Wall clock time and date at job start Tue Mar 31 2020 20:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30941 * 122.89936 * 2 1 4 4 C 1.29435 * 117.35772 * 179.97438 * 3 2 1 5 5 S 1.70943 * 110.39346 * 359.72501 * 4 3 2 6 6 C 1.35659 * 122.90367 * 180.02562 * 2 1 3 7 7 C 1.46678 * 126.13347 * 359.97438 * 6 2 1 8 8 O 1.21691 * 119.99864 * 0.02562 * 7 6 2 9 9 N 1.34774 * 120.00004 * 180.02562 * 7 6 2 10 10 C 1.46506 * 119.99990 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47257 * 180.02562 * 10 9 7 12 12 C 1.53513 * 114.16793 * 184.99879 * 11 10 9 13 13 N 1.47484 * 87.93060 * 220.32447 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99401 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46681 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47048 * 120.00010 * 22 20 18 25 25 H 1.48501 * 109.47100 * 240.00460 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 H 1.08999 * 109.47187 * 270.00001 * 1 2 3 28 28 H 1.09006 * 109.47146 * 30.00211 * 1 2 3 29 29 H 1.08999 * 109.46545 * 149.99849 * 1 2 3 30 30 H 1.08005 * 124.79900 * 179.97438 * 4 3 2 31 31 H 0.96997 * 120.00247 * 0.02562 * 9 7 6 32 32 H 1.08996 * 109.46964 * 59.99642 * 10 9 7 33 33 H 1.09002 * 109.46662 * 300.00006 * 10 9 7 34 34 H 1.09003 * 113.37778 * 318.07254 * 11 10 9 35 35 H 1.09005 * 113.47855 * 105.56322 * 12 11 10 36 36 H 1.08997 * 113.47719 * 335.09347 * 12 11 10 37 37 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 38 38 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 39 39 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 40 40 H 0.97004 * 120.00112 * 179.97438 * 21 20 18 41 41 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9744 0.0005 5 16 3.9447 -0.6779 0.0088 6 6 2.2440 -1.1390 -0.0005 7 6 1.7192 -2.5087 -0.0006 8 8 0.5174 -2.6998 -0.0007 9 7 2.5681 -3.5555 -0.0006 10 6 2.0439 -4.9236 -0.0013 11 6 3.2084 -5.9159 -0.0005 12 6 2.7820 -7.3855 -0.1231 13 7 3.8196 -7.7140 0.8721 14 6 3.3285 -8.7077 1.8361 15 6 4.4766 -9.1997 2.6794 16 8 5.5940 -8.7649 2.4956 17 7 4.2608 -10.1184 3.6416 18 6 5.3052 -10.5655 4.4090 19 1 6.3009 -10.1820 4.2422 20 6 5.0827 -11.5122 5.4014 21 7 3.8710 -11.9785 5.6047 22 14 6.5057 -12.1221 6.4466 23 1 7.7575 -11.4456 6.0215 24 1 6.2382 -11.8152 7.8747 25 1 6.6528 -13.5898 6.2747 26 6 3.6674 -6.3454 1.4000 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5139 30 1 4.2057 1.7977 0.0002 31 1 3.5260 -3.4032 -0.0002 32 1 1.4344 -5.0787 -0.8915 33 1 1.4338 -5.0793 0.8885 34 1 4.0210 -5.6297 -0.6683 35 1 2.9737 -7.8127 -1.1075 36 1 1.7677 -7.5741 0.2286 37 1 2.8862 -9.5470 1.2995 38 1 2.5761 -8.2500 2.4784 39 1 3.3665 -10.4626 3.7917 40 1 3.7156 -12.6397 6.2973 41 1 2.8894 -6.2564 2.1582 42 1 4.6095 -5.8909 1.7065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714963201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:12 Heat of formation + Delta-G solvation = -13.105016 kcal Electronic energy + Delta-G solvation = -25441.103947 eV Core-core repulsion = 21548.264324 eV Total energy + Delta-G solvation = -3892.839623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65111 -41.24727 -40.09961 -39.55059 -36.09363 -35.84230 -33.33049 -33.00984 -32.25313 -29.92651 -28.25732 -26.91857 -26.64484 -26.00019 -24.16733 -22.61628 -21.22709 -21.02094 -20.19662 -19.86730 -19.40664 -18.00511 -17.78411 -17.21696 -16.84716 -16.65894 -16.54623 -16.34503 -16.14013 -15.69859 -15.46823 -15.29211 -14.91703 -14.68158 -14.58982 -14.32697 -13.71006 -13.60165 -13.52981 -13.51538 -13.44112 -12.98203 -12.69236 -12.45477 -12.40347 -12.33309 -12.12818 -11.90785 -11.54427 -11.49830 -11.25468 -10.77451 -10.67916 -10.38694 -10.20949 -10.01724 -9.86092 -9.72211 -8.47519 -5.96270 -0.81265 0.17468 0.53284 1.35760 1.35975 1.40707 1.55064 1.96257 2.03589 2.05251 2.28160 2.82941 3.17001 3.18655 3.29255 3.44551 3.69688 3.71686 3.98708 4.14341 4.15689 4.19726 4.26324 4.36517 4.47186 4.52147 4.61539 4.67626 4.70697 4.72675 4.80365 4.85035 4.87018 5.10694 5.26955 5.36436 5.39250 5.41353 5.90539 6.09339 6.28883 6.55624 6.60106 6.99199 7.12577 7.56152 8.12553 8.70169 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.001831 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.434173 B =15289.289803 C =15755.294518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.135 3.865 3 N -0.505 5.505 4 C 0.047 3.953 5 S 0.215 5.785 6 C -0.329 4.329 7 C 0.595 3.405 8 O -0.555 6.555 9 N -0.713 5.713 10 C 0.138 3.862 11 C -0.105 4.105 12 C 0.011 3.989 13 N -0.477 5.477 14 C 0.021 3.979 15 C 0.442 3.558 16 O -0.619 6.619 17 N -0.577 5.577 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.270 1.270 26 C 0.001 3.999 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.245 0.755 31 H 0.409 0.591 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.074 0.926 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 23.343 -13.750 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.004 4.004 3 N -0.220 5.220 4 C -0.247 4.247 5 S 0.471 5.529 6 C -0.453 4.453 7 C 0.382 3.618 8 O -0.436 6.436 9 N -0.365 5.365 10 C 0.015 3.985 11 C -0.124 4.124 12 C -0.118 4.118 13 N -0.199 5.199 14 C -0.110 4.110 15 C 0.229 3.771 16 O -0.505 6.505 17 N -0.215 5.215 18 C -0.462 4.462 19 H 0.095 0.905 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.128 4.128 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.261 0.739 31 H 0.245 0.755 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.919 23.050 -13.913 27.207 hybrid contribution -0.951 -0.395 1.238 1.610 sum -4.870 22.655 -12.675 26.413 Atomic orbital electron populations 1.20628 0.86041 1.04313 1.03758 1.20945 0.99296 0.85486 0.94703 1.66198 1.06173 1.31186 1.18430 1.29471 0.94992 1.01781 0.98487 1.83844 1.02187 1.02842 1.64047 1.25481 0.98664 0.98367 1.22822 1.16836 0.85833 0.83135 0.76035 1.90781 1.15530 1.85565 1.51697 1.45830 1.10097 1.05856 1.74670 1.21369 0.95414 0.78637 1.03103 1.22833 0.98335 0.94149 0.97067 1.23924 0.95519 0.93721 0.98635 1.68776 1.38326 1.02921 1.09860 1.22390 0.94205 0.98897 0.95531 1.20829 0.90888 0.82325 0.83063 1.90481 1.26777 1.61247 1.71991 1.41968 1.10927 1.37551 1.31015 1.19682 0.90689 1.22062 1.13753 0.90470 1.26052 1.00276 0.96508 0.98599 1.69678 1.21480 1.30892 1.34165 0.84867 0.77556 0.78123 0.77766 1.19823 1.19562 1.19552 1.24046 1.01257 0.90418 0.97043 0.90016 0.89792 0.89388 0.73945 0.75492 0.89702 0.91364 0.86191 0.88051 0.89253 0.87343 0.90085 0.77045 0.91318 0.90805 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.70 71.24 0.69 -0.93 16 2 C 0.13 2.62 6.79 42.10 0.29 2.91 16 3 N -0.51 -8.78 10.50 -190.40 -2.00 -10.78 16 4 C 0.05 0.48 12.22 130.60 1.60 2.07 16 5 S 0.22 2.24 22.35 -56.49 -1.26 0.98 16 6 C -0.33 -5.98 6.48 23.88 0.15 -5.82 16 7 C 0.60 12.46 7.78 86.45 0.67 13.13 16 8 O -0.56 -14.83 14.27 -4.32 -0.06 -14.89 16 9 N -0.71 -11.69 5.55 -467.08 -2.59 -14.28 16 10 C 0.14 2.25 5.58 86.38 0.48 2.73 16 11 C -0.10 -1.82 4.09 -10.45 -0.04 -1.86 16 12 C 0.01 0.21 7.26 83.57 0.61 0.82 16 13 N -0.48 -14.53 5.82 -932.57 -5.43 -19.95 16 14 C 0.02 0.73 5.30 85.56 0.45 1.18 16 15 C 0.44 21.33 7.85 87.66 0.69 22.02 16 16 O -0.62 -35.14 16.01 -3.08 -0.05 -35.19 16 17 N -0.58 -29.96 5.29 -306.98 -1.62 -31.58 16 18 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 21 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 22 Si 0.99 43.21 29.55 68.60 2.03 45.23 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.00 0.03 7.28 83.57 0.61 0.64 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.09 1.84 6.01 -2.39 -0.01 1.82 16 30 H 0.24 0.33 8.06 -2.91 -0.02 0.31 16 31 H 0.41 5.17 7.66 -92.71 -0.71 4.46 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.25 7.81 -2.39 -0.02 1.23 16 34 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.09 1.47 7.87 -2.39 -0.02 1.45 16 37 H 0.11 3.22 8.08 -2.39 -0.02 3.20 16 38 H 0.08 2.39 7.30 -2.39 -0.02 2.37 16 39 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 40 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.07 1.80 7.15 -2.39 -0.02 1.78 16 42 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -77.75 371.37 -3.59 -81.34 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.36 Total: 30.54 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 7.48 Total: 18.27 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -11.36 Total: -126.29 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.11 Total: -50.08 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.26 Total: 0.98 kcal Total: -77.75 -3.59 -81.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714963201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.234 kcal (2) G-P(sol) polarization free energy of solvation -77.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds