Wall clock time and date at job start Tue Mar 31 2020 20:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35359 * 126.38728 * 2 1 4 4 C 1.41503 * 105.50583 * 179.97438 * 3 2 1 5 5 C 1.47705 * 126.52247 * 180.02562 * 4 3 2 6 6 O 1.21576 * 119.99937 * 7.02689 * 5 4 3 7 7 N 1.34777 * 120.00145 * 187.03044 * 5 4 3 8 8 C 1.46959 * 120.59586 * 6.83546 * 7 5 4 9 9 C 1.53806 * 108.40337 * 124.75386 * 8 7 5 10 10 N 1.46969 * 108.57598 * 49.63995 * 9 8 7 11 11 C 1.34775 * 120.59478 * 124.62988 * 10 9 8 12 12 O 1.21282 * 120.00219 * 180.02562 * 11 10 9 13 13 C 1.50706 * 119.99902 * 0.02562 * 11 10 9 14 14 S 1.81003 * 109.46944 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99937 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99880 * 0.02562 * 15 14 13 17 17 C 1.38799 * 119.99787 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99666 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00249 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47340 * 89.99492 * 19 17 15 21 21 H 1.48504 * 109.47133 * 209.99661 * 19 17 15 22 22 H 1.48506 * 109.46951 * 329.99507 * 19 17 15 23 23 C 1.46961 * 118.81023 * 304.64258 * 10 9 8 24 24 C 1.46969 * 120.59476 * 187.10867 * 7 5 4 25 25 N 1.31811 * 106.96120 * 0.02562 * 4 3 2 26 26 N 1.28467 * 110.07289 * 359.97438 * 25 4 3 27 27 H 0.96998 * 124.88304 * 179.97438 * 26 25 4 28 28 H 1.09005 * 109.46552 * 89.99954 * 1 2 3 29 29 H 1.08993 * 109.47213 * 209.99677 * 1 2 3 30 30 H 1.09003 * 109.46712 * 330.00420 * 1 2 3 31 31 H 1.08000 * 127.25321 * 359.97438 * 3 2 1 32 32 H 1.09008 * 109.60970 * 244.54438 * 8 7 5 33 33 H 1.09003 * 109.60908 * 5.04675 * 8 7 5 34 34 H 1.08991 * 109.74588 * 289.84763 * 9 8 7 35 35 H 1.09007 * 109.53265 * 169.29927 * 9 8 7 36 36 H 1.08991 * 109.47418 * 300.00430 * 13 11 10 37 37 H 1.08998 * 109.46611 * 60.01202 * 13 11 10 38 38 H 0.97006 * 120.00164 * 180.02562 * 18 17 15 39 39 H 1.08997 * 109.61473 * 295.48563 * 23 10 9 40 40 H 1.09001 * 109.75052 * 175.05572 * 23 10 9 41 41 H 1.09006 * 109.60769 * 354.95267 * 24 7 5 42 42 H 1.08991 * 109.60869 * 115.45644 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 0.0006 5 6 4.8765 1.3810 0.0014 6 8 4.8256 2.5888 0.1303 7 7 6.0684 0.7681 -0.1410 8 6 6.1395 -0.6675 -0.4467 9 6 6.9819 -0.8516 -1.7203 10 7 8.2340 -0.0975 -1.5665 11 6 9.4258 -0.7105 -1.7080 12 8 10.4524 -0.0778 -1.5784 13 6 9.4830 -2.1822 -2.0274 14 16 11.2111 -2.7057 -2.1527 15 6 10.9873 -4.4139 -2.5223 16 1 9.9910 -4.8225 -2.6048 17 6 12.0915 -5.2341 -2.7083 18 7 11.9242 -6.5102 -2.9849 19 14 13.8147 -4.5272 -2.5663 20 1 14.2807 -4.6375 -1.1607 21 1 14.7346 -5.2834 -3.4536 22 1 13.7986 -3.0987 -2.9719 23 6 8.1630 1.3371 -1.2553 24 6 7.3204 1.5223 0.0127 25 7 3.5420 -0.7297 0.0004 26 7 2.3080 -1.0871 0.0002 27 1 1.9965 -2.0057 -0.0003 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5137 30 1 -0.3633 0.8901 0.5138 31 1 2.0058 2.1260 -0.0004 32 1 6.6072 -1.1958 0.3842 33 1 5.1347 -1.0566 -0.6115 34 1 6.4321 -0.4758 -2.5830 35 1 7.2067 -1.9093 -1.8589 36 1 8.9896 -2.7454 -1.2354 37 1 8.9771 -2.3682 -2.9749 38 1 12.6959 -7.0835 -3.1146 39 1 7.6971 1.8688 -2.0850 40 1 9.1667 1.7278 -1.0879 41 1 7.0957 2.5799 0.1514 42 1 7.8702 1.1465 0.8755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001719979771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:49 Heat of formation + Delta-G solvation = 1.095972 kcal Electronic energy + Delta-G solvation = -26423.084291 eV Core-core repulsion = 22530.860469 eV Total energy + Delta-G solvation = -3892.223822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.75654 -41.50086 -40.33789 -38.08803 -35.29736 -34.66231 -33.87728 -33.17168 -32.47289 -30.86901 -28.79519 -27.97034 -27.82004 -25.55608 -24.75494 -23.14947 -22.24042 -21.22807 -20.07447 -19.26652 -18.94739 -18.24576 -17.49822 -17.18547 -17.10396 -17.01490 -16.81019 -16.80527 -16.05106 -15.68884 -15.24214 -15.09595 -14.94827 -14.79033 -14.68234 -14.36707 -14.07127 -13.72508 -13.61170 -13.52201 -13.35192 -13.08995 -13.01884 -12.81347 -12.72325 -12.66422 -12.36874 -11.86482 -11.62131 -11.21175 -11.16607 -10.96232 -10.52479 -10.49498 -10.36723 -9.91811 -9.47249 -8.99532 -8.50987 -6.21569 0.40766 0.95849 1.10688 1.31584 1.43173 1.47241 1.51124 1.66102 1.92646 2.17718 2.25006 2.26531 2.68487 2.87420 3.20686 3.44563 3.69644 3.74941 3.85109 4.01409 4.07586 4.14636 4.20491 4.29177 4.35275 4.41032 4.51308 4.58599 4.62447 4.70659 4.78889 4.82476 4.92301 5.05133 5.13520 5.26345 5.35873 5.47210 5.71673 6.04755 6.12411 6.14852 6.24607 6.77793 6.94513 7.00950 7.01974 8.61141 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.002434 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.778319 B =11500.199338 C =12788.380861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.039 3.961 3 C -0.203 4.203 4 C -0.032 4.032 5 C 0.602 3.398 6 O -0.566 6.566 7 N -0.599 5.599 8 C 0.077 3.923 9 C 0.091 3.909 10 N -0.608 5.608 11 C 0.537 3.463 12 O -0.559 6.559 13 C -0.107 4.107 14 S -0.177 6.177 15 C -0.525 4.525 16 H 0.065 0.935 17 C 0.046 3.954 18 N -0.916 5.916 19 Si 0.912 3.088 20 H -0.263 1.263 21 H -0.260 1.260 22 H -0.238 1.238 23 C 0.103 3.897 24 C 0.104 3.896 25 N -0.267 5.267 26 N -0.366 5.366 27 H 0.462 0.538 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.277 0.723 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.500 12.685 6.345 30.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.231 4.231 4 C -0.191 4.191 5 C 0.390 3.610 6 O -0.444 6.444 7 N -0.331 5.331 8 C -0.047 4.047 9 C -0.032 4.032 10 N -0.342 5.342 11 C 0.325 3.675 12 O -0.437 6.437 13 C -0.257 4.257 14 S 0.049 5.951 15 C -0.673 4.673 16 H 0.084 0.916 17 C -0.159 4.159 18 N -0.554 5.554 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.184 1.184 22 H -0.162 1.162 23 C -0.020 4.020 24 C -0.019 4.019 25 N -0.104 5.104 26 N -0.083 5.083 27 H 0.310 0.690 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.180 0.820 32 H 0.094 0.906 33 H 0.166 0.834 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.285 13.159 6.567 29.251 hybrid contribution -0.682 -0.775 -0.183 1.049 sum -25.967 12.383 6.384 29.468 Atomic orbital electron populations 1.20556 0.83453 1.05553 1.04818 1.21933 0.96946 0.85968 1.03966 1.21701 0.90111 1.00879 1.10402 1.21730 0.94921 0.90397 1.12045 1.17304 0.82178 0.85951 0.75606 1.90759 1.86798 1.14567 1.52268 1.47939 1.05097 1.10970 1.69134 1.23076 1.05034 0.79712 0.96864 1.22494 0.83634 0.98416 0.98689 1.48038 1.05540 1.10160 1.70465 1.20069 0.83216 0.88516 0.75705 1.90680 1.34584 1.66983 1.51452 1.23281 1.00554 0.95176 1.06725 1.84776 1.07991 1.08992 1.93310 1.22434 0.96738 0.93050 1.55067 0.91644 1.25528 1.02854 0.94488 0.93062 1.70011 1.32850 1.05409 1.47111 0.85898 0.79907 0.81070 0.79698 1.18755 1.18421 1.16173 1.21979 1.01901 0.80616 0.97476 1.22016 0.83495 0.98815 0.97540 1.73151 1.02655 1.13955 1.20629 1.43597 1.02296 1.10818 1.51565 0.68988 0.88781 0.88850 0.88695 0.81974 0.90633 0.83375 0.89470 0.87126 0.86647 0.86804 0.91397 0.90022 0.88519 0.87513 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.09 10.44 71.24 0.74 0.66 16 2 C 0.04 0.35 7.23 41.40 0.30 0.65 16 3 C -0.20 -3.25 10.74 22.41 0.24 -3.01 16 4 C -0.03 -0.65 6.83 42.46 0.29 -0.36 16 5 C 0.60 14.77 7.69 86.75 0.67 15.44 16 6 O -0.57 -17.04 16.35 -3.95 -0.06 -17.10 16 7 N -0.60 -13.12 2.94 -820.72 -2.41 -15.54 16 8 C 0.08 1.43 6.33 86.56 0.55 1.98 16 9 C 0.09 1.79 6.52 86.56 0.56 2.35 16 10 N -0.61 -15.92 2.95 -817.16 -2.41 -18.33 16 11 C 0.54 18.81 7.72 87.66 0.68 19.49 16 12 O -0.56 -23.98 15.27 -3.04 -0.05 -24.03 16 13 C -0.11 -3.96 4.50 71.24 0.32 -3.64 16 14 S -0.18 -8.89 18.55 -56.49 -1.05 -9.94 16 15 C -0.53 -30.08 10.04 67.95 0.68 -29.40 16 16 H 0.07 3.92 8.03 -2.91 -0.02 3.89 16 17 C 0.05 2.68 5.50 84.86 0.47 3.15 16 18 N -0.92 -55.14 13.97 21.65 0.30 -54.84 16 19 Si 0.91 44.80 27.74 68.60 1.90 46.71 16 20 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 23 C 0.10 2.44 6.59 86.42 0.57 3.01 16 24 C 0.10 2.27 6.60 86.41 0.57 2.84 16 25 N -0.27 -4.23 8.70 -48.18 -0.42 -4.65 16 26 N -0.37 -3.30 6.83 -47.93 -0.33 -3.62 16 27 H 0.46 0.72 8.96 -219.99 -1.97 -1.26 16 28 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 29 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.15 2.50 4.10 -33.81 -0.14 2.36 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 2.03 5.91 -2.38 -0.01 2.02 16 36 H 0.12 3.88 7.72 -2.40 -0.02 3.86 16 37 H 0.11 3.87 7.91 -2.40 -0.02 3.85 16 38 H 0.28 15.42 8.31 -92.70 -0.77 14.65 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 40 H 0.10 2.53 7.00 -2.39 -0.02 2.51 16 41 H 0.11 2.33 6.99 -2.38 -0.02 2.31 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -80.78 360.96 1.05 -79.73 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -1.07 Total: 8.45 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 6.64 Total: 13.16 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -5.27 Total: -96.98 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.11 Total: -41.13 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.71 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Total: -80.78 1.05 -79.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719979771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.823 kcal (2) G-P(sol) polarization free energy of solvation -80.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds