Wall clock time and date at job start Tue Mar 31 2020 20:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35311 * 126.12591 * 2 1 4 4 C 1.39873 * 107.91994 * 179.97438 * 3 2 1 5 5 N 1.30837 * 108.19915 * 359.73717 * 4 3 2 6 6 N 1.34943 * 126.12612 * 179.97438 * 2 1 3 7 7 C 1.46511 * 126.03853 * 0.02562 * 6 2 1 8 8 C 1.50701 * 109.47079 * 90.00101 * 7 6 2 9 9 O 1.21287 * 119.99731 * 359.97438 * 8 7 6 10 10 N 1.34767 * 119.99869 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99895 * 179.97438 * 10 8 7 12 12 C 1.53501 * 114.20747 * 204.99407 * 11 10 8 13 13 N 1.47065 * 87.98741 * 220.14872 * 12 11 10 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31626 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47145 * 60.00107 * 22 20 18 24 24 H 1.48496 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47229 * 300.00299 * 22 20 18 26 26 C 1.47067 * 87.88381 * 27.34024 * 13 12 11 27 27 H 1.08995 * 109.47088 * 270.02468 * 1 2 3 28 28 H 1.09000 * 109.46893 * 30.03356 * 1 2 3 29 29 H 1.09003 * 109.46865 * 150.03145 * 1 2 3 30 30 H 1.08000 * 126.04130 * 359.97068 * 3 2 1 31 31 H 1.07996 * 125.89715 * 179.97438 * 4 3 2 32 32 H 1.08992 * 109.46919 * 330.00036 * 7 6 2 33 33 H 1.08998 * 109.46620 * 210.00041 * 7 6 2 34 34 H 0.97001 * 120.00444 * 359.97438 * 10 8 7 35 35 H 1.09001 * 113.28417 * 338.06104 * 11 10 8 36 36 H 1.09001 * 113.46643 * 105.36573 * 12 11 10 37 37 H 1.09004 * 113.51834 * 334.94016 * 12 11 10 38 38 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 39 39 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 40 40 H 0.97004 * 120.00604 * 179.97438 * 21 20 18 41 41 H 1.09010 * 113.46411 * 87.43777 * 26 13 12 42 42 H 1.08997 * 113.47100 * 217.87349 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0006 5 7 3.6334 -0.6524 0.0066 6 7 2.3026 -1.0900 0.0005 7 6 1.8539 -2.4847 0.0006 8 6 1.7006 -2.9631 -1.4202 9 8 1.9419 -2.2128 -2.3421 10 7 1.2944 -4.2243 -1.6664 11 6 1.1448 -4.6892 -3.0476 12 6 0.1506 -5.8463 -3.2180 13 7 1.0872 -6.4402 -4.1839 14 6 0.9923 -7.2606 -5.2490 15 8 -0.0908 -7.6822 -5.5951 16 6 2.2324 -7.6550 -6.0091 17 16 1.7796 -8.7551 -7.3732 18 6 3.3709 -9.0492 -8.0702 19 1 4.2452 -8.5900 -7.6331 20 6 3.5016 -9.8761 -9.1773 21 7 2.4367 -10.4401 -9.7068 22 14 5.1885 -10.1873 -9.9167 23 1 6.0685 -10.8120 -8.8966 24 1 5.0577 -11.0977 -11.0826 25 1 5.7804 -8.8993 -10.3591 26 6 2.1735 -5.7502 -3.4721 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5144 29 1 -0.3633 -0.8903 -0.5134 30 1 1.9741 2.1210 -0.0004 31 1 4.5084 1.2891 0.0004 32 1 0.8953 -2.5578 0.5140 33 1 2.5897 -3.1029 0.5148 34 1 1.1010 -4.8243 -0.9291 35 1 1.0132 -3.8779 -3.7635 36 1 -0.7970 -5.5424 -3.6628 37 1 0.0201 -6.4441 -2.3159 38 1 2.9203 -8.1712 -5.3394 39 1 2.7142 -6.7618 -6.4067 40 1 2.5279 -11.0177 -10.4808 41 1 2.5771 -6.3222 -2.6366 42 1 2.9494 -5.3644 -4.1334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704520786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:54 Heat of formation + Delta-G solvation = 56.337311 kcal Electronic energy + Delta-G solvation = -25308.564453 eV Core-core repulsion = 21418.736075 eV Total energy + Delta-G solvation = -3889.828378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69108 -40.81710 -39.43781 -37.62497 -34.37885 -33.84119 -32.45189 -32.44115 -30.47954 -28.53428 -27.35895 -27.13540 -26.19636 -25.46184 -22.71254 -21.54095 -21.28021 -20.11479 -19.18244 -17.93629 -17.80142 -17.41381 -16.74350 -16.65627 -16.04347 -15.44933 -15.33557 -14.83773 -14.81982 -14.43837 -14.35170 -14.06290 -13.98361 -13.59838 -13.34256 -13.14104 -13.11471 -12.95692 -12.78145 -12.60627 -12.52294 -12.44258 -11.88253 -11.44274 -11.06187 -11.04815 -10.93575 -10.79292 -10.67590 -9.86286 -9.69397 -9.57399 -9.47308 -9.07960 -8.83761 -8.76695 -8.28753 -6.53949 -6.23557 -3.95079 1.40835 1.92545 1.97825 2.43703 2.56144 2.79998 3.03346 3.22874 3.23925 3.28087 3.51529 3.90464 4.00083 4.12093 4.18194 4.23121 4.41433 4.43434 4.62377 4.73368 4.76973 4.80663 4.99459 5.09263 5.11612 5.27605 5.31912 5.33712 5.37421 5.41409 5.48871 5.50500 5.80443 5.81290 5.85607 5.97430 6.10118 6.32034 6.56410 6.86618 7.38027 7.57513 7.60291 7.69956 8.33102 8.41887 9.21561 10.83809 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.001822 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.419941 B =15364.979655 C =16303.857684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.093 3.907 3 C -0.273 4.273 4 C 0.052 3.948 5 N -0.289 5.289 6 N -0.360 5.360 7 C 0.115 3.885 8 C 0.498 3.502 9 O -0.511 6.511 10 N -0.714 5.714 11 C 0.110 3.890 12 C 0.099 3.901 13 N -0.650 5.650 14 C 0.567 3.433 15 O -0.510 6.510 16 C -0.145 4.145 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.920 3.080 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.273 1.273 26 C 0.087 3.913 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.184 0.816 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.405 0.595 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.269 0.731 41 H 0.087 0.913 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 20.031 26.491 33.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.034 4.034 3 C -0.302 4.302 4 C -0.135 4.135 5 N -0.108 5.108 6 N -0.143 5.143 7 C -0.011 4.011 8 C 0.281 3.719 9 O -0.384 6.384 10 N -0.367 5.367 11 C 0.004 3.996 12 C -0.026 4.026 13 N -0.389 5.389 14 C 0.357 3.643 15 O -0.383 6.383 16 C -0.296 4.296 17 S 0.168 5.832 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.038 4.038 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.201 0.799 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.240 0.760 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.179 18.482 24.929 31.313 hybrid contribution 1.893 0.577 0.272 1.997 sum -2.286 19.059 25.200 31.679 Atomic orbital electron populations 1.20471 0.87380 1.04208 1.03151 1.21074 0.94631 0.87224 1.00432 1.21228 0.92362 0.98924 1.17708 1.23855 0.98229 0.92113 0.99267 1.77398 0.95903 1.13297 1.24240 1.47904 1.04263 1.04218 1.57898 1.21412 1.03562 0.80791 0.95374 1.20899 0.77193 0.82154 0.91606 1.90822 1.47553 1.54471 1.45596 1.45725 1.69280 1.13212 1.08525 1.22968 0.96765 0.96003 0.83838 1.23191 0.95643 0.91027 0.92725 1.49341 1.10954 1.50098 1.28536 1.19942 0.91071 0.75448 0.77818 1.90726 1.29431 1.52111 1.66001 1.23483 0.97641 1.05244 1.03182 1.85388 1.12893 1.56824 1.28113 1.22812 0.93143 1.34964 1.17538 0.90925 1.24994 0.97980 0.94780 0.95787 1.70003 1.28681 1.29437 1.22133 0.86209 0.82355 0.78356 0.78502 1.19921 1.20768 1.19886 1.23505 0.92951 0.91160 0.96167 0.90063 0.89358 0.91311 0.83492 0.79923 0.85898 0.85460 0.75951 0.84909 0.89566 0.89692 0.89205 0.89110 0.92080 0.89484 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 9.90 36.01 0.36 -0.07 16 2 C 0.09 0.75 6.93 -82.26 -0.57 0.18 16 3 C -0.27 -2.28 10.72 -40.01 -0.43 -2.70 16 4 C 0.05 0.48 12.03 -17.36 -0.21 0.27 16 5 N -0.29 -3.25 12.58 30.62 0.39 -2.86 16 6 N -0.36 -3.26 3.10 -58.31 -0.18 -3.44 16 7 C 0.11 0.60 6.55 -5.19 -0.03 0.56 16 8 C 0.50 3.93 7.90 -10.99 -0.09 3.85 16 9 O -0.51 -6.79 16.02 5.55 0.09 -6.71 16 10 N -0.71 -3.84 5.39 -53.48 -0.29 -4.13 16 11 C 0.11 0.92 4.62 -67.67 -0.31 0.61 16 12 C 0.10 0.92 8.38 -8.51 -0.07 0.85 16 13 N -0.65 -8.93 3.69 -185.07 -0.68 -9.61 16 14 C 0.57 10.93 8.10 -10.99 -0.09 10.84 16 15 O -0.51 -11.82 16.64 5.56 0.09 -11.73 16 16 C -0.15 -3.01 5.98 36.00 0.22 -2.79 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 22 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.09 0.86 8.25 -8.38 -0.07 0.79 16 27 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.30 7.72 -51.93 -0.40 -0.10 16 30 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.12 0.17 7.66 -51.93 -0.40 -0.23 16 33 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.41 0.71 8.76 -40.82 -0.36 0.35 16 35 H 0.13 1.39 7.45 -51.93 -0.39 1.00 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 39 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -41.14 383.50 -8.15 -49.28 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.74 Total: -3.11 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.10 Total: -0.68 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.03 Total: -45.54 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.18 Total: -18.43 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -41.14 -8.15 -49.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704520786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.620 kcal (2) G-P(sol) polarization free energy of solvation -41.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds