Wall clock time and date at job start Tue Mar 31 2020 20:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38774 * 119.90022 * 2 1 4 4 N 1.31774 * 120.12204 * 179.97438 * 3 2 1 5 5 C 1.33028 * 119.92851 * 0.02562 * 4 3 2 6 6 C 1.48146 * 120.09661 * 180.02562 * 5 4 3 7 7 O 1.21523 * 120.00021 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00016 * 359.72526 * 6 5 4 9 9 C 1.46504 * 119.99858 * 180.27150 * 8 6 5 10 10 C 1.53004 * 109.46929 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.46988 * 180.02562 * 10 9 8 12 12 N 1.46499 * 109.46775 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99367 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00618 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99574 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47301 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00246 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99904 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99974 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00070 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99996 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46954 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46951 * 119.99896 * 21 19 17 24 24 H 1.48499 * 109.46905 * 239.99726 * 21 19 17 25 25 C 1.39403 * 119.80642 * 0.27989 * 5 4 3 26 26 N 1.32100 * 119.90912 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47159 * 90.00399 * 1 2 3 28 28 H 1.09003 * 109.47014 * 209.99547 * 1 2 3 29 29 H 1.08997 * 109.47440 * 330.00400 * 1 2 3 30 30 H 1.08004 * 119.94317 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99727 * 0.28049 * 8 6 5 32 32 H 1.08998 * 109.47306 * 300.00567 * 9 8 6 33 33 H 1.08997 * 109.46860 * 60.00391 * 9 8 6 34 34 H 1.09007 * 109.46621 * 300.00188 * 10 9 8 35 35 H 1.08997 * 109.46991 * 59.99937 * 10 9 8 36 36 H 1.08998 * 109.46983 * 299.99930 * 11 10 9 37 37 H 1.08997 * 109.47123 * 59.99717 * 11 10 9 38 38 H 0.96994 * 120.00528 * 359.97438 * 12 11 10 39 39 H 1.08998 * 109.47477 * 300.00195 * 15 13 12 40 40 H 1.09002 * 109.47412 * 59.99936 * 15 13 12 41 41 H 0.97000 * 120.00535 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.05978 * 179.70746 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0578 0.0005 6 6 5.6661 0.0592 0.0017 7 8 6.2747 -0.9926 0.0012 8 7 6.3389 1.2270 -0.0029 9 6 7.8039 1.2283 -0.0078 10 6 8.3126 2.6713 -0.0117 11 6 9.8426 2.6727 -0.0174 12 7 10.3296 4.0544 -0.0218 13 6 11.6544 4.3018 -0.0267 14 8 12.4434 3.3808 -0.0280 15 6 12.1554 5.7231 -0.0317 16 16 13.9654 5.7249 -0.0369 17 6 14.2698 7.4603 -0.0414 18 1 13.4418 8.1537 -0.0410 19 6 15.5736 7.9362 -0.0466 20 7 16.5827 7.0911 -0.0487 21 14 15.8963 9.7762 -0.0522 22 1 14.6028 10.5056 -0.0506 23 1 16.6751 10.1458 1.1570 24 1 16.6676 10.1398 -1.2680 25 6 3.4867 -1.1489 -0.0059 26 7 2.1657 -1.1451 0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6562 2.1369 -0.0004 31 1 5.8531 2.0666 -0.0028 32 1 8.1707 0.7165 0.8819 33 1 8.1647 0.7131 -0.8980 34 1 7.9457 3.1834 -0.9013 35 1 7.9517 3.1862 0.8787 36 1 10.2097 2.1605 0.8719 37 1 10.2030 2.1580 -0.9080 38 1 9.6986 4.7911 -0.0211 39 1 11.7887 6.2345 -0.9217 40 1 11.7945 6.2388 0.8582 41 1 17.4939 7.4236 -0.0527 42 1 4.0251 -2.0852 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720217768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:06 Heat of formation + Delta-G solvation = -36.000142 kcal Electronic energy + Delta-G solvation = -24119.395529 eV Core-core repulsion = 20225.563098 eV Total energy + Delta-G solvation = -3893.832430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.91941 -39.87199 -39.17707 -36.43999 -35.37484 -34.47803 -33.49801 -32.43675 -31.71696 -29.52577 -28.81331 -25.87005 -25.42073 -25.18895 -23.90503 -22.14975 -21.34289 -20.37714 -18.80059 -18.26618 -17.80699 -16.60229 -16.49507 -16.47743 -16.24422 -15.91752 -15.78765 -15.28703 -15.17723 -14.81155 -14.50788 -14.29674 -13.86327 -13.53038 -13.37122 -13.15907 -13.12333 -13.03751 -12.69364 -12.34441 -12.33634 -11.99046 -11.95524 -11.83518 -11.34814 -11.07628 -11.02707 -10.88554 -10.76249 -9.92644 -9.81830 -9.78191 -9.53696 -9.43435 -9.08642 -8.92810 -8.23811 -6.50747 -6.22409 -3.93011 -0.26634 0.37968 2.15131 2.43659 3.02857 3.08016 3.13041 3.21022 3.26774 3.29809 3.33725 3.39859 3.68883 3.73444 4.09689 4.19598 4.34252 4.40460 4.57317 4.59294 4.67052 4.81560 4.85062 4.94300 5.12915 5.15888 5.19151 5.25117 5.27342 5.47083 5.60948 5.62881 5.75540 5.85348 5.88630 5.91167 6.12464 6.43058 6.56363 6.86057 7.07465 7.59115 7.61171 7.66857 8.34688 8.58876 9.23050 10.85114 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033791 B = 0.001338 C = 0.001289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.419740 B =20926.253233 C =21718.305678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.103 3.897 3 C 0.051 3.949 4 N -0.409 5.409 5 C 0.018 3.982 6 C 0.576 3.424 7 O -0.525 6.525 8 N -0.708 5.708 9 C 0.120 3.880 10 C -0.143 4.143 11 C 0.125 3.875 12 N -0.740 5.740 13 C 0.531 3.469 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.119 3.881 26 N -0.442 5.442 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.178 0.822 31 H 0.411 0.589 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.124 -11.290 0.083 36.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.038 4.038 3 C -0.112 4.112 4 N -0.126 5.126 5 C -0.122 4.122 6 C 0.359 3.641 7 O -0.400 6.400 8 N -0.360 5.360 9 C -0.004 4.004 10 C -0.181 4.181 11 C 0.000 4.000 12 N -0.395 5.395 13 C 0.317 3.683 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.041 4.041 26 N -0.157 5.157 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.195 0.805 31 H 0.247 0.753 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -33.070 -13.642 0.086 35.773 hybrid contribution -1.258 3.091 -0.012 3.337 sum -34.328 -10.551 0.074 35.913 Atomic orbital electron populations 1.20800 0.87027 1.04553 1.04052 1.22735 0.99032 0.89673 0.92382 1.23712 0.90075 0.99615 0.97807 1.68304 1.09349 1.28604 1.06326 1.22136 0.95735 0.91153 1.03223 1.17593 0.84990 0.84332 0.77167 1.90845 1.68350 1.31172 1.49631 1.45799 1.07643 1.08841 1.73675 1.21355 0.78419 0.97005 1.03617 1.21978 0.96005 0.96382 1.03767 1.21096 0.91707 0.84221 1.03006 1.45959 1.07417 1.07926 1.78192 1.20319 0.81450 0.91363 0.75145 1.90711 1.54808 1.46147 1.47314 1.23531 1.06927 0.95016 1.04936 1.85419 0.91449 1.09824 1.96712 1.22908 0.95072 0.91516 1.58888 0.90873 1.24991 0.95039 0.99003 0.94523 1.70023 0.99011 1.34321 1.46909 0.86117 0.78399 0.83068 0.77911 1.19624 1.20559 1.20565 1.23872 0.89913 0.99399 0.90912 1.68513 1.08262 1.29027 1.09921 0.89292 0.89660 0.89640 0.80464 0.75269 0.90411 0.90405 0.90332 0.90325 0.91171 0.91178 0.76802 0.89200 0.89203 0.92216 0.79838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.20 10.19 36.01 0.37 0.17 16 2 C 0.10 0.54 6.79 -82.28 -0.56 -0.02 16 3 C 0.05 0.25 10.88 -17.38 -0.19 0.06 16 4 N -0.41 -2.86 9.71 -9.61 -0.09 -2.95 16 5 C 0.02 0.15 6.75 -82.85 -0.56 -0.41 16 6 C 0.58 5.47 7.81 -12.19 -0.10 5.38 16 7 O -0.52 -6.49 16.35 5.35 0.09 -6.40 16 8 N -0.71 -5.30 5.55 -61.15 -0.34 -5.64 16 9 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16 10 C -0.14 -0.94 5.44 -26.73 -0.15 -1.08 16 11 C 0.12 1.30 5.67 -4.04 -0.02 1.28 16 12 N -0.74 -9.20 5.56 -60.30 -0.33 -9.53 16 13 C 0.53 9.70 7.85 -10.98 -0.09 9.62 16 14 O -0.52 -11.65 15.86 5.56 0.09 -11.56 16 15 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 21 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.12 0.94 10.77 -17.00 -0.18 0.75 16 26 N -0.44 -3.35 10.41 -8.95 -0.09 -3.44 16 27 H 0.09 0.09 8.14 -51.92 -0.42 -0.33 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 -0.02 8.08 -51.93 -0.42 -0.44 16 30 H 0.18 0.23 8.06 -52.48 -0.42 -0.20 16 31 H 0.41 2.41 7.82 -40.82 -0.32 2.09 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 39 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 40 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.18 1.28 7.65 -52.49 -0.40 0.88 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -37.88 384.71 -8.15 -46.03 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.68 Total: -0.23 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.08 Total: 0.89 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.13 Total: -46.95 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.18 Total: -17.96 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.88 -8.15 -46.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720217768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.028 kcal (2) G-P(sol) polarization free energy of solvation -37.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds