Wall clock time and date at job start Tue Mar 31 2020 20:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35562 * 125.82546 * 2 1 4 4 N 1.35408 * 107.16154 * 179.77485 * 3 2 1 5 5 H 0.96999 * 126.44379 * 180.22180 * 4 3 2 6 6 C 1.36672 * 107.12061 * 0.36157 * 4 3 2 7 7 C 1.47407 * 125.86410 * 179.90019 * 6 4 3 8 8 O 1.21611 * 119.99846 * 359.71010 * 7 6 4 9 9 N 1.34769 * 119.99835 * 179.71840 * 7 6 4 10 10 C 1.46503 * 119.99974 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47355 * 184.97642 * 10 9 7 12 12 H 1.09003 * 112.78279 * 314.88665 * 11 10 9 13 13 C 1.53755 * 113.55226 * 85.74085 * 11 10 9 14 14 C 1.53500 * 83.25862 * 140.99071 * 13 11 10 15 15 N 1.47070 * 113.46947 * 184.10333 * 11 10 9 16 16 C 1.34769 * 136.05848 * 38.14049 * 15 11 10 17 17 O 1.21288 * 119.99831 * 354.63927 * 16 15 11 18 18 C 1.50698 * 120.00200 * 174.64564 * 16 15 11 19 19 S 1.81004 * 109.47177 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00009 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00305 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00055 * 180.27708 * 20 19 18 23 23 N 1.31633 * 119.99584 * 359.72013 * 22 20 19 24 24 Si 1.86800 * 120.00095 * 179.72403 * 22 20 19 25 25 H 1.48497 * 109.46900 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47055 * 119.99716 * 24 22 20 27 27 H 1.48500 * 109.46924 * 240.00033 * 24 22 20 28 28 N 1.31620 * 108.26810 * 359.63337 * 6 4 3 29 29 H 1.09002 * 109.46893 * 269.97132 * 1 2 3 30 30 H 1.09002 * 109.47263 * 29.96789 * 1 2 3 31 31 H 1.08998 * 109.47582 * 149.97667 * 1 2 3 32 32 H 1.08000 * 126.42234 * 359.97438 * 3 2 1 33 33 H 0.97000 * 120.00235 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47114 * 64.97644 * 10 9 7 35 35 H 1.08995 * 109.47290 * 304.97639 * 10 9 7 36 36 H 1.08999 * 114.39452 * 27.42469 * 13 11 10 37 37 H 1.09004 * 114.26885 * 254.53986 * 13 11 10 38 38 H 1.08998 * 113.46473 * 218.98786 * 14 13 11 39 39 H 1.08996 * 113.52271 * 88.55254 * 14 13 11 40 40 H 1.08996 * 109.47639 * 59.99297 * 18 16 15 41 41 H 1.09001 * 109.46871 * 299.99064 * 18 16 15 42 42 H 0.96997 * 119.99362 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3004 1.0991 0.0000 4 7 3.5833 0.6658 0.0051 5 1 4.3789 1.2207 0.0094 6 6 3.5465 -0.7004 -0.0001 7 6 4.7174 -1.5958 0.0006 8 8 5.8402 -1.1286 0.0009 9 7 4.5436 -2.9323 0.0007 10 6 5.7074 -3.8223 0.0009 11 6 5.2395 -5.2736 -0.1241 12 1 4.3987 -5.5039 0.5302 13 6 5.0263 -5.7274 -1.5776 14 6 5.6412 -7.0382 -1.0679 15 7 6.3345 -6.2515 -0.0367 16 6 7.4703 -6.3753 0.6781 17 8 7.8229 -5.4799 1.4162 18 6 8.3023 -7.6263 0.5601 19 16 9.7525 -7.4900 1.6346 20 6 10.5217 -9.0412 1.3086 21 1 10.0684 -9.7336 0.6147 22 6 11.7072 -9.3761 1.9484 23 7 12.2595 -8.5324 2.7945 24 14 12.5187 -11.0240 1.6086 25 1 11.7038 -11.7839 0.6269 26 1 13.8791 -10.8013 1.0566 27 1 12.6177 -11.7969 2.8727 28 7 2.2860 -1.0792 -0.0001 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 1.9711 2.1277 -0.0004 33 1 3.6481 -3.3050 0.0008 34 1 6.2600 -3.6976 0.9321 35 1 6.3539 -3.5752 -0.8411 36 1 5.6397 -5.2003 -2.3083 37 1 3.9801 -5.8095 -1.8724 38 1 6.3168 -7.5076 -1.7830 39 1 4.9070 -7.7343 -0.6624 40 1 8.6264 -7.7511 -0.4730 41 1 7.7067 -8.4883 0.8608 42 1 13.0880 -8.7663 3.2412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689531696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:04 Heat of formation + Delta-G solvation = -5.387342 kcal Electronic energy + Delta-G solvation = -25394.084141 eV Core-core repulsion = 21501.579182 eV Total energy + Delta-G solvation = -3892.504960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.30973 -41.64112 -40.40258 -38.90364 -36.05378 -34.60994 -34.21897 -32.57585 -32.01822 -29.77639 -29.46480 -27.84364 -27.65331 -25.07882 -23.64356 -23.16904 -21.81417 -21.27143 -20.44518 -19.88299 -19.29064 -18.05241 -17.62211 -17.45868 -17.01466 -16.90995 -16.73418 -16.44448 -15.90762 -15.76126 -15.53104 -15.03302 -14.93713 -14.68570 -14.50059 -13.99818 -13.94264 -13.83538 -13.56622 -13.41555 -13.16977 -13.02291 -12.95737 -12.91799 -12.62827 -12.43474 -11.82693 -11.73760 -11.55867 -11.34738 -11.20565 -11.17911 -10.89225 -10.36606 -10.30152 -9.80292 -9.42103 -8.70878 -8.36844 -6.16035 0.23545 1.13482 1.35444 1.40496 1.46816 1.50761 1.53567 1.58735 1.97679 2.23755 2.25241 2.49880 2.97382 3.13293 3.18076 3.33204 3.62864 3.70011 3.91757 3.97389 4.01560 4.11013 4.23391 4.37793 4.43388 4.46446 4.56962 4.64244 4.70637 4.85261 4.93017 4.98492 4.99239 5.01071 5.12706 5.15763 5.31499 5.39569 5.65634 6.09873 6.17804 6.22401 6.59846 6.75014 6.94592 7.04099 7.09402 8.72853 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028400 B = 0.001865 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.695374 B =15011.395906 C =15691.530710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.026 4.026 3 C 0.002 3.998 4 N -0.519 5.519 5 H 0.438 0.562 6 C 0.113 3.887 7 C 0.602 3.398 8 O -0.580 6.580 9 N -0.683 5.683 10 C 0.123 3.877 11 C 0.120 3.880 12 H 0.125 0.875 13 C -0.126 4.126 14 C 0.096 3.904 15 N -0.649 5.649 16 C 0.556 3.444 17 O -0.565 6.565 18 C -0.117 4.117 19 S -0.155 6.155 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.002 2.998 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.273 1.273 28 N -0.451 5.451 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.231 0.769 33 H 0.424 0.576 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.456 14.077 -12.689 35.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.161 4.161 3 C -0.138 4.138 4 N -0.121 5.121 5 H 0.279 0.721 6 C -0.147 4.147 7 C 0.387 3.613 8 O -0.459 6.459 9 N -0.336 5.336 10 C -0.002 4.002 11 C 0.016 3.984 12 H 0.142 0.858 13 C -0.164 4.164 14 C -0.024 4.024 15 N -0.386 5.386 16 C 0.346 3.654 17 O -0.443 6.443 18 C -0.268 4.268 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.823 3.177 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.198 1.198 28 N -0.175 5.175 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.247 0.753 33 H 0.263 0.737 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.153 0.847 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.007 14.826 -11.370 33.668 hybrid contribution 1.144 -0.762 -0.338 1.415 sum -26.864 14.065 -11.709 32.505 Atomic orbital electron populations 1.20155 0.84807 1.04053 1.03221 1.21588 0.98548 0.87829 1.08099 1.23553 0.81657 1.02767 1.05795 1.43018 1.10452 1.06828 1.51834 0.72116 1.22136 0.93137 0.83267 1.16111 1.16751 0.85677 0.82571 0.76276 1.90868 1.25596 1.76717 1.52699 1.45253 1.11060 1.04157 1.73100 1.21440 0.87625 0.89216 1.01916 1.23226 0.88784 0.86673 0.99690 0.85766 1.23597 1.04852 0.95040 0.92894 1.23353 0.95190 0.96168 0.87734 1.49812 1.19735 1.27264 1.41809 1.19720 0.80420 0.87334 0.77970 1.90708 1.71028 1.42615 1.39981 1.23259 0.99751 0.98686 1.05072 1.85647 1.22915 1.26824 1.57379 1.23228 1.11767 1.03017 1.31282 0.89822 1.26181 0.96664 1.02502 0.93923 1.70203 1.19487 1.37721 1.27466 0.84861 0.77877 0.76378 0.78544 1.17861 1.19904 1.19848 1.70025 0.99045 1.32451 1.16002 0.90601 0.88539 0.91367 0.75252 0.73711 0.93600 0.91680 0.88820 0.84658 0.89198 0.86597 0.87692 0.87466 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.42 71.23 0.74 0.28 16 2 C -0.03 -0.36 7.07 41.75 0.30 -0.06 16 3 C 0.00 0.02 11.91 83.52 0.99 1.02 16 4 N -0.52 -7.82 6.14 -188.01 -1.16 -8.97 16 5 H 0.44 5.24 8.96 -92.71 -0.83 4.41 16 6 C 0.11 2.41 7.95 136.27 1.08 3.50 16 7 C 0.60 15.97 7.81 86.66 0.68 16.65 16 8 O -0.58 -19.94 17.09 -4.06 -0.07 -20.01 16 9 N -0.68 -15.03 5.55 -466.40 -2.59 -17.61 16 10 C 0.12 3.27 5.40 86.38 0.47 3.74 16 11 C 0.12 2.34 4.09 41.88 0.17 2.51 16 12 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 13 C -0.13 -1.42 8.03 31.02 0.25 -1.17 16 14 C 0.10 1.41 8.41 83.18 0.70 2.11 16 15 N -0.65 -17.41 3.56 -833.15 -2.97 -20.38 16 16 C 0.56 22.12 8.02 87.66 0.70 22.83 16 17 O -0.56 -28.16 15.24 -3.05 -0.05 -28.20 16 18 C -0.12 -4.88 5.99 71.24 0.43 -4.45 16 19 S -0.15 -8.93 20.57 -56.49 -1.16 -10.09 16 20 C -0.55 -31.81 9.50 67.96 0.65 -31.17 16 21 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 22 C 0.01 0.69 5.49 84.86 0.47 1.15 16 23 N -0.91 -57.21 13.22 21.65 0.29 -56.93 16 24 Si 1.00 44.23 29.55 68.60 2.03 46.25 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 N -0.45 -8.81 10.89 -177.64 -1.94 -10.75 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.23 0.00 8.06 -2.91 -0.02 -0.03 16 33 H 0.42 6.86 8.16 -92.71 -0.76 6.11 16 34 H 0.05 1.68 7.05 -2.39 -0.02 1.66 16 35 H 0.06 1.91 7.90 -2.39 -0.02 1.89 16 36 H 0.09 1.21 7.97 -2.39 -0.02 1.19 16 37 H 0.14 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 41 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 42 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -92.50 380.74 -0.50 -93.01 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.51 Total: 16.75 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 7.62 Total: 16.93 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -8.36 Total: -114.64 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -0.12 Total: -48.21 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.16 Total: -10.09 kcal Total: -92.50 -0.50 -93.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689531696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.618 kcal (2) G-P(sol) polarization free energy of solvation -92.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds