Wall clock time and date at job start Tue Mar 31 2020 20:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32160 * 120.53993 * 2 1 4 4 C 1.31858 * 120.97048 * 180.02562 * 3 2 1 5 5 N 1.31884 * 122.09430 * 359.97438 * 4 3 2 6 6 C 1.32130 * 120.96687 * 359.97438 * 5 4 3 7 7 C 1.39934 * 120.53811 * 180.02562 * 2 1 3 8 8 C 1.47832 * 120.93692 * 0.02562 * 7 2 1 9 9 O 1.21558 * 119.99887 * 309.97109 * 8 7 2 10 10 N 1.34769 * 120.00120 * 129.97875 * 8 7 2 11 11 C 1.46500 * 120.00182 * 4.34098 * 10 8 7 12 12 C 1.46500 * 120.00004 * 184.34985 * 10 8 7 13 13 C 1.52995 * 109.47389 * 89.99721 * 12 10 8 14 14 N 1.46500 * 109.47389 * 180.02562 * 13 12 10 15 15 C 1.34774 * 120.00582 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99767 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00286 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47004 * 180.02562 * 17 15 14 19 19 C 1.76195 * 99.99871 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00426 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99923 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00260 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 120.00077 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47258 * 89.99830 * 23 21 19 25 25 H 1.48501 * 109.46921 * 209.99824 * 23 21 19 26 26 H 1.48494 * 109.46834 * 329.99507 * 23 21 19 27 27 H 1.09004 * 109.47113 * 95.71836 * 1 2 3 28 28 H 1.08996 * 109.46963 * 215.71807 * 1 2 3 29 29 H 1.08998 * 109.47170 * 335.72214 * 1 2 3 30 30 H 1.07997 * 118.94920 * 179.97438 * 4 3 2 31 31 H 1.08000 * 120.53855 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.46981 * 84.88644 * 11 10 8 33 33 H 1.08997 * 109.47488 * 204.88455 * 11 10 8 34 34 H 1.09000 * 109.47341 * 324.88880 * 11 10 8 35 35 H 1.09005 * 109.46800 * 209.99666 * 12 10 8 36 36 H 1.08996 * 109.46887 * 329.99371 * 12 10 8 37 37 H 1.09005 * 109.47104 * 299.99758 * 13 12 10 38 38 H 1.08996 * 109.47392 * 59.99958 * 13 12 10 39 39 H 0.97004 * 119.99599 * 0.02562 * 14 13 12 40 40 H 1.09001 * 109.47068 * 299.99662 * 17 15 14 41 41 H 1.08996 * 109.47040 * 60.00040 * 17 15 14 42 42 H 0.96998 * 120.00514 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4971 1.1482 -0.0005 5 7 4.2062 0.0362 -0.0005 6 6 3.6164 -1.1462 0.0005 7 6 2.2180 -1.2052 -0.0005 8 6 1.5120 -2.5041 -0.0017 9 8 0.6273 -2.7157 0.8046 10 7 1.8494 -3.4537 -0.8965 11 6 2.9779 -3.2362 -1.8051 12 6 1.0876 -4.7034 -0.9609 13 6 -0.0695 -4.5450 -1.9492 14 7 -0.8317 -5.7945 -2.0131 15 6 -1.9042 -5.8890 -2.8237 16 8 -2.2381 -4.9398 -3.5008 17 6 -2.6886 -7.1742 -2.8890 18 16 -4.0574 -6.9868 -4.0583 19 6 -4.7832 -8.5879 -3.9387 20 1 -4.3551 -9.3269 -3.2776 21 6 -5.9051 -8.8994 -4.6941 22 7 -6.4471 -10.0957 -4.6052 23 14 -6.6452 -7.6215 -5.8382 24 1 -6.0172 -7.7345 -7.1790 25 1 -8.1078 -7.8503 -5.9557 26 1 -6.3991 -6.2640 -5.2890 27 1 -0.3633 -0.1024 -1.0226 28 1 -0.3633 -0.8343 0.5999 29 1 -0.3633 0.9368 0.4225 30 1 4.0127 2.0971 -0.0009 31 1 4.2039 -2.0525 0.0008 32 1 3.9050 -3.5209 -1.3076 33 1 2.8453 -3.8427 -2.7010 34 1 3.0232 -2.1831 -2.0827 35 1 1.7409 -5.5104 -1.2926 36 1 0.6920 -4.9389 0.0271 37 1 -0.7228 -3.7379 -1.6175 38 1 0.3261 -4.3094 -2.9371 39 1 -0.5649 -6.5536 -1.4713 40 1 -2.0359 -7.9817 -3.2206 41 1 -3.0839 -7.4090 -1.9008 42 1 -7.2310 -10.3136 -5.1334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704182407.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:01 Heat of formation + Delta-G solvation = -15.961980 kcal Electronic energy + Delta-G solvation = -25633.361836 eV Core-core repulsion = 21740.398325 eV Total energy + Delta-G solvation = -3892.963510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92895 -40.14474 -39.23022 -36.64011 -35.00742 -34.66767 -33.25106 -32.45179 -30.76682 -29.31724 -28.47651 -27.32265 -25.69745 -25.48920 -23.69452 -23.11774 -20.81031 -20.16703 -18.56114 -17.95145 -17.86696 -17.40792 -16.88211 -16.50098 -16.22992 -15.64233 -15.43966 -15.15329 -14.93305 -14.64566 -14.52711 -14.04488 -13.79747 -13.72308 -13.52169 -13.39699 -13.32344 -12.92034 -12.81330 -12.69206 -12.45660 -12.28560 -12.19708 -11.58181 -11.28305 -11.15091 -11.02127 -10.64325 -10.42225 -10.08236 -9.88978 -9.87870 -9.63898 -9.32853 -9.09423 -9.00679 -8.52279 -6.93842 -6.30258 -4.02308 -0.03707 0.43027 1.95270 2.23840 2.78184 2.91876 3.11860 3.30559 3.34006 3.45145 3.49532 3.49831 3.64519 3.75314 3.79412 4.31808 4.32137 4.45209 4.48422 4.56679 4.68809 4.72603 4.82387 4.90577 5.03692 5.08077 5.08758 5.14820 5.26877 5.30025 5.46840 5.52455 5.61811 5.73892 5.81798 5.87168 5.98431 6.28371 6.41349 6.64580 7.42744 7.46394 7.51716 7.92706 8.40148 8.42188 9.15825 10.78881 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.001906 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.053015 B =14683.719623 C =15172.423430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.232 3.768 3 N -0.521 5.521 4 C 0.316 3.684 5 N -0.526 5.526 6 C 0.184 3.816 7 C -0.241 4.241 8 C 0.573 3.427 9 O -0.514 6.514 10 N -0.605 5.605 11 C 0.071 3.929 12 C 0.104 3.896 13 C 0.107 3.893 14 N -0.735 5.735 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.203 0.797 31 H 0.174 0.826 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.401 0.599 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.834 17.491 10.093 32.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 N -0.235 5.235 4 C 0.029 3.971 5 N -0.240 5.240 6 C 0.017 3.983 7 C -0.249 4.249 8 C 0.360 3.640 9 O -0.389 6.389 10 N -0.339 5.339 11 C -0.072 4.072 12 C -0.019 4.019 13 C -0.018 4.018 14 N -0.390 5.390 15 C 0.318 3.682 16 O -0.392 6.392 17 C -0.274 4.274 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.219 0.781 31 H 0.191 0.809 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.235 0.765 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 24.134 19.726 9.330 32.536 hybrid contribution -0.140 -1.941 0.395 1.986 sum 23.994 17.785 9.725 31.410 Atomic orbital electron populations 1.21128 0.86806 1.05909 1.04672 1.21914 0.98027 0.86436 0.85051 1.68439 1.10318 1.29506 1.15244 1.25259 0.86722 0.97336 0.87766 1.68493 1.41323 0.98903 1.15260 1.23551 0.90449 0.96893 0.87406 1.21510 0.96664 0.95937 1.10751 1.17873 0.82582 0.82855 0.80739 1.90823 1.30842 1.79423 1.37837 1.47594 1.32535 1.17594 1.36131 1.22054 0.88199 1.02902 0.94072 1.21682 0.93335 0.85191 1.01650 1.21562 0.92938 0.87867 0.99463 1.45781 1.30898 1.15548 1.46803 1.20292 0.79601 0.89717 0.78562 1.90707 1.67216 1.39207 1.42085 1.23274 1.01377 0.97232 1.05556 1.84803 1.30333 1.21802 1.54621 1.22311 1.16653 0.96639 1.31321 0.89349 1.24717 0.95366 0.95334 0.95908 1.69937 1.21875 1.19574 1.40245 0.86733 0.79166 0.83829 0.82118 1.19220 1.19924 1.15923 0.89078 0.87723 0.89268 0.78086 0.80873 0.91662 0.89696 0.91188 0.89146 0.88489 0.91211 0.91436 0.76523 0.88404 0.88316 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 9.74 36.00 0.35 -0.73 16 2 C 0.23 2.09 6.86 -81.82 -0.56 1.53 16 3 N -0.52 -4.58 10.36 -10.48 -0.11 -4.69 16 4 C 0.32 2.20 12.27 -92.02 -1.13 1.07 16 5 N -0.53 -3.85 10.42 -14.24 -0.15 -4.00 16 6 C 0.18 1.19 9.14 -16.78 -0.15 1.04 16 7 C -0.24 -1.97 4.86 -104.69 -0.51 -2.48 16 8 C 0.57 5.23 6.80 -12.34 -0.08 5.14 16 9 O -0.51 -6.35 14.58 5.31 0.08 -6.27 16 10 N -0.61 -4.12 2.87 -182.70 -0.52 -4.65 16 11 C 0.07 0.27 9.11 59.85 0.55 0.81 16 12 C 0.10 0.73 5.53 -4.04 -0.02 0.71 16 13 C 0.11 1.11 6.00 -4.04 -0.02 1.08 16 14 N -0.73 -8.63 5.56 -60.30 -0.33 -8.96 16 15 C 0.53 9.15 7.85 -10.99 -0.09 9.06 16 16 O -0.52 -11.01 15.86 5.55 0.09 -10.92 16 17 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 18 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 19 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 20 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 23 Si 0.86 21.69 27.74 -169.99 -4.72 16.97 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.10 1.02 5.93 -51.93 -0.31 0.72 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.20 0.71 8.06 -52.49 -0.42 0.28 16 31 H 0.17 0.63 6.52 -52.49 -0.34 0.29 16 32 H 0.06 0.12 7.16 -51.93 -0.37 -0.25 16 33 H 0.08 0.26 8.03 -51.93 -0.42 -0.15 16 34 H 0.07 0.29 6.33 -51.93 -0.33 -0.04 16 35 H 0.09 0.40 8.07 -51.93 -0.42 -0.02 16 36 H 0.10 0.77 7.36 -51.93 -0.38 0.38 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.40 3.39 8.47 -40.82 -0.35 3.05 16 40 H 0.10 1.68 8.14 -51.91 -0.42 1.25 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -37.49 371.84 -7.97 -45.46 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.45 Total: -0.59 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.24 Total: 3.22 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.34 Total: -47.91 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.17 Total: -17.20 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.49 -7.97 -45.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704182407.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.498 kcal (2) G-P(sol) polarization free energy of solvation -37.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds