Wall clock time and date at job start Tue Mar 31 2020 20:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29515 * 121.53356 * 2 1 4 4 S 1.69478 * 107.84510 * 180.23801 * 3 2 1 5 5 C 1.72018 * 96.02773 * 359.72635 * 4 3 2 6 6 C 1.37900 * 105.36378 * 359.97438 * 5 4 3 7 7 C 1.47341 * 123.08436 * 180.02562 * 6 5 4 8 8 O 1.21616 * 119.99563 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00173 * 0.02562 * 7 6 5 10 10 C 1.46493 * 120.00128 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47399 * 180.02562 * 10 9 7 12 12 C 1.30999 * 120.00428 * 127.16113 * 11 10 9 13 13 C 1.50705 * 119.99829 * 7.55522 * 12 11 10 14 14 N 1.46896 * 109.46884 * 127.00691 * 13 12 11 15 15 C 1.46899 * 110.99738 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47202 * 180.02562 * 15 14 13 17 17 O 1.21300 * 119.99569 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00156 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99951 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00271 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00191 * 179.97438 * 19 18 16 22 22 N 1.31419 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47091 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47404 * 120.00055 * 23 21 19 26 26 H 1.48500 * 109.47148 * 240.00220 * 23 21 19 27 27 H 1.09000 * 109.46526 * 270.27043 * 1 2 3 28 28 H 1.08996 * 109.46980 * 30.26777 * 1 2 3 29 29 H 1.08994 * 109.46826 * 150.26893 * 1 2 3 30 30 H 1.07997 * 127.31740 * 180.02562 * 5 4 3 31 31 H 0.96997 * 119.99623 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.46933 * 60.00464 * 10 9 7 33 33 H 1.09009 * 109.47361 * 300.00659 * 10 9 7 34 34 H 1.08001 * 119.99633 * 306.88366 * 11 10 9 35 35 H 1.07995 * 120.00131 * 187.56277 * 12 11 10 36 36 H 1.08998 * 109.47105 * 247.01411 * 13 12 11 37 37 H 1.08999 * 109.47044 * 7.00732 * 13 12 11 38 38 H 1.00901 * 110.99708 * 56.05211 * 14 13 12 39 39 H 1.09003 * 109.47440 * 300.00375 * 15 14 13 40 40 H 1.08997 * 109.46908 * 60.00761 * 15 14 13 41 41 H 0.97002 * 120.00039 * 359.97438 * 18 16 15 42 42 H 0.97003 * 119.99718 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8310 0.7028 -0.0067 5 6 3.6018 -1.0020 -0.0014 6 6 2.2352 -1.1868 0.0060 7 6 1.6037 -2.5180 0.0130 8 8 0.3915 -2.6158 0.0189 9 7 2.3693 -3.6271 0.0128 10 6 1.7414 -4.9507 0.0203 11 6 2.8097 -6.0136 0.0191 12 6 2.7949 -6.9582 0.9266 13 6 1.6220 -7.0839 1.8644 14 7 1.1053 -8.4583 1.8208 15 6 -0.0411 -8.6186 2.7252 16 6 -0.5425 -10.0380 2.6541 17 8 0.0021 -10.8375 1.9223 18 7 -1.5958 -10.4190 3.4036 19 6 -2.0515 -11.7104 3.3392 20 1 -1.5668 -12.4223 2.6876 21 6 -3.1372 -12.1034 4.1123 22 7 -3.7268 -11.2373 4.9055 23 14 -3.7586 -13.8628 4.0241 24 1 -2.9294 -14.6330 3.0626 25 1 -3.6680 -14.4878 5.3681 26 1 -5.1727 -13.8662 3.5709 27 1 -0.3632 0.0049 1.0277 28 1 -0.3633 0.8875 -0.5180 29 1 -0.3633 -0.8924 -0.5096 30 1 4.3657 -1.7653 -0.0027 31 1 3.3361 -3.5490 0.0085 32 1 1.1171 -5.0616 -0.8662 33 1 1.1258 -5.0557 0.9138 34 1 3.5850 -5.9990 -0.7327 35 1 3.6234 -7.6469 1.0027 36 1 1.9414 -6.8477 2.8794 37 1 0.8375 -6.3910 1.5600 38 1 1.8316 -9.1246 2.0366 39 1 0.2672 -8.3933 3.7462 40 1 -0.8372 -7.9364 2.4271 41 1 -2.0310 -9.7797 3.9891 42 1 -4.4849 -11.5116 5.4449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699249493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:15 Heat of formation + Delta-G solvation = -4.057629 kcal Electronic energy + Delta-G solvation = -24813.345442 eV Core-core repulsion = 20920.898143 eV Total energy + Delta-G solvation = -3892.447299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75934 -38.69163 -38.31505 -37.01845 -35.20353 -33.94786 -33.22520 -31.86519 -31.20110 -29.91136 -28.08762 -26.43760 -24.88827 -24.50271 -23.17931 -21.62686 -20.19822 -19.59647 -19.19067 -18.32523 -17.84164 -17.35430 -16.62920 -16.02850 -15.94278 -15.49635 -15.22494 -15.03561 -14.66627 -14.47331 -14.36948 -14.02290 -13.79967 -13.65437 -13.63721 -12.99497 -12.81673 -12.73492 -12.69193 -12.47869 -11.87929 -11.80749 -11.55607 -11.49785 -11.19121 -11.05766 -10.90021 -10.34011 -10.30843 -10.22451 -10.18920 -9.70265 -9.51945 -9.31961 -9.10603 -8.47203 -8.06596 -7.95828 -6.41515 -3.82412 -0.11269 0.82773 1.24167 1.38835 1.73426 2.83746 2.91931 3.16776 3.27385 3.34699 3.90660 3.92045 4.12913 4.34202 4.40545 4.43969 4.57271 4.74933 4.77536 4.99537 5.07204 5.14605 5.25050 5.27957 5.29656 5.38213 5.48889 5.56521 5.65985 5.79145 5.82099 5.96853 6.03131 6.21345 6.25139 6.30057 6.52354 7.05862 7.14849 7.55747 7.60790 7.78970 8.06602 8.61218 9.18051 9.54382 10.05583 10.76266 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023144 B = 0.001556 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.551605 B =17988.968830 C =18849.851200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.167 3.833 3 N -0.469 5.469 4 S 0.292 5.708 5 C -0.176 4.176 6 C -0.209 4.209 7 C 0.583 3.417 8 O -0.523 6.523 9 N -0.717 5.717 10 C 0.141 3.859 11 C -0.186 4.186 12 C -0.107 4.107 13 C 0.068 3.932 14 N -0.663 5.663 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.191 0.809 31 H 0.398 0.602 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.038 0.962 37 H 0.086 0.914 38 H 0.350 0.650 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.178 24.149 -7.945 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.011 4.011 3 N -0.290 5.290 4 S 0.447 5.553 5 C -0.326 4.326 6 C -0.231 4.231 7 C 0.367 3.633 8 O -0.401 6.401 9 N -0.369 5.369 10 C 0.019 3.981 11 C -0.206 4.206 12 C -0.127 4.127 13 C -0.060 4.060 14 N -0.295 5.295 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.208 0.792 31 H 0.233 0.767 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.169 0.831 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.226 0.774 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.983 25.682 -8.859 32.039 hybrid contribution -0.303 -2.142 1.274 2.511 sum 16.679 23.540 -7.585 29.831 Atomic orbital electron populations 1.20961 0.85134 1.05301 1.04513 1.21510 0.99746 0.86590 0.93211 1.76530 1.00171 1.26156 1.26103 1.84138 1.10935 0.95363 1.64827 1.27442 0.99291 1.04999 1.00847 1.20421 0.92137 0.96135 1.14372 1.17288 0.86540 0.82870 0.76625 1.90771 1.13232 1.86466 1.49604 1.45823 1.10052 1.05625 1.75353 1.20564 0.94583 0.79188 1.03767 1.22642 1.00715 0.97820 0.99397 1.22868 0.97478 0.97424 0.94888 1.21300 0.95484 0.92333 0.96913 1.60110 1.10735 1.03126 1.55534 1.21701 0.94564 0.97572 0.94466 1.19781 0.83914 0.88959 0.84725 1.90524 1.59814 1.53983 1.42453 1.41868 1.27581 1.12087 1.38464 1.19761 1.12229 0.87206 1.23691 0.87839 1.25274 0.96639 0.99970 0.96114 1.69627 1.22999 1.34938 1.26703 0.85790 0.78570 0.81852 0.78068 1.19214 1.20785 1.20728 0.89571 0.90703 0.86979 0.79168 0.76729 0.90253 0.89622 0.86380 0.86494 0.94437 0.89590 0.83108 0.93784 0.89443 0.77429 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.51 36.01 0.34 -0.51 16 2 C 0.17 1.56 6.75 -83.19 -0.56 0.99 16 3 N -0.47 -4.46 11.97 32.50 0.39 -4.07 16 4 S 0.29 1.80 23.69 -107.50 -2.55 -0.75 16 5 C -0.18 -0.90 10.79 30.61 0.33 -0.57 16 6 C -0.21 -1.70 5.86 -105.94 -0.62 -2.32 16 7 C 0.58 5.56 7.78 -12.56 -0.10 5.46 16 8 O -0.52 -6.67 13.75 5.26 0.07 -6.60 16 9 N -0.72 -5.19 5.52 -62.59 -0.35 -5.54 16 10 C 0.14 1.24 5.76 -5.20 -0.03 1.21 16 11 C -0.19 -1.46 9.63 -36.03 -0.35 -1.81 16 12 C -0.11 -1.00 9.77 -36.02 -0.35 -1.36 16 13 C 0.07 0.79 5.77 -4.98 -0.03 0.76 16 14 N -0.66 -10.46 6.12 -116.34 -0.71 -11.17 16 15 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 16 C 0.44 10.44 7.82 -10.99 -0.09 10.35 16 17 O -0.58 -15.88 15.78 5.54 0.09 -15.79 16 18 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 23 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.11 1.10 5.64 -51.93 -0.29 0.81 16 30 H 0.19 0.26 7.20 -52.49 -0.38 -0.12 16 31 H 0.40 1.67 7.04 -40.82 -0.29 1.38 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.86 5.30 -51.92 -0.28 0.59 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 1.00 5.29 -51.93 -0.27 0.72 16 38 H 0.35 5.59 8.42 -39.29 -0.33 5.26 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -34.30 374.04 -8.55 -42.85 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.05 Total: 12.66 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.72 Total: 5.00 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.00 Total: -59.09 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.16 Total: -22.39 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.55 Total: -0.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.30 -8.55 -42.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699249493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.796 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds