Wall clock time and date at job start Tue Mar 31 2020 20:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30941 * 122.89936 * 2 1 4 4 C 1.29435 * 117.35772 * 179.97438 * 3 2 1 5 5 S 1.70943 * 110.39346 * 359.72501 * 4 3 2 6 6 C 1.35659 * 122.90367 * 180.02562 * 2 1 3 7 7 C 1.46678 * 126.13347 * 359.97438 * 6 2 1 8 8 O 1.21691 * 119.99864 * 0.02562 * 7 6 2 9 9 N 1.34774 * 120.00004 * 180.02562 * 7 6 2 10 10 C 1.46506 * 119.99990 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47257 * 180.02562 * 10 9 7 12 12 C 1.53513 * 114.16793 * 184.99879 * 11 10 9 13 13 N 1.47484 * 87.93060 * 220.32447 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99401 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46681 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47048 * 120.00010 * 22 20 18 25 25 H 1.48501 * 109.47100 * 240.00460 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 H 1.08999 * 109.47187 * 270.00001 * 1 2 3 28 28 H 1.09006 * 109.47146 * 30.00211 * 1 2 3 29 29 H 1.08999 * 109.46545 * 149.99849 * 1 2 3 30 30 H 1.08005 * 124.79900 * 179.97438 * 4 3 2 31 31 H 0.96997 * 120.00247 * 0.02562 * 9 7 6 32 32 H 1.08996 * 109.46964 * 59.99642 * 10 9 7 33 33 H 1.09002 * 109.46662 * 300.00006 * 10 9 7 34 34 H 1.09003 * 113.37778 * 318.07254 * 11 10 9 35 35 H 1.09005 * 113.47855 * 105.56322 * 12 11 10 36 36 H 1.08997 * 113.47719 * 335.09347 * 12 11 10 37 37 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 38 38 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 39 39 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 40 40 H 0.97004 * 120.00112 * 179.97438 * 21 20 18 41 41 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9744 0.0005 5 16 3.9447 -0.6779 0.0088 6 6 2.2440 -1.1390 -0.0005 7 6 1.7192 -2.5087 -0.0006 8 8 0.5174 -2.6998 -0.0007 9 7 2.5681 -3.5555 -0.0006 10 6 2.0439 -4.9236 -0.0013 11 6 3.2084 -5.9159 -0.0005 12 6 2.7820 -7.3855 -0.1231 13 7 3.8196 -7.7140 0.8721 14 6 3.3285 -8.7077 1.8361 15 6 4.4766 -9.1997 2.6794 16 8 5.5940 -8.7649 2.4956 17 7 4.2608 -10.1184 3.6416 18 6 5.3052 -10.5655 4.4090 19 1 6.3009 -10.1820 4.2422 20 6 5.0827 -11.5122 5.4014 21 7 3.8710 -11.9785 5.6047 22 14 6.5057 -12.1221 6.4466 23 1 7.7575 -11.4456 6.0215 24 1 6.2382 -11.8152 7.8747 25 1 6.6528 -13.5898 6.2747 26 6 3.6674 -6.3454 1.4000 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5139 30 1 4.2057 1.7977 0.0002 31 1 3.5260 -3.4032 -0.0002 32 1 1.4344 -5.0787 -0.8915 33 1 1.4338 -5.0793 0.8885 34 1 4.0210 -5.6297 -0.6683 35 1 2.9737 -7.8127 -1.1075 36 1 1.7677 -7.5741 0.2286 37 1 2.8862 -9.5470 1.2995 38 1 2.5761 -8.2500 2.4784 39 1 3.3665 -10.4626 3.7917 40 1 3.7156 -12.6397 6.2973 41 1 2.8894 -6.2564 2.1582 42 1 4.6095 -5.8909 1.7065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714963201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:13 Heat of formation + Delta-G solvation = 15.867243 kcal Electronic energy + Delta-G solvation = -25439.847616 eV Core-core repulsion = 21548.264324 eV Total energy + Delta-G solvation = -3891.583292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.83147 -40.33064 -39.24764 -37.77224 -35.15409 -33.89022 -32.35146 -31.45186 -30.98774 -29.04280 -27.14007 -25.93073 -25.47535 -24.88058 -22.97087 -21.82891 -20.37127 -19.51017 -19.12922 -18.79910 -17.88655 -17.24267 -16.43256 -16.23238 -15.96495 -15.62725 -15.23836 -15.16685 -14.77920 -14.59399 -14.34452 -14.05077 -14.00518 -13.65717 -13.36316 -12.99357 -12.88016 -12.78004 -12.57837 -12.28906 -11.78258 -11.66008 -11.53468 -11.39146 -11.10604 -10.80247 -10.59150 -10.48764 -10.34505 -10.22061 -10.11843 -10.04037 -9.50999 -9.49396 -9.26286 -8.82820 -8.21401 -7.95865 -6.41474 -3.82195 -0.21653 0.72215 1.09188 2.01222 2.69495 2.77609 3.16137 3.26499 3.33771 3.68985 3.89263 3.94312 4.18337 4.23675 4.41085 4.55924 4.57341 4.68980 4.93023 4.99934 5.18262 5.26928 5.32872 5.33531 5.37854 5.43001 5.46058 5.50119 5.63320 5.66020 5.71526 5.85716 5.91491 6.01968 6.15785 6.26422 6.50502 6.98303 7.13874 7.15929 7.55532 7.74102 8.06586 8.62461 9.18875 9.55115 10.07413 10.76487 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.001831 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.434173 B =15289.289803 C =15755.294518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.147 3.853 3 N -0.476 5.476 4 C 0.039 3.961 5 S 0.166 5.834 6 C -0.299 4.299 7 C 0.597 3.403 8 O -0.522 6.522 9 N -0.720 5.720 10 C 0.132 3.868 11 C -0.133 4.133 12 C 0.006 3.994 13 N -0.439 5.439 14 C 0.008 3.992 15 C 0.447 3.553 16 O -0.576 6.576 17 N -0.567 5.567 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.009 3.991 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.207 0.793 31 H 0.400 0.600 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.070 0.930 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.517 22.665 -13.244 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.009 3.991 3 N -0.190 5.190 4 C -0.256 4.256 5 S 0.421 5.579 6 C -0.423 4.423 7 C 0.383 3.617 8 O -0.400 6.400 9 N -0.372 5.372 10 C 0.009 3.991 11 C -0.153 4.153 12 C -0.124 4.124 13 N -0.161 5.161 14 C -0.124 4.124 15 C 0.232 3.768 16 O -0.459 6.459 17 N -0.205 5.205 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.120 4.120 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.224 0.776 31 H 0.235 0.765 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.214 22.380 -13.396 26.421 hybrid contribution -0.929 -0.247 1.112 1.470 sum -5.144 22.133 -12.284 25.830 Atomic orbital electron populations 1.20691 0.85812 1.04589 1.03902 1.20789 0.98879 0.84919 0.94539 1.66156 1.04909 1.31251 1.16684 1.28770 0.95304 1.00467 1.01085 1.84045 1.05141 1.03500 1.65221 1.25503 0.96403 0.99092 1.21339 1.16637 0.86122 0.82391 0.76575 1.90804 1.14191 1.84956 1.50066 1.45898 1.09747 1.06184 1.75355 1.21455 0.95875 0.78846 1.02974 1.23036 0.98165 0.94532 0.99524 1.23833 0.95778 0.93368 0.99429 1.68820 1.35848 1.02386 1.09039 1.22516 0.96843 0.97495 0.95550 1.19665 0.89655 0.83852 0.83673 1.90521 1.24310 1.60140 1.70931 1.41882 1.11292 1.36812 1.30472 1.19742 0.90793 1.20373 1.11789 0.87914 1.25262 0.97651 0.97037 0.98120 1.69621 1.20204 1.30818 1.33788 0.85802 0.80944 0.78422 0.79192 1.19234 1.20784 1.20749 1.23974 1.01839 0.91332 0.94894 0.89927 0.90662 0.88085 0.77619 0.76506 0.90553 0.90728 0.87254 0.89273 0.91065 0.89309 0.92212 0.77552 0.91956 0.91238 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.70 36.01 0.35 -0.46 16 2 C 0.15 1.45 6.79 -83.89 -0.57 0.88 16 3 N -0.48 -4.43 10.50 -11.53 -0.12 -4.55 16 4 C 0.04 0.25 12.22 51.75 0.63 0.88 16 5 S 0.17 1.04 22.35 -107.50 -2.40 -1.37 16 6 C -0.30 -2.83 6.48 -37.10 -0.24 -3.07 16 7 C 0.60 6.40 7.78 -12.85 -0.10 6.30 16 8 O -0.52 -6.92 14.27 5.20 0.07 -6.85 16 9 N -0.72 -6.38 5.55 -61.62 -0.34 -6.72 16 10 C 0.13 1.19 5.58 -4.04 -0.02 1.17 16 11 C -0.13 -1.29 4.09 -90.10 -0.37 -1.66 16 12 C 0.01 0.06 7.26 -7.55 -0.05 0.01 16 13 N -0.44 -6.96 5.82 -246.11 -1.43 -8.40 16 14 C 0.01 0.14 5.30 -4.98 -0.03 0.11 16 15 C 0.45 10.64 7.85 -10.98 -0.09 10.56 16 16 O -0.58 -15.90 16.01 5.54 0.09 -15.81 16 17 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 18 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 19 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 21 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 22 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.01 0.11 7.28 -7.56 -0.06 0.06 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 1.00 6.01 -51.93 -0.31 0.69 16 30 H 0.21 0.51 8.06 -52.48 -0.42 0.09 16 31 H 0.40 2.87 7.66 -40.82 -0.31 2.56 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 37 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 38 H 0.06 0.93 7.30 -51.93 -0.38 0.55 16 39 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.07 0.88 7.15 -51.93 -0.37 0.51 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -35.05 371.37 -9.08 -44.13 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.40 Total: 9.58 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -0.78 Total: 6.74 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -1.23 Total: -58.12 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.16 Total: -22.66 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.40 Total: -1.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.05 -9.08 -44.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714963201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.996 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds