Wall clock time and date at job start Tue Mar 31 2020 20:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35311 * 126.12591 * 2 1 4 4 C 1.39873 * 107.91994 * 179.97438 * 3 2 1 5 5 N 1.30837 * 108.19915 * 359.73717 * 4 3 2 6 6 N 1.34943 * 126.12612 * 179.97438 * 2 1 3 7 7 C 1.46511 * 126.03853 * 0.02562 * 6 2 1 8 8 C 1.50701 * 109.47079 * 90.00101 * 7 6 2 9 9 O 1.21287 * 119.99731 * 359.97438 * 8 7 6 10 10 N 1.34767 * 119.99869 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99895 * 179.97438 * 10 8 7 12 12 C 1.53501 * 114.20747 * 204.99407 * 11 10 8 13 13 N 1.47065 * 87.98741 * 220.14872 * 12 11 10 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31626 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47145 * 60.00107 * 22 20 18 24 24 H 1.48496 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47229 * 300.00299 * 22 20 18 26 26 C 1.47067 * 87.88381 * 27.34024 * 13 12 11 27 27 H 1.08995 * 109.47088 * 270.02468 * 1 2 3 28 28 H 1.09000 * 109.46893 * 30.03356 * 1 2 3 29 29 H 1.09003 * 109.46865 * 150.03145 * 1 2 3 30 30 H 1.08000 * 126.04130 * 359.97068 * 3 2 1 31 31 H 1.07996 * 125.89715 * 179.97438 * 4 3 2 32 32 H 1.08992 * 109.46919 * 330.00036 * 7 6 2 33 33 H 1.08998 * 109.46620 * 210.00041 * 7 6 2 34 34 H 0.97001 * 120.00444 * 359.97438 * 10 8 7 35 35 H 1.09001 * 113.28417 * 338.06104 * 11 10 8 36 36 H 1.09001 * 113.46643 * 105.36573 * 12 11 10 37 37 H 1.09004 * 113.51834 * 334.94016 * 12 11 10 38 38 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 39 39 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 40 40 H 0.97004 * 120.00604 * 179.97438 * 21 20 18 41 41 H 1.09010 * 113.46411 * 87.43777 * 26 13 12 42 42 H 1.08997 * 113.47100 * 217.87349 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0006 5 7 3.6334 -0.6524 0.0066 6 7 2.3026 -1.0900 0.0005 7 6 1.8539 -2.4847 0.0006 8 6 1.7006 -2.9631 -1.4202 9 8 1.9419 -2.2128 -2.3421 10 7 1.2944 -4.2243 -1.6664 11 6 1.1448 -4.6892 -3.0476 12 6 0.1506 -5.8463 -3.2180 13 7 1.0872 -6.4402 -4.1839 14 6 0.9923 -7.2606 -5.2490 15 8 -0.0908 -7.6822 -5.5951 16 6 2.2324 -7.6550 -6.0091 17 16 1.7796 -8.7551 -7.3732 18 6 3.3709 -9.0492 -8.0702 19 1 4.2452 -8.5900 -7.6331 20 6 3.5016 -9.8761 -9.1773 21 7 2.4367 -10.4401 -9.7068 22 14 5.1885 -10.1873 -9.9167 23 1 6.0685 -10.8120 -8.8966 24 1 5.0577 -11.0977 -11.0826 25 1 5.7804 -8.8993 -10.3591 26 6 2.1735 -5.7502 -3.4721 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5144 29 1 -0.3633 -0.8903 -0.5134 30 1 1.9741 2.1210 -0.0004 31 1 4.5084 1.2891 0.0004 32 1 0.8953 -2.5578 0.5140 33 1 2.5897 -3.1029 0.5148 34 1 1.1010 -4.8243 -0.9291 35 1 1.0132 -3.8779 -3.7635 36 1 -0.7970 -5.5424 -3.6628 37 1 0.0201 -6.4441 -2.3159 38 1 2.9203 -8.1712 -5.3394 39 1 2.7142 -6.7618 -6.4067 40 1 2.5279 -11.0177 -10.4808 41 1 2.5771 -6.3222 -2.6366 42 1 2.9494 -5.3644 -4.1334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704520786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:53 Heat of formation + Delta-G solvation = 24.448062 kcal Electronic energy + Delta-G solvation = -25309.947275 eV Core-core repulsion = 21418.736075 eV Total energy + Delta-G solvation = -3891.211200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27918 -41.72211 -40.35165 -38.90842 -35.14122 -34.62334 -34.40657 -32.93135 -31.89209 -29.52452 -28.08000 -27.77398 -27.63278 -27.00758 -23.56108 -22.22888 -21.89023 -20.80432 -20.37211 -19.57795 -18.52682 -18.26786 -17.94756 -17.39453 -17.01194 -16.90265 -16.48706 -16.28114 -15.82750 -15.79198 -15.19414 -14.94814 -14.73170 -14.60949 -14.29001 -14.21665 -13.85623 -13.77641 -13.71418 -13.52588 -13.25075 -13.21633 -13.10011 -12.89574 -12.87689 -12.65888 -12.28503 -11.79315 -11.55338 -11.43155 -11.16392 -11.08749 -10.35898 -10.26895 -10.17512 -9.89434 -9.42310 -8.72557 -8.38022 -6.17412 0.81221 1.12868 1.37029 1.38273 1.41399 1.42882 1.48948 1.53234 1.81473 1.95112 2.23624 2.28272 2.95917 3.08375 3.23372 3.51041 3.56545 3.68686 3.80047 3.82107 3.98410 4.15013 4.18957 4.20269 4.36404 4.37443 4.39565 4.48480 4.55762 4.74308 4.75835 4.81357 4.82750 4.86908 5.06060 5.27965 5.30492 5.37769 5.74175 6.07270 6.15937 6.37720 6.48793 6.76802 6.99496 7.02825 7.08852 8.70991 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.001822 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.419941 B =15364.979655 C =16303.857684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.086 3.914 3 C -0.294 4.294 4 C 0.040 3.960 5 N -0.334 5.334 6 N -0.368 5.368 7 C 0.111 3.889 8 C 0.500 3.500 9 O -0.571 6.571 10 N -0.690 5.690 11 C 0.128 3.872 12 C 0.101 3.899 13 N -0.651 5.651 14 C 0.566 3.434 15 O -0.562 6.562 16 C -0.121 4.121 17 S -0.145 6.145 18 C -0.550 4.550 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.909 5.909 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.277 1.277 25 H -0.264 1.264 26 C 0.084 3.916 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.163 0.837 31 H 0.201 0.799 32 H 0.168 0.832 33 H 0.149 0.851 34 H 0.428 0.572 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.272 0.728 41 H 0.121 0.879 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 20.631 29.189 35.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C -0.323 4.323 4 C -0.146 4.146 5 N -0.155 5.155 6 N -0.151 5.151 7 C -0.013 4.013 8 C 0.286 3.714 9 O -0.448 6.448 10 N -0.344 5.344 11 C 0.021 3.979 12 C -0.021 4.021 13 N -0.388 5.388 14 C 0.356 3.644 15 O -0.440 6.440 16 C -0.272 4.272 17 S 0.082 5.918 18 C -0.697 4.697 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.820 3.180 23 H -0.185 1.185 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.039 4.039 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.181 0.819 31 H 0.218 0.782 32 H 0.185 0.815 33 H 0.167 0.833 34 H 0.268 0.732 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.142 0.858 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.139 0.861 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.412 19.095 27.728 33.839 hybrid contribution 1.615 0.514 -0.414 1.744 sum -1.798 19.608 27.314 33.671 Atomic orbital electron populations 1.20589 0.84890 1.04633 1.04814 1.21705 0.96250 0.87041 0.99055 1.21592 0.92238 1.00125 1.18312 1.24305 0.99534 0.92064 0.98717 1.77291 0.97801 1.14296 1.26077 1.48181 1.03675 1.05645 1.57633 1.21809 1.06407 0.79477 0.93653 1.21414 0.75811 0.81952 0.92195 1.90813 1.50310 1.56164 1.47538 1.45435 1.68147 1.12966 1.07889 1.22444 0.95617 0.94777 0.85099 1.23505 0.94802 0.91175 0.92645 1.49177 1.14329 1.47812 1.27484 1.19493 0.89549 0.76276 0.79118 1.90700 1.30624 1.54726 1.67932 1.23276 0.98998 1.03939 1.00981 1.85525 1.14666 1.59535 1.32082 1.23148 0.93229 1.35293 1.18057 0.90070 1.26134 1.02598 0.94209 0.96107 1.70166 1.31406 1.30234 1.22751 0.84998 0.76616 0.78604 0.77745 1.18540 1.20153 1.18837 1.23857 0.92299 0.91323 0.96458 0.87618 0.88937 0.90887 0.81908 0.78184 0.81463 0.83333 0.73187 0.87159 0.90203 0.85795 0.87448 0.88057 0.91863 0.86100 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 9.90 71.24 0.71 0.11 16 2 C 0.09 1.27 6.93 41.41 0.29 1.56 16 3 C -0.29 -4.68 10.72 21.99 0.24 -4.44 16 4 C 0.04 0.72 12.03 85.24 1.03 1.75 16 5 N -0.33 -7.37 12.58 -57.02 -0.72 -8.08 16 6 N -0.37 -6.07 3.10 -338.39 -1.05 -7.12 16 7 C 0.11 0.81 6.55 85.63 0.56 1.37 16 8 C 0.50 6.71 7.90 87.66 0.69 7.40 16 9 O -0.57 -14.78 16.02 -3.05 -0.05 -14.83 16 10 N -0.69 -5.00 5.39 -441.51 -2.38 -7.38 16 11 C 0.13 1.83 4.62 45.55 0.21 2.04 16 12 C 0.10 1.63 8.38 83.18 0.70 2.33 16 13 N -0.65 -16.84 3.69 -857.84 -3.16 -20.00 16 14 C 0.57 21.83 8.10 87.66 0.71 22.54 16 15 O -0.56 -26.77 16.64 -3.02 -0.05 -26.82 16 16 C -0.12 -5.03 5.98 71.24 0.43 -4.60 16 17 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 18 C -0.55 -31.90 9.50 67.95 0.65 -31.26 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.84 5.49 84.86 0.47 1.30 16 21 N -0.91 -56.21 13.22 21.65 0.29 -55.93 16 22 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 26 C 0.08 1.43 8.25 83.26 0.69 2.12 16 27 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.42 7.72 -2.39 -0.02 0.40 16 30 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 31 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.17 -0.34 7.66 -2.39 -0.02 -0.36 16 33 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.43 -0.66 8.76 -92.71 -0.81 -1.47 16 35 H 0.11 2.23 7.45 -2.39 -0.02 2.21 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 39 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 41 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -95.64 383.50 1.33 -94.31 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.24 Total: 6.96 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 7.35 Total: 2.22 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -7.02 Total: -98.52 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.10 Total: -41.65 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -95.64 1.33 -94.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704520786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.757 kcal (2) G-P(sol) polarization free energy of solvation -95.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds