Wall clock time and date at job start Tue Mar 31 2020 20:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35373 * 126.38571 * 2 1 4 4 C 1.41505 * 105.50060 * 180.08550 * 3 2 1 5 5 C 1.47712 * 126.52000 * 179.90290 * 4 3 2 6 6 O 1.21569 * 119.99621 * 359.71272 * 5 4 3 7 7 N 1.34771 * 120.00122 * 179.71166 * 5 4 3 8 8 C 1.46505 * 119.99611 * 180.02562 * 7 5 4 9 9 C 1.53009 * 109.46831 * 174.96827 * 8 7 5 10 10 N 1.46495 * 115.54715 * 85.77478 * 9 8 7 11 11 C 1.34779 * 120.00375 * 65.40694 * 10 9 8 12 12 O 1.21283 * 119.99626 * 354.97760 * 11 10 9 13 13 C 1.50700 * 120.00262 * 174.97499 * 11 10 9 14 14 S 1.81006 * 109.46951 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99857 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99846 * 359.97438 * 15 14 13 17 17 C 1.38795 * 120.00231 * 180.02562 * 15 14 13 18 18 N 1.31634 * 119.99666 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00450 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46982 * 59.99762 * 19 17 15 21 21 H 1.48491 * 109.47305 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46901 * 299.99969 * 19 17 15 23 23 C 1.52993 * 117.49722 * 231.44326 * 9 8 7 24 24 C 1.52997 * 117.49928 * 300.10289 * 9 8 7 25 25 N 1.31813 * 106.96572 * 359.63744 * 4 3 2 26 26 N 1.28469 * 110.07089 * 0.22512 * 25 4 3 27 27 H 0.96997 * 124.88292 * 179.97438 * 26 25 4 28 28 H 1.08997 * 109.47287 * 270.30004 * 1 2 3 29 29 H 1.09009 * 109.47025 * 30.29587 * 1 2 3 30 30 H 1.08994 * 109.47561 * 150.29485 * 1 2 3 31 31 H 1.07999 * 127.24986 * 359.96799 * 3 2 1 32 32 H 0.96999 * 120.00486 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.47545 * 54.97056 * 8 7 5 34 34 H 1.08996 * 109.46839 * 294.96726 * 8 7 5 35 35 H 0.97002 * 119.99938 * 245.40447 * 10 9 8 36 36 H 1.08999 * 109.47302 * 300.00003 * 13 11 10 37 37 H 1.08998 * 109.46945 * 60.00407 * 13 11 10 38 38 H 0.97004 * 119.99765 * 180.02562 * 18 17 15 39 39 H 1.09005 * 117.49813 * 215.00448 * 23 9 8 40 40 H 1.08997 * 117.50305 * 0.02987 * 23 9 8 41 41 H 1.08999 * 117.49998 * 359.97438 * 24 9 8 42 42 H 1.09000 * 117.49970 * 144.97302 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5854 -0.0020 5 6 4.8765 1.3811 -0.0048 6 8 4.8214 2.5955 -0.0109 7 7 6.0730 0.7608 -0.0007 8 6 7.3073 1.5501 -0.0029 9 6 8.5110 0.6148 0.1292 10 7 9.0118 0.0486 -1.1256 11 6 9.5532 0.8548 -2.0602 12 8 9.5435 2.0574 -1.9028 13 6 10.1706 0.2622 -3.3006 14 16 10.8063 1.5912 -4.3521 15 6 11.4517 0.6417 -5.6887 16 1 11.3766 -0.4356 -5.6715 17 6 12.0574 1.2780 -6.7633 18 7 12.1493 2.5910 -6.7840 19 14 12.7422 0.2713 -8.1800 20 1 11.6480 -0.5179 -8.8007 21 1 13.3322 1.1814 -9.1941 22 1 13.7901 -0.6500 -7.6715 23 6 9.5359 0.9324 1.2198 24 6 8.5910 -0.2610 1.3811 25 7 3.5420 -0.7297 0.0049 26 7 2.3080 -1.0871 0.0062 27 1 1.9965 -2.0057 0.0106 28 1 -0.3634 0.0054 1.0276 29 1 -0.3633 0.8874 -0.5185 30 1 -0.3634 -0.8925 -0.5092 31 1 2.0057 2.1260 -0.0005 32 1 6.1170 -0.2082 0.0045 33 1 7.2947 2.2466 0.8354 34 1 7.3806 2.1070 -0.9370 35 1 8.9538 -0.9067 -1.2840 36 1 10.9889 -0.4002 -3.0183 37 1 9.4164 -0.3044 -3.8467 38 1 12.5723 3.0357 -7.5352 39 1 10.5830 0.7200 1.0036 40 1 9.3526 1.8073 1.8435 41 1 7.7864 -0.1706 2.1109 42 1 9.0160 -1.2587 1.2711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705251322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:58 Heat of formation + Delta-G solvation = -5.467953 kcal Electronic energy + Delta-G solvation = -25599.601611 eV Core-core repulsion = 21707.093156 eV Total energy + Delta-G solvation = -3892.508455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.69746 -41.24753 -40.28040 -38.47826 -35.37981 -34.59220 -34.02752 -33.62645 -32.90987 -30.57215 -28.70821 -27.77530 -27.65346 -24.78241 -23.67946 -22.56377 -22.24985 -21.25827 -20.69277 -19.84965 -18.66765 -18.30419 -17.82435 -17.47020 -16.96273 -16.88395 -16.79933 -16.37968 -16.20374 -15.73920 -15.50900 -14.96284 -14.81130 -14.75487 -14.54099 -14.04961 -13.99922 -13.72650 -13.62217 -13.41997 -13.17404 -13.10384 -12.87202 -12.63443 -12.45713 -11.98261 -11.94039 -11.77210 -11.61329 -11.29965 -11.13410 -10.84298 -10.54326 -10.28021 -10.15418 -10.10036 -9.93733 -8.67272 -8.34826 -6.13196 0.44416 1.08914 1.24675 1.43246 1.45117 1.54856 1.59772 1.76881 2.11072 2.14874 2.27216 2.28768 2.78963 2.98987 3.29336 3.33346 3.46277 3.76122 3.80292 3.86110 3.97802 4.06193 4.29342 4.40639 4.45251 4.51149 4.58071 4.60411 4.71715 4.80608 4.81300 4.97189 5.01998 5.11629 5.16513 5.23928 5.33764 5.40681 5.51462 6.07853 6.18935 6.38695 6.49112 6.83109 7.05968 7.08021 7.25715 8.74091 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.002253 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.442741 B =12424.531155 C =13545.590334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.035 3.965 3 C -0.209 4.209 4 C -0.036 4.036 5 C 0.596 3.404 6 O -0.575 6.575 7 N -0.697 5.697 8 C 0.157 3.843 9 C 0.063 3.937 10 N -0.682 5.682 11 C 0.536 3.464 12 O -0.553 6.553 13 C -0.128 4.128 14 S -0.152 6.152 15 C -0.547 4.547 16 H 0.083 0.917 17 C 0.011 3.989 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.262 1.262 21 H -0.279 1.279 22 H -0.260 1.260 23 C -0.168 4.168 24 C -0.123 4.123 25 N -0.262 5.262 26 N -0.362 5.362 27 H 0.463 0.537 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.417 0.583 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.419 0.581 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.271 0.729 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.167 -16.085 19.880 33.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.237 4.237 4 C -0.196 4.196 5 C 0.382 3.618 6 O -0.453 6.453 7 N -0.348 5.348 8 C 0.032 3.968 9 C -0.025 4.025 10 N -0.337 5.337 11 C 0.322 3.678 12 O -0.430 6.430 13 C -0.279 4.279 14 S 0.076 5.924 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.185 1.185 23 C -0.207 4.207 24 C -0.160 4.160 25 N -0.100 5.100 26 N -0.080 5.080 27 H 0.312 0.688 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.176 0.824 32 H 0.254 0.746 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.258 0.742 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.451 -14.014 20.055 32.538 hybrid contribution 0.161 -1.653 -1.433 2.194 sum -21.289 -15.667 18.622 32.334 Atomic orbital electron populations 1.20546 0.83251 1.05528 1.04900 1.21929 0.97035 0.85915 1.04293 1.21738 0.90456 1.00905 1.10618 1.21706 0.94831 0.90563 1.12488 1.17280 0.82711 0.86170 0.75689 1.90792 1.87475 1.14897 1.52126 1.45691 1.04227 1.11181 1.73714 1.20878 0.81158 0.92679 1.02079 1.20684 0.96901 1.03284 0.81649 1.45062 1.61682 1.11091 1.15819 1.20109 0.77124 0.86646 0.83914 1.90707 1.57619 1.16489 1.78173 1.23364 1.04118 1.03438 0.97029 1.85637 1.75137 1.11417 1.20257 1.23171 1.44325 0.95348 1.06598 0.89860 1.26160 0.95570 0.96408 1.01187 1.70189 1.42494 1.09764 1.32346 0.84991 0.78699 0.77746 0.76474 1.18700 1.20441 1.18496 1.23450 0.96690 1.01139 0.99393 1.23484 1.01817 0.96563 0.94135 1.73435 1.03218 1.13857 1.19480 1.43416 1.02079 1.10697 1.51829 0.68840 0.88549 0.88984 0.88653 0.82393 0.74587 0.90139 0.93705 0.74229 0.86970 0.87504 0.92015 0.88384 0.87431 0.85886 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.44 71.23 0.74 0.49 16 2 C 0.03 0.41 7.23 41.40 0.30 0.71 16 3 C -0.21 -4.18 10.73 22.41 0.24 -3.94 16 4 C -0.04 -0.87 7.13 42.46 0.30 -0.57 16 5 C 0.60 17.50 7.82 86.75 0.68 18.18 16 6 O -0.58 -21.62 16.92 -3.93 -0.07 -21.69 16 7 N -0.70 -16.94 5.44 -466.09 -2.54 -19.48 16 8 C 0.16 4.41 5.63 86.38 0.49 4.89 16 9 C 0.06 1.41 1.79 3.60 0.01 1.42 16 10 N -0.68 -16.97 5.45 -422.93 -2.31 -19.27 16 11 C 0.54 19.94 7.66 87.66 0.67 20.61 16 12 O -0.55 -26.04 14.64 -3.04 -0.04 -26.09 16 13 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 14 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 15 C -0.55 -31.56 9.50 67.95 0.65 -30.92 16 16 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.66 5.49 84.86 0.47 1.13 16 18 N -0.91 -56.92 13.22 21.65 0.29 -56.63 16 19 Si 1.00 44.04 29.55 68.60 2.03 46.07 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 23 C -0.17 -3.33 10.11 30.62 0.31 -3.02 16 24 C -0.12 -1.59 9.94 30.62 0.30 -1.28 16 25 N -0.26 -4.79 11.92 -48.17 -0.57 -5.36 16 26 N -0.36 -3.94 6.83 -47.93 -0.33 -4.26 16 27 H 0.46 1.09 8.96 -220.00 -1.97 -0.88 16 28 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.42 7.88 8.09 -92.71 -0.75 7.13 16 33 H 0.08 2.25 7.89 -2.39 -0.02 2.24 16 34 H 0.04 1.70 6.83 -2.39 -0.02 1.69 16 35 H 0.42 7.21 8.83 -92.71 -0.82 6.39 16 36 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 37 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 38 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.11 2.06 8.05 -2.39 -0.02 2.04 16 41 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -90.07 383.48 -1.56 -91.63 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -2.45 Total: 21.80 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.59 Total: 3.02 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -5.46 Total: -105.01 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -0.11 Total: -47.78 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -90.07 -1.56 -91.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705251322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.158 kcal (2) G-P(sol) polarization free energy of solvation -90.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds