Wall clock time and date at job start Tue Mar 31 2020 20:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38549 * 120.01258 * 2 1 4 4 C 1.40077 * 117.81558 * 180.02562 * 3 2 1 5 5 C 1.48131 * 121.14600 * 179.97438 * 4 3 2 6 6 O 1.21513 * 119.99892 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00066 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00259 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47603 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47444 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47208 * 179.97438 * 10 9 8 12 12 C 1.34780 * 119.99915 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00035 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99997 * 180.02562 * 12 11 10 15 15 S 1.81000 * 109.47188 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99832 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00070 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00000 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99724 * 359.97438 * 18 16 15 21 21 H 1.48492 * 109.46981 * 90.00328 * 20 18 16 22 22 H 1.48502 * 109.47103 * 210.00449 * 20 18 16 23 23 H 1.48505 * 109.47060 * 330.00327 * 20 18 16 24 24 C 1.39763 * 117.70811 * 0.02562 * 4 3 2 25 25 N 1.31894 * 119.65827 * 359.97438 * 24 4 3 26 26 N 1.28284 * 122.32680 * 359.97438 * 25 24 4 27 27 H 1.08998 * 109.47434 * 269.97597 * 1 2 3 28 28 H 1.09001 * 109.46885 * 29.98003 * 1 2 3 29 29 H 1.09004 * 109.47045 * 149.97737 * 1 2 3 30 30 H 1.07992 * 121.09374 * 0.02562 * 3 2 1 31 31 H 0.96997 * 120.00284 * 359.97438 * 7 5 4 32 32 H 1.09001 * 109.46851 * 300.00223 * 8 7 5 33 33 H 1.09004 * 109.46924 * 59.99903 * 8 7 5 34 34 H 1.08999 * 109.46699 * 300.00114 * 9 8 7 35 35 H 1.08996 * 109.47207 * 59.99713 * 9 8 7 36 36 H 1.09001 * 109.46683 * 300.00026 * 10 9 8 37 37 H 1.08996 * 109.47400 * 59.99529 * 10 9 8 38 38 H 0.96994 * 119.99699 * 0.02562 * 11 10 9 39 39 H 1.08999 * 109.46562 * 299.99839 * 14 12 11 40 40 H 1.08996 * 109.47498 * 59.99531 * 14 12 11 41 41 H 0.97004 * 119.99786 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.17263 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4140 2.3835 -0.0012 6 8 3.8688 3.4695 -0.0007 7 7 5.7594 2.3049 -0.0022 8 6 6.5647 3.5288 -0.0034 9 6 8.0501 3.1620 -0.0038 10 6 8.8910 4.4401 -0.0043 11 7 10.3133 4.0889 -0.0041 12 6 11.2474 5.0605 -0.0050 13 8 10.9105 6.2256 -0.0066 14 6 12.7104 4.6993 -0.0054 15 16 13.7052 6.2114 -0.0059 16 6 15.3230 5.5132 -0.0055 17 1 15.4482 4.4405 -0.0046 18 6 16.4365 6.3418 -0.0051 19 7 17.6450 5.8203 -0.0053 20 14 16.2199 8.1973 -0.0059 21 1 16.1619 8.6894 1.3938 22 1 17.3672 8.8293 -0.7057 23 1 14.9585 8.5481 -0.7068 24 6 4.2017 -0.1153 -0.0016 25 7 3.4484 -1.1980 -0.0016 26 7 2.1668 -1.1419 -0.0001 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6782 2.1452 0.0004 31 1 6.1946 1.4381 -0.0022 32 1 6.3344 4.1143 -0.8934 33 1 6.3358 4.1151 0.8866 34 1 8.2799 2.5767 0.8865 35 1 8.2793 2.5755 -0.8934 36 1 8.6611 5.0258 -0.8944 37 1 8.6617 5.0264 0.8855 38 1 10.5827 3.1571 -0.0040 39 1 12.9402 4.1139 0.8849 40 1 12.9396 4.1127 -0.8950 41 1 18.4232 6.3994 -0.0047 42 1 5.2781 -0.2031 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703318274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:52 Heat of formation + Delta-G solvation = -24.665449 kcal Electronic energy + Delta-G solvation = -24189.378732 eV Core-core repulsion = 20296.037811 eV Total energy + Delta-G solvation = -3893.340921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.91837 -40.12172 -39.36114 -36.64060 -34.98357 -34.52939 -33.91403 -32.46911 -31.77902 -29.38899 -28.99380 -26.67232 -25.64649 -24.84460 -24.27154 -22.33567 -21.26211 -20.55769 -18.78368 -18.24967 -17.87778 -16.98764 -16.62376 -16.61734 -16.39817 -15.99985 -15.78915 -15.39340 -15.14293 -14.95309 -14.67555 -14.23951 -14.06828 -13.82881 -13.61251 -13.33432 -13.27565 -13.07084 -12.83756 -12.62100 -12.17681 -12.11751 -11.66487 -11.51689 -11.29505 -11.13355 -11.03158 -10.91258 -10.64551 -10.45350 -10.27624 -9.88724 -9.80377 -9.61387 -9.10503 -9.01987 -8.53817 -6.95461 -6.31731 -4.03918 -0.36399 0.14763 2.07351 2.21330 2.72733 2.90024 2.92449 3.24087 3.26693 3.31620 3.48365 3.56182 3.59940 3.73696 3.84830 4.11009 4.30440 4.35409 4.41808 4.41958 4.49053 4.66111 4.72628 4.87849 4.98307 5.03189 5.07455 5.11727 5.12675 5.22768 5.27736 5.34759 5.48606 5.60207 5.62698 5.72322 5.73141 5.95953 6.40247 6.66268 7.37383 7.50111 7.91216 7.97002 8.38463 8.40659 9.14465 10.77469 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.043195 B = 0.001358 C = 0.001319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.069697 B =20613.319766 C =21225.037646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.070 3.930 3 C -0.057 4.057 4 C -0.129 4.129 5 C 0.563 3.437 6 O -0.519 6.519 7 N -0.719 5.719 8 C 0.121 3.879 9 C -0.145 4.145 10 C 0.125 3.875 11 N -0.738 5.738 12 C 0.530 3.470 13 O -0.518 6.518 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.523 4.523 17 H 0.088 0.912 18 C 0.097 3.903 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.062 3.938 25 N -0.235 5.235 26 N -0.228 5.228 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.402 0.598 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.690 -13.846 -0.058 35.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.075 4.075 3 C -0.087 4.087 4 C -0.143 4.143 5 C 0.347 3.653 6 O -0.395 6.395 7 N -0.371 5.371 8 C -0.002 4.002 9 C -0.183 4.183 10 C 0.000 4.000 11 N -0.393 5.393 12 C 0.316 3.684 13 O -0.392 6.392 14 C -0.275 4.275 15 S 0.085 5.915 16 C -0.670 4.670 17 H 0.106 0.894 18 C -0.112 4.112 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.104 4.104 25 N -0.075 5.075 26 N -0.071 5.071 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.182 0.818 31 H 0.238 0.762 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.234 0.766 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -33.478 -12.711 -0.064 35.810 hybrid contribution 1.231 0.027 0.048 1.232 sum -32.247 -12.683 -0.016 34.652 Atomic orbital electron populations 1.20758 0.86590 1.04638 1.04184 1.23029 0.99637 0.89750 0.95069 1.22547 0.93112 1.00864 0.92157 1.21227 0.95364 0.95114 1.02626 1.17873 0.82233 0.88005 0.77158 1.90838 1.71741 1.28400 1.48519 1.45848 1.05626 1.10698 1.74931 1.21354 0.89009 0.86087 1.03781 1.21994 0.93483 0.98939 1.03887 1.21095 0.80111 0.95730 1.03076 1.45915 1.05584 1.09805 1.78008 1.20297 0.87463 0.85403 0.75201 1.90711 1.82201 1.18769 1.47489 1.23278 0.93330 1.05056 1.05848 1.84811 1.01874 1.07418 1.97433 1.22313 0.88897 0.96892 1.58926 0.89379 1.24707 0.94104 0.99294 0.93122 1.69935 0.97602 1.36129 1.47978 0.86740 0.80185 0.84997 0.79961 1.19188 1.19899 1.15928 1.24523 1.02543 0.88788 0.94516 1.73091 0.99246 1.26710 1.08441 1.72881 1.01828 1.24995 1.07439 0.89316 0.89737 0.89439 0.81799 0.76196 0.90290 0.90298 0.90192 0.90186 0.91109 0.91114 0.76609 0.88454 0.88407 0.91911 0.80789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.29 10.19 36.01 0.37 0.08 16 2 C 0.07 0.42 6.86 -82.46 -0.57 -0.15 16 3 C -0.06 -0.33 9.43 -38.78 -0.37 -0.70 16 4 C -0.13 -0.80 5.92 -104.58 -0.62 -1.42 16 5 C 0.56 4.08 7.80 -12.20 -0.10 3.99 16 6 O -0.52 -5.64 16.49 5.35 0.09 -5.55 16 7 N -0.72 -3.39 5.52 -61.16 -0.34 -3.73 16 8 C 0.12 0.67 5.67 -4.04 -0.02 0.65 16 9 C -0.14 -0.67 5.44 -26.74 -0.15 -0.81 16 10 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 11 N -0.74 -8.02 5.56 -60.30 -0.34 -8.36 16 12 C 0.53 8.83 7.85 -10.99 -0.09 8.74 16 13 O -0.52 -10.75 15.86 5.56 0.09 -10.66 16 14 C -0.12 -2.29 6.16 36.00 0.22 -2.07 16 15 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 16 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 17 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 18 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 20 Si 0.86 21.55 27.74 -169.99 -4.72 16.83 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 24 C 0.06 0.34 10.84 -16.96 -0.18 0.16 16 25 N -0.24 -1.97 11.49 30.78 0.35 -1.62 16 26 N -0.23 -1.94 11.40 33.58 0.38 -1.55 16 27 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.08 0.09 8.09 -51.93 -0.42 -0.33 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.16 0.74 7.80 -52.49 -0.41 0.33 16 31 H 0.40 0.74 6.63 -40.82 -0.27 0.47 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.40 3.08 8.47 -40.82 -0.35 2.74 16 39 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 40 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.18 0.33 6.54 -52.48 -0.34 -0.01 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -38.35 380.19 -6.86 -45.21 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.59 Total: -2.98 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.30 Total: -2.30 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.84 Total: -40.77 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.18 Total: -16.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.83 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.35 -6.86 -45.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703318274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.548 kcal (2) G-P(sol) polarization free energy of solvation -38.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds