Wall clock time and date at job start Tue Mar 31 2020 21:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47539 * 2 1 4 4 C 1.35368 * 126.38371 * 84.99713 * 3 2 1 5 5 C 1.41501 * 105.50078 * 180.02562 * 4 3 2 6 6 C 1.47709 * 126.51568 * 180.02562 * 5 4 3 7 7 O 1.21575 * 120.00330 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00152 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00099 * 180.02562 * 8 6 5 10 10 C 1.53501 * 114.20671 * 155.00122 * 9 8 6 11 11 N 1.47065 * 87.98741 * 87.71545 * 10 9 8 12 12 C 1.34775 * 136.05752 * 207.08848 * 11 10 9 13 13 O 1.21276 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00022 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31626 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47210 * 89.99890 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00121 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00210 * 20 18 16 24 24 C 1.47067 * 87.88381 * 27.34024 * 11 10 9 25 25 N 1.31813 * 106.96703 * 0.26890 * 5 4 3 26 26 N 1.28472 * 110.06847 * 359.55458 * 25 5 4 27 27 H 0.96996 * 124.88254 * 180.20661 * 26 25 5 28 28 H 1.09004 * 109.46832 * 299.99985 * 1 2 3 29 29 H 1.09000 * 109.47389 * 59.99802 * 1 2 3 30 30 H 1.08996 * 109.47633 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46832 * 240.00015 * 2 1 3 32 32 H 1.08999 * 109.47274 * 120.00740 * 2 1 3 33 33 H 1.07998 * 127.24957 * 0.03161 * 4 3 2 34 34 H 0.97002 * 119.99788 * 0.02562 * 8 6 5 35 35 H 1.09000 * 113.28654 * 21.92894 * 9 8 6 36 36 H 1.09001 * 113.46643 * 332.93246 * 10 9 8 37 37 H 1.08996 * 113.46488 * 202.49706 * 10 9 8 38 38 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 39 39 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 40 40 H 0.97004 * 120.00604 * 179.97438 * 19 18 16 41 41 H 1.09010 * 113.46411 * 87.43777 * 24 11 10 42 42 H 1.08997 * 113.47100 * 217.87349 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2105 2.2095 1.0856 5 6 2.6922 3.4414 0.5831 6 6 3.0419 4.6376 1.3760 7 8 2.9240 4.6209 2.5859 8 7 3.4907 5.7482 0.7580 9 6 3.8381 6.9344 1.5444 10 6 4.8573 7.8616 0.8680 11 7 3.7286 8.5365 0.2096 12 6 3.5437 9.2277 -0.9325 13 8 4.4727 9.4036 -1.6921 14 6 2.1829 9.7832 -1.2651 15 16 2.2576 10.6537 -2.8503 16 6 0.5827 11.1835 -2.9876 17 1 -0.1264 10.9390 -2.2106 18 6 0.1762 11.9204 -4.0913 19 7 1.0417 12.2230 -5.0357 20 14 -1.5996 12.4815 -4.2373 21 1 -1.7511 13.8152 -3.6022 22 1 -1.9743 12.5706 -5.6715 23 1 -2.4851 11.5045 -3.5541 24 6 2.8921 8.1306 1.3490 25 7 2.7644 3.3204 -0.7274 26 7 2.3881 2.1446 -1.0830 27 1 2.3599 1.8243 -1.9981 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0243 1.9526 2.1180 34 1 3.5837 5.7620 -0.2074 35 1 4.0615 6.7097 2.5873 36 1 5.5196 7.3453 0.1731 37 1 5.3956 8.4997 1.5688 38 1 1.8729 10.4773 -0.4840 39 1 1.4637 8.9669 -1.3320 40 1 0.7575 12.7377 -5.8073 41 1 2.9123 8.8397 2.1767 42 1 1.8800 7.8435 1.0640 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688593304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:59 Heat of formation + Delta-G solvation = 9.487844 kcal Electronic energy + Delta-G solvation = -25566.694578 eV Core-core repulsion = 21674.834655 eV Total energy + Delta-G solvation = -3891.859923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.73333 -41.76098 -40.17115 -38.80186 -35.31985 -34.73224 -34.61670 -32.92397 -31.84046 -30.31859 -29.12796 -27.69238 -26.96146 -25.59152 -24.64666 -22.64064 -22.06752 -21.29588 -20.39420 -19.54022 -18.67715 -18.25549 -17.91919 -17.34492 -16.95812 -16.90210 -16.78439 -16.58744 -15.88480 -15.56122 -15.35644 -15.28161 -14.95783 -14.69849 -14.57050 -14.19975 -14.16686 -13.71807 -13.50794 -13.31882 -13.21665 -13.07368 -12.91368 -12.61869 -12.51231 -12.12177 -12.09854 -11.76746 -11.74211 -11.40683 -11.17138 -10.97877 -10.53885 -10.33523 -10.19566 -9.98631 -9.83513 -8.71365 -8.37581 -6.16580 0.43942 1.08745 1.17954 1.40269 1.40464 1.51507 1.54441 1.77181 1.96076 2.11335 2.24362 2.25737 2.96335 3.14519 3.28726 3.34429 3.58799 3.66429 3.88588 3.96973 4.14232 4.26357 4.31937 4.41328 4.41628 4.47041 4.51243 4.58606 4.61883 4.67807 4.76046 4.80603 4.84118 5.07730 5.19149 5.28853 5.37700 5.38347 5.40642 6.04959 6.16683 6.29505 6.54531 6.80098 7.03303 7.03490 7.06385 8.71744 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.002456 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.493702 B =11397.674651 C =13076.164009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C 0.034 3.966 4 C -0.195 4.195 5 C -0.039 4.039 6 C 0.612 3.388 7 O -0.555 6.555 8 N -0.695 5.695 9 C 0.117 3.883 10 C 0.099 3.901 11 N -0.652 5.652 12 C 0.562 3.438 13 O -0.566 6.566 14 C -0.119 4.119 15 S -0.146 6.146 16 C -0.547 4.547 17 H 0.080 0.920 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 1.000 3.000 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.259 1.259 24 C 0.086 3.914 25 N -0.276 5.276 26 N -0.366 5.366 27 H 0.459 0.541 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.168 0.832 34 H 0.410 0.590 35 H 0.150 0.850 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.272 0.728 41 H 0.132 0.868 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -26.399 15.891 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 C -0.092 4.092 4 C -0.223 4.223 5 C -0.199 4.199 6 C 0.398 3.602 7 O -0.431 6.431 8 N -0.345 5.345 9 C 0.011 3.989 10 C -0.024 4.024 11 N -0.389 5.389 12 C 0.351 3.649 13 O -0.444 6.444 14 C -0.270 4.270 15 S 0.081 5.919 16 C -0.695 4.695 17 H 0.098 0.902 18 C -0.191 4.191 19 N -0.546 5.546 20 Si 0.821 3.179 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.183 1.183 24 C -0.037 4.037 25 N -0.113 5.113 26 N -0.083 5.083 27 H 0.307 0.693 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.185 0.815 34 H 0.245 0.755 35 H 0.168 0.832 36 H 0.094 0.906 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.150 0.850 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.446 -25.331 14.360 29.220 hybrid contribution -1.987 0.074 -0.005 1.988 sum 0.460 -25.256 14.355 29.054 Atomic orbital electron populations 1.21789 0.93835 1.03209 1.01976 1.20292 0.96372 0.86448 1.05884 1.21948 1.03096 0.97947 0.86242 1.21700 1.07646 0.92026 1.00893 1.21875 1.10316 0.97277 0.90398 1.16995 0.75840 0.81288 0.86064 1.90769 1.54879 1.83553 1.13926 1.45484 1.65699 1.11935 1.11355 1.22326 0.95319 0.83420 0.97864 1.23607 0.91113 0.92352 0.95288 1.49708 1.16283 1.54346 1.18557 1.19543 0.89172 0.76216 0.79940 1.90693 1.44660 1.58903 1.50176 1.23257 0.97428 1.03454 1.02879 1.85532 1.16050 1.68508 1.21801 1.23169 0.95120 1.40743 1.10465 0.90174 1.26139 1.03908 0.94980 0.94068 1.70177 1.36948 1.37482 1.10042 0.84942 0.76214 0.78889 0.77856 1.19165 1.20083 1.18336 1.23927 0.96907 0.95015 0.87857 1.73552 1.18876 1.04059 1.14842 1.43452 1.46168 1.07591 1.11065 0.69346 0.92873 0.93226 0.90003 0.88299 0.87599 0.81460 0.75484 0.83236 0.90575 0.85147 0.87720 0.88258 0.91891 0.85026 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 71.98 0.71 -0.18 16 2 C -0.05 -0.26 6.49 29.85 0.19 -0.07 16 3 C 0.03 0.43 6.48 41.40 0.27 0.70 16 4 C -0.19 -3.53 10.73 22.41 0.24 -3.29 16 5 C -0.04 -0.88 7.13 42.46 0.30 -0.58 16 6 C 0.61 14.75 7.83 86.75 0.68 15.43 16 7 O -0.55 -15.39 16.52 -3.95 -0.07 -15.45 16 8 N -0.70 -14.84 5.40 -444.51 -2.40 -17.24 16 9 C 0.12 2.02 4.61 45.55 0.21 2.23 16 10 C 0.10 1.90 8.38 83.18 0.70 2.60 16 11 N -0.65 -17.73 3.69 -857.85 -3.16 -20.89 16 12 C 0.56 22.14 8.10 87.66 0.71 22.85 16 13 O -0.57 -27.51 16.64 -3.02 -0.05 -27.56 16 14 C -0.12 -5.04 5.98 71.24 0.43 -4.61 16 15 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 16 C -0.55 -31.90 9.50 67.95 0.65 -31.26 16 17 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 18 C 0.01 0.80 5.49 84.86 0.47 1.27 16 19 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 20 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 C 0.09 1.61 8.26 83.26 0.69 2.30 16 25 N -0.28 -5.86 11.92 -48.18 -0.57 -6.44 16 26 N -0.37 -5.13 6.83 -47.93 -0.33 -5.46 16 27 H 0.46 3.32 8.96 -219.99 -1.97 1.35 16 28 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 0.12 8.14 -2.38 -0.02 0.10 16 32 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.41 9.45 8.49 -92.71 -0.79 8.66 16 35 H 0.15 2.10 7.45 -2.39 -0.02 2.08 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 39 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 40 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 41 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -86.11 383.16 -0.88 -86.99 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -1.69 Total: 18.18 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.24 Total: 7.39 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -6.18 Total: -106.17 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.12 Total: -43.01 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -86.11 -0.88 -86.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688593304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.480 kcal (2) G-P(sol) polarization free energy of solvation -86.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds