Wall clock time and date at job start Tue Mar 31 2020 20:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35562 * 125.82546 * 2 1 4 4 N 1.35408 * 107.16154 * 179.77485 * 3 2 1 5 5 H 0.96999 * 126.44379 * 180.22180 * 4 3 2 6 6 C 1.36672 * 107.12061 * 0.36157 * 4 3 2 7 7 C 1.47407 * 125.86410 * 179.90019 * 6 4 3 8 8 O 1.21611 * 119.99846 * 359.71010 * 7 6 4 9 9 N 1.34769 * 119.99835 * 179.71840 * 7 6 4 10 10 C 1.46503 * 119.99974 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47355 * 184.97642 * 10 9 7 12 12 H 1.09003 * 112.78279 * 314.88665 * 11 10 9 13 13 C 1.53755 * 113.55226 * 85.74085 * 11 10 9 14 14 C 1.53500 * 83.25862 * 140.99071 * 13 11 10 15 15 N 1.47070 * 113.46947 * 184.10333 * 11 10 9 16 16 C 1.34769 * 136.05848 * 38.14049 * 15 11 10 17 17 O 1.21288 * 119.99831 * 354.63927 * 16 15 11 18 18 C 1.50698 * 120.00200 * 174.64564 * 16 15 11 19 19 S 1.81004 * 109.47177 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00009 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00305 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00055 * 180.27708 * 20 19 18 23 23 N 1.31633 * 119.99584 * 359.72013 * 22 20 19 24 24 Si 1.86800 * 120.00095 * 179.72403 * 22 20 19 25 25 H 1.48497 * 109.46900 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47055 * 119.99716 * 24 22 20 27 27 H 1.48500 * 109.46924 * 240.00033 * 24 22 20 28 28 N 1.31620 * 108.26810 * 359.63337 * 6 4 3 29 29 H 1.09002 * 109.46893 * 269.97132 * 1 2 3 30 30 H 1.09002 * 109.47263 * 29.96789 * 1 2 3 31 31 H 1.08998 * 109.47582 * 149.97667 * 1 2 3 32 32 H 1.08000 * 126.42234 * 359.97438 * 3 2 1 33 33 H 0.97000 * 120.00235 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47114 * 64.97644 * 10 9 7 35 35 H 1.08995 * 109.47290 * 304.97639 * 10 9 7 36 36 H 1.08999 * 114.39452 * 27.42469 * 13 11 10 37 37 H 1.09004 * 114.26885 * 254.53986 * 13 11 10 38 38 H 1.08998 * 113.46473 * 218.98786 * 14 13 11 39 39 H 1.08996 * 113.52271 * 88.55254 * 14 13 11 40 40 H 1.08996 * 109.47639 * 59.99297 * 18 16 15 41 41 H 1.09001 * 109.46871 * 299.99064 * 18 16 15 42 42 H 0.96997 * 119.99362 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3004 1.0991 0.0000 4 7 3.5833 0.6658 0.0051 5 1 4.3789 1.2207 0.0094 6 6 3.5465 -0.7004 -0.0001 7 6 4.7174 -1.5958 0.0006 8 8 5.8402 -1.1286 0.0009 9 7 4.5436 -2.9323 0.0007 10 6 5.7074 -3.8223 0.0009 11 6 5.2395 -5.2736 -0.1241 12 1 4.3987 -5.5039 0.5302 13 6 5.0263 -5.7274 -1.5776 14 6 5.6412 -7.0382 -1.0679 15 7 6.3345 -6.2515 -0.0367 16 6 7.4703 -6.3753 0.6781 17 8 7.8229 -5.4799 1.4162 18 6 8.3023 -7.6263 0.5601 19 16 9.7525 -7.4900 1.6346 20 6 10.5217 -9.0412 1.3086 21 1 10.0684 -9.7336 0.6147 22 6 11.7072 -9.3761 1.9484 23 7 12.2595 -8.5324 2.7945 24 14 12.5187 -11.0240 1.6086 25 1 11.7038 -11.7839 0.6269 26 1 13.8791 -10.8013 1.0566 27 1 12.6177 -11.7969 2.8727 28 7 2.2860 -1.0792 -0.0001 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 1.9711 2.1277 -0.0004 33 1 3.6481 -3.3050 0.0008 34 1 6.2600 -3.6976 0.9321 35 1 6.3539 -3.5752 -0.8411 36 1 5.6397 -5.2003 -2.3083 37 1 3.9801 -5.8095 -1.8724 38 1 6.3168 -7.5076 -1.7830 39 1 4.9070 -7.7343 -0.6624 40 1 8.6264 -7.7511 -0.4730 41 1 7.7067 -8.4883 0.8608 42 1 13.0880 -8.7663 3.2412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689531696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:05 Heat of formation + Delta-G solvation = 25.093213 kcal Electronic energy + Delta-G solvation = -25392.762405 eV Core-core repulsion = 21501.579182 eV Total energy + Delta-G solvation = -3891.183224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.66102 -40.58887 -39.36269 -37.52211 -35.04223 -33.60400 -32.42903 -31.82477 -30.72628 -28.89945 -28.14635 -27.24172 -25.47788 -24.30902 -22.80382 -22.11501 -20.94504 -20.66933 -19.43683 -18.59734 -17.70745 -16.89132 -16.70018 -16.36154 -16.16432 -15.47794 -15.23580 -14.94149 -14.80368 -14.50636 -14.36892 -13.99464 -13.86710 -13.66250 -13.46450 -13.16234 -12.91946 -12.66623 -12.65614 -12.50978 -12.11732 -11.91803 -11.64741 -11.06974 -11.03226 -10.89850 -10.75918 -10.72223 -10.54946 -10.53951 -9.81421 -9.51083 -9.23995 -9.07423 -8.82237 -8.66488 -8.23225 -6.50334 -6.21650 -3.92381 0.99056 2.14179 2.15172 2.68187 3.01909 3.07532 3.18590 3.21763 3.28074 3.31786 3.56937 3.88351 4.07732 4.20072 4.48931 4.55494 4.63296 4.67501 4.77894 4.81015 4.93962 5.13568 5.17186 5.29568 5.30868 5.33973 5.48194 5.50478 5.53019 5.54320 5.62554 5.78763 5.84475 5.96118 5.96756 6.13694 6.14863 6.22198 6.70141 7.05626 7.43521 7.59938 7.80283 7.84991 8.35468 8.51679 9.23647 10.85855 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028400 B = 0.001865 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.695374 B =15011.395906 C =15691.530710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.002 4.002 3 C -0.024 4.024 4 N -0.523 5.523 5 H 0.432 0.568 6 C 0.151 3.849 7 C 0.605 3.395 8 O -0.534 6.534 9 N -0.699 5.699 10 C 0.113 3.887 11 C 0.123 3.877 12 H 0.098 0.902 13 C -0.152 4.152 14 C 0.101 3.899 15 N -0.646 5.646 16 C 0.561 3.439 17 O -0.509 6.509 18 C -0.144 4.144 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 N -0.441 5.441 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.187 0.813 33 H 0.411 0.589 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.063 14.867 -10.519 31.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.136 4.136 3 C -0.163 4.163 4 N -0.125 5.125 5 H 0.271 0.729 6 C -0.111 4.111 7 C 0.388 3.612 8 O -0.410 6.410 9 N -0.351 5.351 10 C -0.010 4.010 11 C 0.019 3.981 12 H 0.116 0.884 13 C -0.189 4.189 14 C -0.022 4.022 15 N -0.386 5.386 16 C 0.351 3.649 17 O -0.382 6.382 18 C -0.295 4.295 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 N -0.165 5.165 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.204 0.796 33 H 0.247 0.753 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.534 15.653 -9.147 30.506 hybrid contribution 0.326 -1.161 -0.950 1.536 sum -24.207 14.492 -10.097 29.966 Atomic orbital electron populations 1.20067 0.86928 1.03015 1.02581 1.20919 0.97054 0.87937 1.07665 1.22762 0.82953 1.01138 1.09474 1.42901 1.09305 1.07572 1.52672 0.72869 1.22602 0.93683 0.82407 1.12377 1.16401 0.85522 0.81992 0.77253 1.90904 1.23695 1.75926 1.50428 1.45449 1.11069 1.04735 1.73837 1.21720 0.87274 0.87060 1.04995 1.22815 0.89763 0.89114 0.96434 0.88436 1.23638 1.02427 0.97159 0.95712 1.22896 0.95075 0.95119 0.89114 1.49763 1.20774 1.25256 1.42838 1.20014 0.78801 0.88452 0.77643 1.90727 1.69099 1.41192 1.37186 1.23476 1.02676 0.96940 1.06373 1.85434 1.18212 1.25512 1.54149 1.22901 1.11280 1.03141 1.31004 0.90861 1.25002 0.96080 0.98035 0.94493 1.70032 1.18853 1.35177 1.26168 0.86105 0.79049 0.82023 0.78247 1.19615 1.20548 1.20560 1.70087 0.99100 1.31045 1.16281 0.91111 0.91078 0.90850 0.79639 0.75281 0.88982 0.90104 0.88424 0.89068 0.89974 0.89664 0.89299 0.89260 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.42 36.00 0.38 0.04 16 2 C 0.00 -0.01 7.07 -83.00 -0.59 -0.60 16 3 C -0.02 -0.15 11.91 -16.93 -0.20 -0.35 16 4 N -0.52 -4.19 6.14 -10.78 -0.07 -4.25 16 5 H 0.43 2.67 8.96 -40.82 -0.37 2.30 16 6 C 0.15 1.62 7.95 -154.51 -1.23 0.39 16 7 C 0.61 7.63 7.81 -12.53 -0.10 7.53 16 8 O -0.53 -8.51 17.09 5.27 0.09 -8.42 16 9 N -0.70 -7.50 5.55 -61.39 -0.34 -7.84 16 10 C 0.11 1.44 5.40 -4.04 -0.02 1.41 16 11 C 0.12 1.29 4.09 -72.26 -0.30 1.00 16 12 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 13 C -0.15 -1.12 8.03 -26.08 -0.21 -1.33 16 14 C 0.10 0.92 8.41 -8.50 -0.07 0.85 16 15 N -0.65 -8.99 3.56 -177.27 -0.63 -9.62 16 16 C 0.56 10.87 8.02 -10.99 -0.09 10.78 16 17 O -0.51 -11.86 15.24 5.55 0.08 -11.77 16 18 C -0.14 -2.99 5.99 36.00 0.22 -2.77 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 21 H 0.07 1.99 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 24 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 N -0.44 -4.54 10.89 -7.50 -0.08 -4.62 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.19 0.43 8.06 -52.49 -0.42 0.01 16 33 H 0.41 3.49 8.16 -40.82 -0.33 3.15 16 34 H 0.09 1.52 7.05 -51.93 -0.37 1.16 16 35 H 0.08 1.11 7.90 -51.93 -0.41 0.70 16 36 H 0.10 0.77 7.97 -51.93 -0.41 0.35 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -38.75 380.74 -9.38 -48.13 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.66 Total: 1.78 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -2.01 Total: 3.87 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.39 Total: -52.00 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.19 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.75 -9.38 -48.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689531696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.225 kcal (2) G-P(sol) polarization free energy of solvation -38.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds