Wall clock time and date at job start Tue Mar 31 2020 20:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29515 * 121.53356 * 2 1 4 4 S 1.69478 * 107.84510 * 180.23801 * 3 2 1 5 5 C 1.72018 * 96.02773 * 359.72635 * 4 3 2 6 6 C 1.37900 * 105.36378 * 359.97438 * 5 4 3 7 7 C 1.47341 * 123.08436 * 180.02562 * 6 5 4 8 8 O 1.21616 * 119.99563 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00173 * 0.02562 * 7 6 5 10 10 C 1.46493 * 120.00128 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47399 * 180.02562 * 10 9 7 12 12 C 1.30999 * 120.00428 * 127.16113 * 11 10 9 13 13 C 1.50705 * 119.99829 * 7.55522 * 12 11 10 14 14 N 1.46896 * 109.46884 * 127.00691 * 13 12 11 15 15 C 1.46899 * 110.99738 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47202 * 180.02562 * 15 14 13 17 17 O 1.21300 * 119.99569 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00156 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99951 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00271 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00191 * 179.97438 * 19 18 16 22 22 N 1.31419 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47091 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47404 * 120.00055 * 23 21 19 26 26 H 1.48500 * 109.47148 * 240.00220 * 23 21 19 27 27 H 1.09000 * 109.46526 * 270.27043 * 1 2 3 28 28 H 1.08996 * 109.46980 * 30.26777 * 1 2 3 29 29 H 1.08994 * 109.46826 * 150.26893 * 1 2 3 30 30 H 1.07997 * 127.31740 * 180.02562 * 5 4 3 31 31 H 0.96997 * 119.99623 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.46933 * 60.00464 * 10 9 7 33 33 H 1.09009 * 109.47361 * 300.00659 * 10 9 7 34 34 H 1.08001 * 119.99633 * 306.88366 * 11 10 9 35 35 H 1.07995 * 120.00131 * 187.56277 * 12 11 10 36 36 H 1.08998 * 109.47105 * 247.01411 * 13 12 11 37 37 H 1.08999 * 109.47044 * 7.00732 * 13 12 11 38 38 H 1.00901 * 110.99708 * 56.05211 * 14 13 12 39 39 H 1.09003 * 109.47440 * 300.00375 * 15 14 13 40 40 H 1.08997 * 109.46908 * 60.00761 * 15 14 13 41 41 H 0.97002 * 120.00039 * 359.97438 * 18 16 15 42 42 H 0.97003 * 119.99718 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8310 0.7028 -0.0067 5 6 3.6018 -1.0020 -0.0014 6 6 2.2352 -1.1868 0.0060 7 6 1.6037 -2.5180 0.0130 8 8 0.3915 -2.6158 0.0189 9 7 2.3693 -3.6271 0.0128 10 6 1.7414 -4.9507 0.0203 11 6 2.8097 -6.0136 0.0191 12 6 2.7949 -6.9582 0.9266 13 6 1.6220 -7.0839 1.8644 14 7 1.1053 -8.4583 1.8208 15 6 -0.0411 -8.6186 2.7252 16 6 -0.5425 -10.0380 2.6541 17 8 0.0021 -10.8375 1.9223 18 7 -1.5958 -10.4190 3.4036 19 6 -2.0515 -11.7104 3.3392 20 1 -1.5668 -12.4223 2.6876 21 6 -3.1372 -12.1034 4.1123 22 7 -3.7268 -11.2373 4.9055 23 14 -3.7586 -13.8628 4.0241 24 1 -2.9294 -14.6330 3.0626 25 1 -3.6680 -14.4878 5.3681 26 1 -5.1727 -13.8662 3.5709 27 1 -0.3632 0.0049 1.0277 28 1 -0.3633 0.8875 -0.5180 29 1 -0.3633 -0.8924 -0.5096 30 1 4.3657 -1.7653 -0.0027 31 1 3.3361 -3.5490 0.0085 32 1 1.1171 -5.0616 -0.8662 33 1 1.1258 -5.0557 0.9138 34 1 3.5850 -5.9990 -0.7327 35 1 3.6234 -7.6469 1.0027 36 1 1.9414 -6.8477 2.8794 37 1 0.8375 -6.3910 1.5600 38 1 1.8316 -9.1246 2.0366 39 1 0.2672 -8.3933 3.7462 40 1 -0.8372 -7.9364 2.4271 41 1 -2.0310 -9.7797 3.9891 42 1 -4.4849 -11.5116 5.4449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699249493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:14 Heat of formation + Delta-G solvation = -31.288913 kcal Electronic energy + Delta-G solvation = -24814.526279 eV Core-core repulsion = 20920.898143 eV Total energy + Delta-G solvation = -3893.628136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41656 -40.17828 -39.30072 -37.97896 -36.29741 -35.78524 -34.16025 -33.25738 -32.48551 -30.56461 -29.30577 -27.50001 -26.36767 -25.17244 -24.46787 -22.30169 -21.20906 -20.82173 -20.09774 -19.85614 -19.00229 -18.05135 -17.75127 -17.20195 -16.85801 -16.66191 -16.41900 -16.08824 -15.90863 -15.59525 -15.27114 -15.22866 -15.06926 -14.69155 -14.38382 -14.29630 -13.99298 -13.52658 -13.46764 -13.35789 -13.27601 -13.19080 -12.95647 -12.72562 -12.40695 -12.35413 -12.10953 -11.78397 -11.66191 -11.51755 -10.96529 -10.83748 -10.41334 -10.36011 -10.03506 -10.00748 -9.67908 -9.26051 -8.47161 -5.96187 -0.61314 0.34350 0.67978 0.72655 1.04553 1.36885 1.42243 1.56710 2.04116 2.16549 2.26319 2.30638 3.02246 3.20078 3.45902 3.61593 3.73082 3.88202 3.89595 4.08706 4.25792 4.30066 4.32666 4.40650 4.45695 4.48958 4.55533 4.63996 4.69055 4.72298 4.80656 4.99033 5.14556 5.36651 5.40891 5.59698 5.59933 5.81287 5.89325 6.08476 6.40247 6.48984 6.59173 7.11909 7.15946 7.55327 8.10251 8.70469 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023144 B = 0.001556 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.551605 B =17988.968830 C =18849.851200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.154 3.846 3 N -0.509 5.509 4 S 0.328 5.672 5 C -0.146 4.146 6 C -0.235 4.235 7 C 0.581 3.419 8 O -0.565 6.565 9 N -0.701 5.701 10 C 0.141 3.859 11 C -0.163 4.163 12 C -0.125 4.125 13 C 0.070 3.930 14 N -0.678 5.678 15 C 0.064 3.936 16 C 0.438 3.562 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.272 1.272 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.234 0.766 31 H 0.416 0.584 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.347 0.653 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.396 0.604 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.231 24.650 -8.002 32.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.023 4.023 3 N -0.330 5.330 4 S 0.484 5.516 5 C -0.295 4.295 6 C -0.257 4.257 7 C 0.367 3.633 8 O -0.445 6.445 9 N -0.353 5.353 10 C 0.018 3.982 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.058 4.058 14 N -0.311 5.311 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.197 1.197 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.250 0.750 31 H 0.254 0.746 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.165 0.835 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.230 0.770 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.065 26.212 -8.905 33.613 hybrid contribution -0.819 -2.191 1.249 2.652 sum 18.245 24.021 -7.656 31.121 Atomic orbital electron populations 1.20869 0.85761 1.04776 1.04244 1.21594 0.99900 0.87200 0.93574 1.76368 1.02397 1.26944 1.27311 1.84016 1.08420 0.95542 1.63635 1.27941 0.98796 1.05633 0.97174 1.20269 0.93275 0.94952 1.17168 1.17519 0.86167 0.83720 0.75926 1.90756 1.15070 1.87066 1.51644 1.45615 1.10833 1.04487 1.74383 1.20458 0.94947 0.80269 1.02548 1.22756 1.00284 0.96358 0.98764 1.22829 0.97319 0.98826 0.95411 1.21338 0.96383 0.89681 0.98388 1.60104 1.10421 1.05376 1.55167 1.21546 0.95752 0.93124 0.96462 1.20858 0.82600 0.91106 0.82925 1.90489 1.60732 1.55957 1.43734 1.41947 1.28389 1.11530 1.39189 1.19726 1.13589 0.88276 1.24802 0.90221 1.26072 0.96152 1.03911 0.95240 1.69687 1.23208 1.36510 1.26770 0.84843 0.78034 0.76959 0.78327 1.19715 1.19509 1.19694 0.89779 0.90205 0.88387 0.74971 0.74638 0.91518 0.91040 0.83640 0.85351 0.93295 0.89791 0.83458 0.91389 0.88114 0.76978 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.51 71.24 0.68 -1.09 16 2 C 0.15 2.85 6.75 43.14 0.29 3.14 16 3 N -0.51 -9.36 11.97 -51.09 -0.61 -9.98 16 4 S 0.33 3.29 23.69 -56.49 -1.34 1.95 16 5 C -0.15 -1.03 10.79 67.74 0.73 -0.30 16 6 C -0.24 -3.52 5.86 -20.72 -0.12 -3.64 16 7 C 0.58 10.64 7.78 86.64 0.67 11.32 16 8 O -0.56 -14.82 13.75 -4.08 -0.06 -14.88 16 9 N -0.70 -8.66 5.52 -470.20 -2.59 -11.25 16 10 C 0.14 2.26 5.76 85.63 0.49 2.76 16 11 C -0.16 -2.09 9.63 25.65 0.25 -1.85 16 12 C -0.12 -2.05 9.77 25.65 0.25 -1.79 16 13 C 0.07 1.51 5.77 85.56 0.49 2.00 16 14 N -0.68 -20.81 6.12 -521.98 -3.19 -24.01 16 15 C 0.06 2.18 6.17 85.56 0.53 2.71 16 16 C 0.44 20.99 7.82 87.66 0.69 21.68 16 17 O -0.62 -34.67 15.78 -3.09 -0.05 -34.72 16 18 N -0.57 -29.75 5.29 -306.98 -1.62 -31.37 16 19 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 22 N -0.92 -50.11 13.05 21.66 0.28 -49.83 16 23 Si 0.99 43.18 29.55 68.60 2.03 45.20 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 2.10 5.64 -2.39 -0.01 2.08 16 30 H 0.23 -0.59 7.20 -2.91 -0.02 -0.61 16 31 H 0.42 1.95 7.04 -92.71 -0.65 1.30 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.39 5.30 -2.38 -0.01 1.38 16 34 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.86 5.29 -2.39 -0.01 1.85 16 38 H 0.35 10.89 8.42 -89.69 -0.76 10.13 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.40 19.55 7.90 -92.71 -0.73 18.81 16 42 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -76.72 374.04 -1.96 -78.67 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -1.03 Total: 33.92 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 6.23 Total: 16.29 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -7.74 Total: -126.43 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.10 Total: -49.60 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.34 Total: 1.95 kcal Total: -76.72 -1.96 -78.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699249493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.385 kcal (2) G-P(sol) polarization free energy of solvation -76.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds