Wall clock time and date at job start Tue Mar 31 2020 20:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38549 * 120.01258 * 2 1 4 4 C 1.40077 * 117.81558 * 180.02562 * 3 2 1 5 5 C 1.48131 * 121.14600 * 179.97438 * 4 3 2 6 6 O 1.21513 * 119.99892 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00066 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00259 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47603 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47444 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47208 * 179.97438 * 10 9 8 12 12 C 1.34780 * 119.99915 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00035 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99997 * 180.02562 * 12 11 10 15 15 S 1.81000 * 109.47188 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99832 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00070 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00000 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99724 * 359.97438 * 18 16 15 21 21 H 1.48492 * 109.46981 * 90.00328 * 20 18 16 22 22 H 1.48502 * 109.47103 * 210.00449 * 20 18 16 23 23 H 1.48505 * 109.47060 * 330.00327 * 20 18 16 24 24 C 1.39763 * 117.70811 * 0.02562 * 4 3 2 25 25 N 1.31894 * 119.65827 * 359.97438 * 24 4 3 26 26 N 1.28284 * 122.32680 * 359.97438 * 25 24 4 27 27 H 1.08998 * 109.47434 * 269.97597 * 1 2 3 28 28 H 1.09001 * 109.46885 * 29.98003 * 1 2 3 29 29 H 1.09004 * 109.47045 * 149.97737 * 1 2 3 30 30 H 1.07992 * 121.09374 * 0.02562 * 3 2 1 31 31 H 0.96997 * 120.00284 * 359.97438 * 7 5 4 32 32 H 1.09001 * 109.46851 * 300.00223 * 8 7 5 33 33 H 1.09004 * 109.46924 * 59.99903 * 8 7 5 34 34 H 1.08999 * 109.46699 * 300.00114 * 9 8 7 35 35 H 1.08996 * 109.47207 * 59.99713 * 9 8 7 36 36 H 1.09001 * 109.46683 * 300.00026 * 10 9 8 37 37 H 1.08996 * 109.47400 * 59.99529 * 10 9 8 38 38 H 0.96994 * 119.99699 * 0.02562 * 11 10 9 39 39 H 1.08999 * 109.46562 * 299.99839 * 14 12 11 40 40 H 1.08996 * 109.47498 * 59.99531 * 14 12 11 41 41 H 0.97004 * 119.99786 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.17263 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4140 2.3835 -0.0012 6 8 3.8688 3.4695 -0.0007 7 7 5.7594 2.3049 -0.0022 8 6 6.5647 3.5288 -0.0034 9 6 8.0501 3.1620 -0.0038 10 6 8.8910 4.4401 -0.0043 11 7 10.3133 4.0889 -0.0041 12 6 11.2474 5.0605 -0.0050 13 8 10.9105 6.2256 -0.0066 14 6 12.7104 4.6993 -0.0054 15 16 13.7052 6.2114 -0.0059 16 6 15.3230 5.5132 -0.0055 17 1 15.4482 4.4405 -0.0046 18 6 16.4365 6.3418 -0.0051 19 7 17.6450 5.8203 -0.0053 20 14 16.2199 8.1973 -0.0059 21 1 16.1619 8.6894 1.3938 22 1 17.3672 8.8293 -0.7057 23 1 14.9585 8.5481 -0.7068 24 6 4.2017 -0.1153 -0.0016 25 7 3.4484 -1.1980 -0.0016 26 7 2.1668 -1.1419 -0.0001 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6782 2.1452 0.0004 31 1 6.1946 1.4381 -0.0022 32 1 6.3344 4.1143 -0.8934 33 1 6.3358 4.1151 0.8866 34 1 8.2799 2.5767 0.8865 35 1 8.2793 2.5755 -0.8934 36 1 8.6611 5.0258 -0.8944 37 1 8.6617 5.0264 0.8855 38 1 10.5827 3.1571 -0.0040 39 1 12.9402 4.1139 0.8849 40 1 12.9396 4.1127 -0.8950 41 1 18.4232 6.3994 -0.0047 42 1 5.2781 -0.2031 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703318274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:51 Heat of formation + Delta-G solvation = -55.185620 kcal Electronic energy + Delta-G solvation = -24190.702186 eV Core-core repulsion = 20296.037811 eV Total energy + Delta-G solvation = -3894.664375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.39170 -40.75959 -40.52553 -37.33380 -35.75521 -35.01555 -34.66765 -34.45808 -32.62477 -30.60652 -29.33116 -27.88499 -27.26693 -25.42151 -24.75515 -22.87426 -21.82852 -21.75274 -19.89402 -19.24682 -18.68404 -17.79903 -17.47283 -17.34241 -17.20729 -17.08004 -16.67207 -16.61859 -16.20868 -15.83555 -15.49754 -15.44495 -14.92147 -14.72721 -14.58483 -14.39903 -14.16565 -13.83613 -13.43730 -13.36497 -13.27526 -13.23924 -13.00672 -12.62990 -12.61328 -12.10581 -12.09850 -11.86592 -11.72847 -11.42080 -11.16691 -11.02245 -10.87155 -10.77320 -10.52209 -10.29412 -10.12510 -8.98837 -8.51176 -6.21755 -0.84782 -0.26216 1.00228 1.31827 1.47135 1.54099 1.55215 1.58135 1.75167 2.24555 2.30684 2.45749 2.73144 2.87340 2.87477 3.14962 3.33412 3.44101 3.70034 3.79134 3.94321 3.98219 4.05827 4.11283 4.25796 4.33442 4.49637 4.51807 4.58923 4.61029 4.72397 4.77096 4.83181 4.96911 5.05777 5.09853 5.22281 5.24366 5.42177 5.71163 6.12020 6.25127 6.49407 6.91052 6.94476 7.22161 7.50258 8.61131 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.043195 B = 0.001358 C = 0.001319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.069697 B =20613.319766 C =21225.037646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.069 3.931 3 C -0.059 4.059 4 C -0.134 4.134 5 C 0.565 3.435 6 O -0.561 6.561 7 N -0.702 5.702 8 C 0.123 3.877 9 C -0.126 4.126 10 C 0.121 3.879 11 N -0.710 5.710 12 C 0.533 3.467 13 O -0.565 6.565 14 C -0.111 4.111 15 S -0.180 6.180 16 C -0.529 4.529 17 H 0.064 0.936 18 C 0.047 3.953 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.263 1.263 22 H -0.260 1.260 23 H -0.237 1.237 24 C 0.070 3.930 25 N -0.267 5.267 26 N -0.259 5.259 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.175 0.825 31 H 0.419 0.581 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.420 0.580 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.277 0.723 42 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.982 -14.631 -0.061 36.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.076 4.076 3 C -0.089 4.089 4 C -0.149 4.149 5 C 0.350 3.650 6 O -0.440 6.440 7 N -0.354 5.354 8 C -0.001 4.001 9 C -0.164 4.164 10 C -0.004 4.004 11 N -0.364 5.364 12 C 0.319 3.681 13 O -0.443 6.443 14 C -0.262 4.262 15 S 0.046 5.954 16 C -0.676 4.676 17 H 0.082 0.918 18 C -0.158 4.158 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.161 1.161 24 C -0.096 4.096 25 N -0.106 5.106 26 N -0.102 5.102 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.192 0.808 31 H 0.258 0.742 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.257 0.743 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.086 0.914 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -34.766 -13.605 -0.068 37.334 hybrid contribution 1.528 0.147 0.055 1.536 sum -33.238 -13.459 -0.013 35.860 Atomic orbital electron populations 1.20885 0.84534 1.05548 1.05141 1.23441 1.00974 0.89100 0.94131 1.22781 0.93363 1.01297 0.91465 1.21221 0.95530 0.94950 1.03163 1.17994 0.82840 0.87621 0.76526 1.90823 1.72607 1.29829 1.50739 1.45688 1.04826 1.11393 1.73515 1.21264 0.89644 0.86229 1.02999 1.21837 0.91638 0.96973 1.05985 1.21241 0.78970 0.97888 1.02268 1.45646 1.05680 1.09775 1.75323 1.19962 0.87339 0.85540 0.75303 1.90702 1.82622 1.20779 1.50238 1.23278 0.93638 1.01692 1.07625 1.84758 1.00979 1.12037 1.97598 1.22469 0.91018 0.95946 1.58201 0.91828 1.25538 0.93914 1.03488 0.92891 1.70012 0.98456 1.37847 1.49195 0.85887 0.80362 0.80058 0.80190 1.18746 1.18411 1.16099 1.24960 1.03906 0.87740 0.92998 1.73006 0.99598 1.28089 1.09879 1.72795 1.02295 1.26392 1.08727 0.88206 0.87864 0.89467 0.80801 0.74222 0.91228 0.91240 0.88090 0.88081 0.92061 0.92061 0.74273 0.86673 0.86632 0.91393 0.77388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.45 10.19 71.24 0.73 0.28 16 2 C 0.07 0.77 6.86 42.63 0.29 1.07 16 3 C -0.06 -0.63 9.43 22.79 0.22 -0.42 16 4 C -0.13 -1.48 5.92 -19.83 -0.12 -1.59 16 5 C 0.56 7.33 7.80 86.87 0.68 8.01 16 6 O -0.56 -11.84 16.49 -3.76 -0.06 -11.90 16 7 N -0.70 -4.76 5.52 -465.70 -2.57 -7.33 16 8 C 0.12 1.07 5.67 86.38 0.49 1.56 16 9 C -0.13 -0.69 5.44 30.59 0.17 -0.53 16 10 C 0.12 1.82 5.67 86.38 0.49 2.31 16 11 N -0.71 -13.26 5.56 -463.07 -2.57 -15.83 16 12 C 0.53 16.74 7.85 87.66 0.69 17.43 16 13 O -0.56 -23.04 15.86 -3.02 -0.05 -23.09 16 14 C -0.11 -3.91 6.16 71.23 0.44 -3.47 16 15 S -0.18 -8.89 18.55 -56.49 -1.05 -9.93 16 16 C -0.53 -30.22 10.04 67.96 0.68 -29.53 16 17 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 18 C 0.05 2.73 5.50 84.86 0.47 3.20 16 19 N -0.92 -55.22 13.97 21.65 0.30 -54.92 16 20 Si 0.91 44.50 27.74 68.60 1.90 46.40 16 21 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.24 -11.54 6.74 99.48 0.67 -10.87 16 24 C 0.07 0.65 10.84 85.05 0.92 1.57 16 25 N -0.27 -4.25 11.49 -56.53 -0.65 -4.90 16 26 N -0.26 -4.31 11.40 -47.69 -0.54 -4.85 16 27 H 0.10 0.22 8.14 -2.39 -0.02 0.21 16 28 H 0.10 0.05 8.09 -2.39 -0.02 0.03 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.17 1.42 7.80 -2.91 -0.02 1.40 16 31 H 0.42 -0.05 6.63 -92.71 -0.61 -0.66 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.42 4.68 8.47 -92.71 -0.79 3.90 16 39 H 0.12 3.65 8.14 -2.40 -0.02 3.63 16 40 H 0.12 3.66 8.14 -2.40 -0.02 3.65 16 41 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.21 0.12 6.54 -2.91 -0.02 0.10 16 Total: -1.00 -85.66 380.19 0.49 -85.17 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -0.37 Total: 1.30 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.14 Total: -0.12 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -6.03 Total: -87.83 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.11 Total: -34.99 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.40 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.93 kcal Total: -85.66 0.49 -85.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703318274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.989 kcal (2) G-P(sol) polarization free energy of solvation -85.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds