 * 7 2 1 9 9 O 1.21512 * 119.99951 * 306.74653 * 8 7 2 10 10 N 1.34773 * 120.00082 * 126.73670 * 8 7 2 11 11 C 1.46505 * 120.00146 * 4.17647 * 10 8 7 12 12 C 1.46500 * 120.00012 * 184.17140 * 10 8 7 13 13 C 1.53007 * 109.46839 * 90.00766 * 12 10 8 14 14 N 1.46500 * 109.46839 * 179.97438 * 13 12 10 15 15 C 1.34781 * 119.99702 * 179.97438 * 14 13 12 16 16 O 1.21277 * 119.99779 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99697 * 180.02562 * 15 14 13 18 18 S 1.80996 * 109.46994 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00096 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99933 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00079 * 179.97438 * 19 18 17 22 22 N 1.31630 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48489 * 109.47177 * 90.00349 * 23 21 19 25 25 H 1.48500 * 109.47235 * 210.00918 * 23 21 19 26 26 H 1.48501 * 109.46895 * 330.00357 * 23 21 19 27 27 H 1.08994 * 109.47261 * 85.33821 * 1 2 3 28 28 H 1.08998 * 109.47278 * 325.33042 * 1 2 3 29 29 H 1.09003 * 109.46510 * 205.33548 * 1 2 3 30 30 H 1.08007 * 120.01637 * 179.97438 * 5 4 3 31 31 H 1.07999 * 121.08940 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46971 * 84.56383 * 11 10 8 33 33 H 1.08990 * 109.47536 * 204.56786 * 11 10 8 34 34 H 1.09005 * 109.47034 * 324.57207 * 11 10 8 35 35 H 1.09004 * 109.47074 * 210.00003 * 12 10 8 36 36 H 1.08993 * 109.47208 * 330.00464 * 12 10 8 37 37 H 1.08997 * 109.47034 * 299.99534 * 13 12 10 38 38 H 1.08993 * 109.47467 * 59.99857 * 13 12 10 39 39 H 0.97005 * 120.00246 * 359.97438 * 14 13 12 40 40 H 1.09011 * 109.46584 * 299.99485 * 17 15 14 41 41 H 1.08993 * 109.47456 * 59.99644 * 17 15 14 42 42 H 0.96996 * 120.00293 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1406 0.0000 4 7 3.4519 1.1888 -0.0005 5 6 4.2023 0.1039 -0.0015 6 6 3.6091 -1.1477 -0.0016 7 6 2.2093 -1.2080 0.0058 8 6 1.4984 -2.5076 0.0125 9 8 0.6548 -2.7342 0.8572 10 7 1.7871 -3.4385 -0.9183 11 6 2.8668 -3.2025 -1.8801 12 6 1.0214 -4.6864 -0.9683 13 6 -0.1858 -4.5074 -1.8912 14 7 -0.9511 -5.7555 -1.9417 15 6 -2.0647 -5.8331 -2.6971 16 8 -2.4333 -4.8694 -3.3345 17 6 -2.8523 -7.1168 -2.7486 18 16 -4.2811 -6.9047 -3.8392 19 6 -4.9999 -8.5088 -3.7174 20 1 -4.5380 -9.2617 -3.0961 21 6 -6.1604 -8.8044 -4.4192 22 7 -6.7237 -7.8866 -5.1761 23 14 -6.9228 -10.5048 -4.2895 24 1 -7.8928 -10.5279 -3.1654 25 1 -7.6255 -10.8301 -5.5566 26 1 -5.8560 -11.5081 -4.0435 27 1 -0.3633 0.0835 -1.0242 28 1 -0.3634 0.8452 0.5846 29 1 -0.3632 -0.9289 0.4398 30 1 5.2788 0.1915 -0.0023 31 1 4.2061 -2.0478 -0.0028 32 1 3.8189 -3.4924 -1.4358 33 1 2.6895 -3.7945 -2.7779 34 1 2.8952 -2.1447 -2.1421 35 1 1.6553 -5.4866 -1.3505 36 1 0.6778 -4.9423 0.0339 37 1 -0.8197 -3.7073 -1.5091 38 1 0.1578 -4.2515 -2.8934 39 1 -0.6565 -6.5262 -1.4315 40 1 -2.2184 -7.9169 -3.1311 41 1 -3.1956 -7.3730 -1.7463 42 1 -7.5344 -8.0932 -5.6668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688308858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:46 Heat of formation + Delta-G solvation = -35.790282 kcal Electronic energy + Delta-G solvation = -25568.255631 eV Core-core repulsion = 21674.432301 eV Total energy + Delta-G solvation = -3893.823330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.50521 -40.96951 -40.45530 -37.39985 -35.80966 -34.97419 -34.58291 -34.31024 -31.85804 -29.91861 -29.23607 -27.95637 -27.66279 -26.40441 -24.37781 -23.88574 -21.96551 -21.05421 -19.84012 -19.04080 -18.64689 -17.97679 -17.53487 -17.36860 -16.89814 -16.87479 -16.73554 -16.34513 -16.08217 -15.84641 -15.56493 -15.19659 -14.78415 -14.65355 -14.57392 -14.37313 -14.03836 -13.92514 -13.60670 -13.39404 -13.27172 -13.18165 -13.16325 -12.89373 -12.60471 -12.43731 -12.11682 -11.73740 -11.67946 -11.27335 -11.14246 -11.06079 -10.87692 -10.67954 -10.27499 -10.20282 -9.96331 -8.67004 -8.34510 -6.12769 -0.67884 -0.23126 1.14873 1.29612 1.42927 1.46134 1.55172 1.58309 1.67530 2.27161 2.35876 2.37961 2.87085 2.99773 3.06922 3.23858 3.32659 3.51488 3.74930 3.77456 3.92445 3.99752 4.14977 4.17410 4.30674 4.34020 4.35985 4.42619 4.49275 4.51684 4.59756 4.67471 4.83342 4.85911 4.87316 4.98196 5.13598 5.20009 5.39370 5.42342 6.01590 6.20106 6.45988 6.75819 7.06852 7.21297 7.54801 8.74674 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030182 B = 0.001803 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.487057 B =15525.182444 C =15925.324731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.103 3.897 3 N -0.274 5.274 4 N -0.260 5.260 5 C 0.041 3.959 6 C -0.059 4.059 7 C -0.139 4.139 8 C 0.566 3.434 9 O -0.552 6.552 10 N -0.596 5.596 11 C 0.060 3.940 12 C 0.113 3.887 13 C 0.109 3.891 14 N -0.708 5.708 15 C 0.534 3.466 16 O -0.567 6.567 17 C -0.128 4.128 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.256 1.256 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.223 0.777 31 H 0.201 0.799 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.067 0.933 39 H 0.420 0.580 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.789 7.373 11.503 32.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.042 4.042 3 N -0.116 5.116 4 N -0.100 5.100 5 C -0.124 4.124 6 C -0.088 4.088 7 C -0.154 4.154 8 C 0.353 3.647 9 O -0.430 6.430 10 N -0.328 5.328 11 C -0.081 4.081 12 C -0.010 4.010 13 C -0.016 4.016 14 N -0.363 5.363 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.280 4.280 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.180 1.180 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.240 0.760 31 H 0.218 0.782 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.258 0.742 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 28.583 10.574 10.772 32.324 hybrid contribution -0.480 -3.320 0.724 3.431 sum 28.104 7.255 11.497 31.219 Atomic orbital electron populations 1.20925 0.87179 1.05161 1.04402 1.23085 0.99504 0.89278 0.92355 1.73045 1.02524 1.24574 1.11488 1.72795 0.99351 1.30063 1.07810 1.25024 1.04453 0.88285 0.94631 1.23155 0.92292 1.02089 0.91275 1.20981 0.96400 0.94150 1.03821 1.18198 0.81764 0.83386 0.81378 1.90819 1.34251 1.79305 1.38631 1.47690 1.35446 1.17601 1.32039 1.22377 0.89589 1.03212 0.92904 1.21675 0.92066 0.86247 1.00977 1.21629 0.93086 0.86255 1.00672 1.45490 1.25833 1.16117 1.48908 1.20102 0.80789 0.88712 0.78388 1.90701 1.69272 1.39596 1.44930 1.23365 1.00540 0.98707 1.05355 1.85623 1.26665 1.20410 1.60136 1.23207 1.13877 0.98096 1.34100 0.89721 1.26146 0.96431 1.02864 0.93841 1.70185 1.20080 1.35971 1.28597 0.84941 0.78356 0.76699 0.77910 1.19465 1.20366 1.17997 0.89153 0.89042 0.89760 0.76014 0.78195 0.88141 0.88631 0.91342 0.85062 0.89129 0.94292 0.91460 0.74182 0.86612 0.87174 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 9.93 71.24 0.71 -1.70 16 2 C 0.10 2.09 6.90 42.91 0.30 2.38 16 3 N -0.27 -6.18 11.42 -46.95 -0.54 -6.72 16 4 N -0.26 -4.81 11.48 -57.33 -0.66 -5.46 16 5 C 0.04 0.34 11.30 84.74 0.96 1.30 16 6 C -0.06 -0.39 8.16 22.79 0.19 -0.21 16 7 C -0.14 -2.10 4.76 -19.83 -0.09 -2.19 16 8 C 0.57 9.78 6.67 86.87 0.58 10.36 16 9 O -0.55 -14.06 14.70 -3.75 -0.06 -14.11 16 10 N -0.60 -6.55 2.87 -849.86 -2.44 -8.99 16 11 C 0.06 0.19 9.18 127.77 1.17 1.36 16 12 C 0.11 1.29 5.53 86.38 0.48 1.77 16 13 C 0.11 2.22 6.00 86.38 0.52 2.73 16 14 N -0.71 -16.10 5.56 -463.06 -2.57 -18.67 16 15 C 0.53 19.04 7.85 87.66 0.69 19.73 16 16 O -0.57 -26.10 15.86 -3.02 -0.05 -26.15 16 17 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 18 S -0.16 -8.57 20.57 -56.49 -1.16 -9.73 16 19 C -0.54 -30.79 9.50 67.95 0.65 -30.14 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.67 5.49 84.86 0.47 1.14 16 22 N -0.91 -55.94 13.22 21.65 0.29 -55.66 16 23 Si 1.00 43.23 29.55 68.60 2.03 45.25 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 1.95 5.64 -2.39 -0.01 1.94 16 30 H 0.22 -0.27 8.06 -2.91 -0.02 -0.30 16 31 H 0.20 -0.49 6.86 -2.91 -0.02 -0.51 16 32 H 0.10 -0.34 7.30 -2.39 -0.02 -0.36 16 33 H 0.10 0.17 8.03 -2.39 -0.02 0.15 16 34 H 0.07 0.29 6.47 -2.38 -0.02 0.28 16 35 H 0.13 0.51 8.07 -2.38 -0.02 0.49 16 36 H 0.09 1.23 7.37 -2.39 -0.02 1.22 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.42 6.08 8.47 -92.70 -0.79 5.30 16 40 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 41 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -90.85 375.21 2.16 -88.69 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.28 Total: 9.49 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 7.04 Total: 2.05 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -5.92 Total: -95.50 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.10 Total: -40.26 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -90.85 2.16 -88.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688308858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.904 kcal (2) G-P(sol) polarization free energy of solvation -90.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds